Clone LD38226 Report

Search the DGRC for LD38226

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:382
Well:26
Vector:pOT2
Associated Gene/TranscriptCG8892-RB
Protein status:LD38226.pep: gold
Preliminary Size:2018
Sequenced Size:1726

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8892 2001-07-04 Blastp of sequenced clone
CG8892 2008-04-29 Release 5.5 accounting

Clone Sequence Records

LD38226.complete Sequence

1726 bp (1726 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051893

> LD38226.complete
TTCGGTCGTTTGCTCGCTATTTCCGAAACTCGCCATTTAACTATCAAGAA
ACAACCTCCAGAGCAACGTCATGTCCACTACCGAGGCGCCGGATGCGCTG
GTGGAGCAGGTCCGCGAGGTGACCGCTTGCTCCATGGACGAGGCCAAATA
TTACTTGTCTGCCTGTGCCAACGATGTGTCCGCCGCAGTGGCTCTGTTTT
TCGAACAGGCAGCCTCCACATCCACGCCATCGGGCTCCAGTGCCGGTGCT
GCGGCTGAATCGCTACCCGTTTTGGACGACGAGGATGAGGTAAGGGCGCC
AATTGCCCCGGTCCGTGAGCAATTGATCCTGCCCGAGGACGACAATTTTT
TTGCGTCGGGGAGCAGTAGCCGGCTGTCGCGTGTGACGCAGCGCGTCAAG
GTTCATCCCCTGCGGGACTTTGCCCGCGAGGGCGCTCTAATGGAGGAGCA
GCTGCAGGCCACTGGCGTCTATGCCGATCCCAATCGAATCCGTCGCGGAC
GGGCCGCCCAGATGGTGGTGGCCGGTCAGGCCATGGCACTTAACAGACGG
TCCACAACGGACACGGCAACCAGCACATCCCGCCTCGGAGACCTATTCCG
CCCGCCAACGGACATACTCTACTCCGGATCACTAACCGCTGCCAGGGAGT
TTGCCACCAAGCGTCAGCGCTGGTTGCTGGTCAACGTGCAGGACGAAAAC
TTTCAGTCGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAA
GAAACTGATACGTCGCCAGTTCACCTTCTGGCAGGTGGACAACGACACCT
CGGAAGGACGCCGCTTTGTGGCCTTCTACCACTGCGCCACCCTGCCTTAC
ATATGCGTGATCGATCCCCGTACTGGTGAGGAAGTGTGGCGCAGCGCAGA
GCCGAAGCTGGAGAATATTCTTCCCGATTTGAGGCAGTTCTTGAAGGAGC
ACCGTGACTTTATTCAGGAGGATGCACCAGGCACCTCGAAGCGTTCGGCC
ACGTACATCGATGATGACGAGGTGCCCGATCCGGAGGCCTCGTGCTCCTC
GACAGCCAGTTCGAAGGAAATGCCCAAGAAACGTGCCAAGGTTCTGGAGC
TAACCGAAGAGGAGCAGCTTGAGTTGGCCATCAAGAATTCCATAAACGAG
AACGGTGGTGGCGGAGGCGAAGGCAACCAGAAAAACGATAGTCCCGATGG
AGCCAGCGATAATGAGAGCCTTGAGGAGTTCGATGATGAGGAGCTCAAGG
GTGTGGCCGCCGCCTCTTTCGAGAATCACTTGGGCGAGGCCAAGACTGAA
TTGACTGCCCTTAAACTGCGCCTGCTCAACGCCGCCGGAACAGATGAGAT
GGTCCAGCTGCGCTGGCCCTCGGACACCAAACTGCAAACTTTGCGGCTGT
ACATCAGCCAGACGCACAAGCACATCCCTCAGGACGGCTACAAGCTCATT
TGCGCCTTCCCGCGAAAATTCCTGGAGGCGGAGCATAACGATAGCTCCCT
GAAGGAACTCGGCCTGCATCCATCGGCAAATCTGCATCTCACAAACGCGG
ACGATCAGTAGAAGTTTTCATGTGCATCTTATATTTATTTGCAAATTTTG
TCATCCCAAGAAAACCATTATCGTCCCAAAAAAAAAAAAAAACTTTCCAT
TTGAATTACATTTTTGTCCTAAAAATAAGTTATGTTGAATAAATCAACTA
GAAATGCTAAAAAAAAAAAAAAAAAA

LD38226.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8892-RC 2033 CG8892-RC 272..1980 1..1709 8545 100 Plus
CG8892-RB 1855 CG8892-RB 132..1840 1..1709 8545 100 Plus
CG8892.a 1812 CG8892.a 89..1797 1..1709 8545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4978637..4980344 1708..1 8540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4979536..4981244 1709..1 8545 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4979536..4981244 1709..1 8545 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:57:38 has no hits.

LD38226.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:58:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4978637..4980344 1..1708 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:28 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 1..1491 71..1561 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:34 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 1..1491 71..1561 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 1..1491 71..1561 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:05 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 1..1491 71..1561 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:32 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 1..1491 71..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:23 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 132..1839 1..1708 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:34 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 132..1839 1..1708 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 68..1775 1..1708 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:05 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 132..1839 1..1708 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:32 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
CG8892-RB 68..1775 1..1708 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4979537..4981244 1..1708 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4979537..4981244 1..1708 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4979537..4981244 1..1708 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:49 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4979537..4981244 1..1708 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:14 Download gff for LD38226.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4979537..4981244 1..1708 100   Minus

LD38226.hyp Sequence

Translation from 70 to 1560

> LD38226.hyp
MSTTEAPDALVEQVREVTACSMDEAKYYLSACANDVSAAVALFFEQAAST
STPSGSSAGAAAESLPVLDDEDEVRAPIAPVREQLILPEDDNFFASGSSS
RLSRVTQRVKVHPLRDFAREGALMEEQLQATGVYADPNRIRRGRAAQMVV
AGQAMALNRRSTTDTATSTSRLGDLFRPPTDILYSGSLTAAREFATKRQR
WLLVNVQDENFQSQTLNRDVWSDKELKKLIRRQFTFWQVDNDTSEGRRFV
AFYHCATLPYICVIDPRTGEEVWRSAEPKLENILPDLRQFLKEHRDFIQE
DAPGTSKRSATYIDDDEVPDPEASCSSTASSKEMPKKRAKVLELTEEEQL
ELAIKNSINENGGGGGEGNQKNDSPDGASDNESLEEFDDEELKGVAAASF
ENHLGEAKTELTALKLRLLNAAGTDEMVQLRWPSDTKLQTLRLYISQTHK
HIPQDGYKLICAFPRKFLEAEHNDSSLKELGLHPSANLHLTNADDQ*

LD38226.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8892-PD 496 CG8892-PD 1..496 1..496 2542 100 Plus
CG8892-PE 496 CG8892-PE 1..496 1..496 2542 100 Plus
CG8892-PB 496 CG8892-PB 1..496 1..496 2542 100 Plus
CG8892-PC 496 CG8892-PC 1..496 1..496 2542 100 Plus

LD38226.pep Sequence

Translation from 70 to 1560

> LD38226.pep
MSTTEAPDALVEQVREVTACSMDEAKYYLSACANDVSAAVALFFEQAAST
STPSGSSAGAAAESLPVLDDEDEVRAPIAPVREQLILPEDDNFFASGSSS
RLSRVTQRVKVHPLRDFAREGALMEEQLQATGVYADPNRIRRGRAAQMVV
AGQAMALNRRSTTDTATSTSRLGDLFRPPTDILYSGSLTAAREFATKRQR
WLLVNVQDENFQSQTLNRDVWSDKELKKLIRRQFTFWQVDNDTSEGRRFV
AFYHCATLPYICVIDPRTGEEVWRSAEPKLENILPDLRQFLKEHRDFIQE
DAPGTSKRSATYIDDDEVPDPEASCSSTASSKEMPKKRAKVLELTEEEQL
ELAIKNSINENGGGGGEGNQKNDSPDGASDNESLEEFDDEELKGVAAASF
ENHLGEAKTELTALKLRLLNAAGTDEMVQLRWPSDTKLQTLRLYISQTHK
HIPQDGYKLICAFPRKFLEAEHNDSSLKELGLHPSANLHLTNADDQ*

LD38226.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14163-PA 483 GF14163-PA 1..480 1..491 2054 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24329-PA 479 GG24329-PA 1..479 1..495 2177 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13802-PA 499 GH13802-PA 1..496 1..491 1473 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8892-PD 496 CG8892-PD 1..496 1..496 2542 100 Plus
CG8892-PE 496 CG8892-PE 1..496 1..496 2542 100 Plus
CG8892-PB 496 CG8892-PB 1..496 1..496 2542 100 Plus
CG8892-PC 496 CG8892-PC 1..496 1..496 2542 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18052-PA 493 GI18052-PA 10..490 8..491 1684 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26486-PA 500 GL26486-PA 4..497 3..491 1778 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21396-PA 500 GA21396-PA 4..497 3..491 1778 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18050-PA 496 GM18050-PA 1..496 1..496 2565 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22670-PA 496 GD22670-PA 1..496 1..496 2569 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22424-PA 482 GJ22424-PA 1..479 1..491 1660 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24459-PA 485 GK24459-PA 1..482 1..491 1502 65.8 Plus
Dwil\GK15701-PA 332 GK15701-PA 51..201 145..299 325 43.3 Plus
Dwil\GK15701-PA 332 GK15701-PA 227..317 401..491 285 59.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18709-PA 501 GE18709-PA 1..501 1..496 2241 94.2 Plus