Clone LD38241 Report

Search the DGRC for LD38241

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:382
Well:41
Vector:pOT2
Associated Gene/TranscriptCG2921-RA
Protein status:LD38241.pep: gold
Preliminary Size:1670
Sequenced Size:1569

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2921 2001-01-01 Release 2 assignment
CG2921 2001-09-19 Blastp of sequenced clone
CG2921 2003-01-01 Sim4 clustering to Release 3
CG2921 2008-04-29 Release 5.5 accounting
CG2921 2008-08-15 Release 5.9 accounting
CG2921 2008-12-18 5.12 accounting

Clone Sequence Records

LD38241.complete Sequence

1569 bp (1569 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058671

> LD38241.complete
CTAAAATGCACCAGTAAACGCACAAAAATCACAGACAAAAAAAAAAAGAA
AAGATGGAATCCTTATCGAAGGACCCTTCCTCGGAAGGCGAACTGCCCGA
GGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATATCGCGACTGTTGC
GAACGGAATTCGATGCCAAATACCAGATCGTAAACCTGCAGACTCCTCTC
AATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTGCCTTCTTCACACT
CCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATAGATACGCTGACAC
GGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAATGAATTTTCACAG
GCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGATCTCCAGGCTAAA
GTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTTACTGGCGAAGAAC
CCGATCGAGATGTTTGGAACAACTTTATCAGCAACCTGCCCGATGGCGAA
CGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGTGCTATCTGCACCG
CAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTGAAGTCATACGATT
TCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAGCATTGATGATATA
CTGGCCCTGACCAAGTACACACGACGATCAGAGAACAGCGTGGAGGTGTT
CGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGCAATGATGTGGCGA
CCGACACGGATACAGTAAAGCAATCGAACCGCCAGGTGCTGGAGAAAGTG
GCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAGCGGAGATTTGGAG
GTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAGGTGGACTTTATAC
TGGACAATGCAGGCTACGAACTCTTTAGCGACTTTATACTGGCTGAGTTC
ATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCCATGTGAAGGCCCA
CCCTTGGTTTGTCACCGATGTGACGGAGCGGGACTTCAAGTGGACGCTGG
AGTACTTGAGTGAGCATGCGGACTACATTATAAGTCTGATAGGAAAGAAG
TTCCTACAATTCATCGATGAGGGAAAGTTCGAACTGGCGCCAATCTCGCA
TTTCTGGACATCACCACATTCGTTTTACAGCATGGCGCAAATGGATCCAG
ATTTGTATAGTTCCCTGCAGCTATCCAAGCTGGTGGTCTTCAAGGGAGAG
CTCAACTATCGCAAGCTGCTGCAGGACGTCTGCTGGGACCCCACCCAGGA
ACTCAGCACCTGCCTCCGTGGCTTCCTTCCCAGCAACATTTGTGTGCTGC
GGCGGGTCAAGAGCGAAGTTATCTCCGGCCTGCCCGAGGGCGTTGGCCAG
GCGCTGAGTGTGAAGGATCCGCGCTGGATGGTCTCGGGCAGTTATGGGGT
CATTCAGTTCGTTGACGGAGCTCGTGAATTTGGCTATTAATCTTGTACAG
GCTGGTCAGCTTAAATTATTGGTAATAAATAGTCGTTACATATCTAGAAA
AAAAAAAAAAAAAAAAAAA

LD38241.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1800 CG2921-RA 183..1729 1..1549 7690 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17960352..17961086 1180..446 3585 99.2 Minus
chr2R 21145070 chr2R 17959923..17960292 1547..1178 1790 98.9 Minus
chr2R 21145070 chr2R 17961314..17961641 330..1 1555 98.8 Minus
chr2R 21145070 chr2R 17961140..17961257 447..330 590 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22073967..22074701 1180..446 3675 100 Minus
2R 25286936 2R 22073536..22073907 1549..1178 1860 100 Minus
2R 25286936 2R 22074929..22075256 330..1 1585 99.4 Minus
2R 25286936 2R 22074755..22074872 447..330 590 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22075166..22075900 1180..446 3675 100 Minus
2R 25260384 2R 22074735..22075106 1549..1178 1860 100 Minus
2R 25260384 2R 22076128..22076455 330..1 1595 99.3 Minus
2R 25260384 2R 22075954..22076071 447..330 590 100 Minus
Blast to na_te.dros performed 2019-03-16 20:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Fw3 3132 Fw3 FW3 3132bp 2638..2686 606..560 114 73.5 Minus

LD38241.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:16 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17959923..17960289 1181..1547 98 <- Minus
chr2R 17960352..17961084 448..1180 99 <- Minus
chr2R 17961140..17961256 331..447 100 <- Minus
chr2R 17961314..17961641 1..330 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:06 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 1..1437 54..1490 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 1..1437 54..1490 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:29 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 1..1437 54..1490 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:01 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 1..1437 54..1490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:25 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 82..1626 1..1547 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:05 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 82..1626 1..1547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:27 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 53..1597 1..1547 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:29 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 82..1626 1..1547 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:01 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 53..1597 1..1547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:16 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22074755..22074871 331..447 100 <- Minus
2R 22073538..22073904 1181..1547 100 <- Minus
2R 22073967..22074699 448..1180 100 <- Minus
2R 22074929..22075256 1..330 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:16 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22074755..22074871 331..447 100 <- Minus
2R 22073538..22073904 1181..1547 100 <- Minus
2R 22073967..22074699 448..1180 100 <- Minus
2R 22074929..22075256 1..330 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:16 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22074755..22074871 331..447 100 <- Minus
2R 22073538..22073904 1181..1547 100 <- Minus
2R 22073967..22074699 448..1180 100 <- Minus
2R 22074929..22075256 1..330 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:27 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961043..17961409 1181..1547 100 <- Minus
arm_2R 17961472..17962204 448..1180 100 <- Minus
arm_2R 17962260..17962376 331..447 100 <- Minus
arm_2R 17962434..17962761 1..330 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:55 Download gff for LD38241.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22074737..22075103 1181..1547 100 <- Minus
2R 22075166..22075898 448..1180 100 <- Minus
2R 22075954..22076070 331..447 100 <- Minus
2R 22076128..22076455 1..330 99   Minus

LD38241.hyp Sequence

Translation from 0 to 1489

> LD38241.hyp
LKCTSKRTKITDKKKEKMESLSKDPSSEGELPEDEGKTDSEPSKISRLLR
TEFDAKYQIVNLQTPLNAFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTR
DKSELVAQFASNEFSQAAREELKIIIGLISRLKYELQTDKSFQNFTGEEP
DRDVWNNFISNLPDGERSFYKASSLHAECYLHRKLHSFLENSVFLKSYDF
FAKVKEQALTDSIDDILALTKYTRRSENSVEVFDELLRINMWSNCNDVAT
DTDTVKQSNRQVLEKVANTDERVLVNQAAEIWRCLENPKLKKHKQVDFIL
DNAGYELFSDFILAEFMIEKGLADKVRFHVKAHPWFVTDVTERDFKWTLE
YLSEHADYIISLIGKKFLQFIDEGKFELAPISHFWTSPHSFYSMAQMDPD
LYSSLQLSKLVVFKGELNYRKLLQDVCWDPTQELSTCLRGFLPSNICVLR
RVKSEVISGLPEGVGQALSVKDPRWMVSGSYGVIQFVDGAREFGY*

LD38241.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 478 CG2921-PA 1..478 18..495 2482 100 Plus
CG11474-PC 436 CG11474-PC 5..433 51..486 989 42 Plus
CG11474-PA 436 CG11474-PA 5..433 51..486 989 42 Plus
CG4161-PB 484 CG4161-PB 22..449 64..491 978 44.3 Plus
CG4161-PA 484 CG4161-PA 22..449 64..491 978 44.3 Plus

LD38241.pep Sequence

Translation from 53 to 1489

> LD38241.pep
MESLSKDPSSEGELPEDEGKTDSEPSKISRLLRTEFDAKYQIVNLQTPLN
AFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTRDKSELVAQFASNEFSQA
AREELKIIIGLISRLKYELQTDKSFQNFTGEEPDRDVWNNFISNLPDGER
SFYKASSLHAECYLHRKLHSFLENSVFLKSYDFFAKVKEQALTDSIDDIL
ALTKYTRRSENSVEVFDELLRINMWSNCNDVATDTDTVKQSNRQVLEKVA
NTDERVLVNQAAEIWRCLENPKLKKHKQVDFILDNAGYELFSDFILAEFM
IEKGLADKVRFHVKAHPWFVTDVTERDFKWTLEYLSEHADYIISLIGKKF
LQFIDEGKFELAPISHFWTSPHSFYSMAQMDPDLYSSLQLSKLVVFKGEL
NYRKLLQDVCWDPTQELSTCLRGFLPSNICVLRRVKSEVISGLPEGVGQA
LSVKDPRWMVSGSYGVIQFVDGAREFGY*

LD38241.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11597-PA 484 GF11597-PA 25..484 20..478 1957 77 Plus
Dana\GF11598-PA 436 GF11598-PA 6..434 35..470 1026 42.2 Plus
Dana\GF15383-PA 486 GF15383-PA 23..449 47..474 973 42.4 Plus
Dana\GF11599-PA 460 GF11599-PA 22..456 34..477 731 35.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20722-PA 478 GG20722-PA 1..478 1..478 2385 92.5 Plus
Dere\GG20723-PA 436 GG20723-PA 5..434 34..470 1012 42.1 Plus
Dere\GG25159-PA 484 GG25159-PA 22..449 47..474 998 45 Plus
Dere\GG20724-PA 463 GG20724-PA 15..450 23..468 767 36.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21342-PA 475 GH21342-PA 21..475 21..478 1597 61.6 Plus
Dgri\GH13756-PA 458 GH13756-PA 9..440 42..474 963 43.2 Plus
Dgri\GH21343-PA 436 GH21343-PA 8..434 34..470 925 39.7 Plus
Dgri\GH21344-PA 466 GH21344-PA 5..465 3..474 663 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 478 CG2921-PA 1..478 1..478 2482 100 Plus
CG11474-PC 436 CG11474-PC 5..433 34..469 989 42 Plus
CG11474-PA 436 CG11474-PA 5..433 34..469 989 42 Plus
CG4161-PB 484 CG4161-PB 22..449 47..474 978 44.3 Plus
CG4161-PA 484 CG4161-PA 22..449 47..474 978 44.3 Plus
CG11475-PA 464 CG11475-PA 21..451 28..468 747 35.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20758-PA 473 GI20758-PA 2..473 7..478 1481 56.4 Plus
Dmoj\GI17896-PA 460 GI17896-PA 13..443 42..474 1003 44.2 Plus
Dmoj\GI20759-PA 437 GI20759-PA 8..435 34..470 936 39.8 Plus
Dmoj\GI20761-PA 468 GI20761-PA 32..467 34..474 738 35 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17494-PA 488 GL17494-PA 10..488 12..478 1768 68.5 Plus
Dper\GL26427-PA 505 GL26427-PA 27..455 47..474 1030 44.2 Plus
Dper\GL17495-PA 438 GL17495-PA 7..436 34..470 989 39.8 Plus
Dper\GL17496-PA 471 GL17496-PA 36..458 36..468 815 39.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15520-PA 480 GA15520-PA 10..480 12..478 1756 68.5 Plus
Dpse\GA17996-PA 503 GA17996-PA 27..455 47..474 1026 44 Plus
Dpse\GA11023-PA 438 GA11023-PA 7..436 34..470 978 39.6 Plus
Dpse\GA11024-PA 471 GA11024-PA 36..458 36..468 813 39.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15666-PA 478 GM15666-PA 1..478 1..478 2496 97.5 Plus
Dsec\GM15668-PA 436 GM15668-PA 5..434 34..470 1012 41.9 Plus
Dsec\GM16086-PA 483 GM16086-PA 22..449 47..474 997 44.6 Plus
Dsec\GM15669-PA 464 GM15669-PA 19..451 26..468 761 36.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25148-PA 478 GD25148-PA 1..478 1..478 2522 98.5 Plus
Dsim\GD24006-PA 483 GD24006-PA 22..449 47..474 1001 44.6 Plus
Dsim\GD25149-PA 436 GD25149-PA 5..434 34..470 993 41 Plus
Dsim\GD25150-PA 424 GD25150-PA 19..411 26..468 599 31.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20494-PA 472 GJ20494-PA 6..472 12..478 1644 62.7 Plus
Dvir\GJ17401-PA 463 GJ17401-PA 13..444 42..474 1023 44.2 Plus
Dvir\GJ20495-PA 438 GJ20495-PA 16..436 42..470 932 39.9 Plus
Dvir\GJ20496-PA 470 GJ20496-PA 35..469 35..474 787 36.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15628-PA 479 GK15628-PA 29..479 27..478 1673 65.2 Plus
Dwil\GK15629-PA 440 GK15629-PA 9..440 35..473 995 39.9 Plus
Dwil\GK18252-PA 503 GK18252-PA 21..463 41..474 973 41.5 Plus
Dwil\GK15630-PA 471 GK15630-PA 37..470 28..474 714 34.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13653-PA 476 GE13653-PA 1..476 1..478 2400 93.7 Plus
Dyak\GE13654-PA 436 GE13654-PA 5..434 34..470 1019 41.9 Plus
Dyak\GE20990-PA 484 GE20990-PA 22..449 47..474 994 44.6 Plus
Dyak\GE13655-PA 473 GE13655-PA 15..450 23..468 751 35.6 Plus