Clone LD38348 Report

Search the DGRC for LD38348

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:383
Well:48
Vector:pOT2
Associated Gene/Transcriptsu(f)-RE
Protein status:LD38348.pep: gold
Preliminary Size:2727
Sequenced Size:2609

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
su(f) 2008-04-29 Release 5.5 accounting
su(f) 2008-08-15 Release 5.9 accounting
su(f) 2008-12-18 5.12 accounting

Clone Sequence Records

LD38348.complete Sequence

2609 bp (2609 high quality bases) assembled on 2004-10-25

GenBank Submission: BT021384

> LD38348.complete
TAAAACCATATATCTTTTTTATTTATAGTTTATAATCAGTGACCGCTGTA
CTACACATCCCAAATCTTGGGATTTTAATGGTAAGGCCCGCGATGTGATT
GGCGATGACACTATCGCAGTTACATCCAATCAGTCGTCGATATCTAAGCA
GCCGCATTGCAACTTCTAAAAGAATTCGGAAAAGCGGCATCCAAGCGTTG
CTTTAGGTAATTGCGTAGCGAAAGTTCAACGGAAGAAAGGAACTTTCCCG
GGCCAAGGAGCAGCGCAAGCAGGACTCAACGACAATTTGCAAAGACTATT
AGCAATGTCTTCGGCCAGAGACCTTATCAAAGTCGACATAGAATGGGGCA
TGGAGCGCCTGGTGCGAGCTCAGCAAGTGGTGGAGCTGCGGCCCTATGAC
ATCGAGTCCTGGAGTGTCATGATCCGAGAGGCCCAAACGCGGCCAATCCA
CGAAGTACGCAGTCTTTACGAGTCGCTAGTTAATGTGTTTCCGACAACCG
CTCGGTACTGGAAGCTATACATTGAGATGGAGATGCGCAGCCGGTACTAT
GAACGCGTGGAGAAACTTTTTCAACGCTGCCTAGTCAAGATTTTGAACAT
CGACCTCTGGAAGCTCTATCTTACCTACGTGAAGGAAACCAAGTCGGGTC
TAAGTACTCACAAAGAAAAAATGGCCCAGGCTTATGATTTTGCACTGGAG
AAAATCGGCATGGATCTACACTCGTTCAGCATCTGGCAGGATTACATATA
CTTTCTGCGGGGCGTTGAAGCAGTGGGCAACTATGCAGAGAACCAAAAGA
TCACAGCAGTGCGCCGCGTCTATCAAAAGGCTGTAGTCACACCTATCGTG
GGCATCGAGCAGTTGTGGAAGGACTATATCGCATTCGAGCAAAACATAAA
CCCGATTATATCAGAGAAGATGAGTCTGGAGCGATCTAAGGATTACATGA
ACGCTCGTCGTGTTGCCAAAGAGTTGGAATACCACACAAAGGGTCTCAAT
CGCAATCTGCCAGCCGTCCCACCCACACTCACAAAAGAGGAGGTGAAGCA
AGTGGAGCTGTGGAAGCGCTTTATCACGTATGAGAAGTCTAATCCCTTGC
GCACTGAAGATACGGCCCTAGTAACCCGTCGTGTCATGTTCGCCACGGAG
CAATGTTTGCTGGTGCTCACCCACCACCCGGCAGTGTGGCACCAGGCCTC
CCAATTCCTGGACACCAGTGCTCGCGTGCTCACCGAAAAAGGCGACGTCC
AGGCGGCCAAGATTTTTGCGGACGAGTGTGCTAATATACTGGAACGGTCT
ATAAACGGCGTGCTAAACCGAAATGCGTTGCTATATTTTGCCTATGCGGA
CTTTGAAGAAGGACGGCTCAAGTACGAGAAGGTGCACACTATGTACAACA
AGCTGTTACAGTTGCCAGACATTGATCCCACATTGGTCTATGTTCAGTAC
ATGAAGTTCGCCCGTCGTGCTGAGGGGATCAAGTCGGCCCGTAGCATATT
TAAGAAAGCTCGGGAGGACGTAAGGTCGCGCTATCACATTTTCGTGGCCG
CTGCTTTAATGGAGTATTATTGCTCCAAGGACAAAGAAATTGCGTTCCGC
ATCTTCGAGCTGGGATTGAAGCGTTTTGGTGGCAGTCCAGAGTACGTGAT
GTGCTACATTGACTACCTGTCCCATCTAAACGAGGACAATAATACGCGCG
TCCTGTTTGAACGGGTACTTAGTTCAGGTGGTTTGTCGCCGCACAAGAGT
GTTGAGGTCTGGAATCGCTTCCTCGAGTTCGAATCTAATATTGGGGATCT
CTCCAGCATCGTTAAGGTCGAACGTCGCCGTAGTGCCGTTTTCGAAAACC
TTAAAGAGTATGAGGGCAAGGAGACCGCCCAGCTGGTTGACCGTTACAAA
TTTCTGGACCTTTACCCCTGCACCAGCACCGAGCTCAAGTCCATAGGATA
TGCTGAGAATGTGGGCATTATACTGAACAAGGTGGGTGGTGGAGCTCAAA
GCCAGAACACCGGAGAGGTCGAAACAGATAGCGAGGCAACGCCACCATTG
CCACGTCCGGATTTCTCCCAGATGATTCCATTCAAGCCGCGTCCATGTGC
TCATCCTGGTGCCCATCCACTTGCAGGTGGTGTATTTCCGCAGCCGCCAG
CTCTGGCCGCTTTGTGCGCCACCCTGCCTCCACCGAACTCCTTCCGTGGA
CCGTTCGTCAGCGTAGAGCTACTATTCGACATTTTCATGCGTCTCAATCT
TCCGGACTCTGCACCGCAACCGAATGGAGACAACGAATTGTCGCCTAAGA
TCTTCGATCTGGCCAAGTCGGTTCACTGGATCGTGGATACAAGTACGTAT
ACGGGGGTGCAGCACAGTGTTACGGCCGTTCCACCGCGCCGGCGACGACT
GCTGCCTGGGGGCGATGATAGTGACGACGAACTGCAGACCGCTGTGCCGC
CCTCCCACGATATATATCGCCTGCGTCAGCTAAAGCGTTTCGCCAAGTCT
AATTAAGAAACGTTAAAAAAAAACCGATTTTTACTTTTTTCTTTCAATTA
ATTTACAAGAAACAAGAAATCCCAATAAAGCAAGCCATATTAAAAAAAAA
AAAAAAAAA

LD38348.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
su(f)-RE 2947 su(f)-RE 59..2651 1..2593 12965 100 Plus
su(f).f 3361 su(f).f 59..2651 1..2593 12965 100 Plus
su(f).e 3239 su(f).e 59..2651 1..2593 12965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrXHet 204175 chrXHet 78349..78763 1435..1849 2075 100 Plus
chrXHet 204175 chrXHet 76267..76607 1..341 1705 100 Plus
chrXHet 204175 chrXHet 79735..80067 2259..2591 1665 100 Plus
chrXHet 204175 chrXHet 76668..76990 341..663 1615 100 Plus
chrXHet 204175 chrXHet 77489..77793 940..1244 1525 100 Plus
chrXHet 204175 chrXHet 79375..79677 1956..2258 1515 100 Plus
chrXHet 204175 chrXHet 77155..77431 664..940 1385 100 Plus
chrXHet 204175 chrXHet 78093..78286 1244..1437 970 100 Plus
chrXHet 204175 chrXHet 78816..78927 1846..1957 545 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23099474..23099888 1435..1849 2075 100 Plus
X 23542271 X 23097392..23097732 1..341 1705 100 Plus
X 23542271 X 23100860..23101194 2259..2593 1675 100 Plus
X 23542271 X 23097793..23098115 341..663 1615 100 Plus
X 23542271 X 23098614..23098918 940..1244 1525 100 Plus
X 23542271 X 23100500..23100802 1956..2258 1515 100 Plus
X 23542271 X 23098280..23098556 664..940 1385 100 Plus
X 23542271 X 23099218..23099411 1244..1437 970 100 Plus
X 23542271 X 23099941..23100052 1846..1957 545 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 23084566..23084980 1435..1849 2075 100 Plus
X 23527363 X 23082484..23082824 1..341 1705 100 Plus
X 23527363 X 23085952..23086286 2259..2593 1675 100 Plus
X 23527363 X 23082885..23083207 341..663 1615 100 Plus
X 23527363 X 23083706..23084010 940..1244 1525 100 Plus
X 23527363 X 23085592..23085894 1956..2258 1515 100 Plus
X 23527363 X 23083372..23083648 664..940 1385 100 Plus
X 23527363 X 23084310..23084503 1244..1437 970 100 Plus
X 23527363 X 23085033..23085144 1846..1957 545 99.1 Plus
Blast to na_te.dros performed on 2019-03-16 01:28:22 has no hits.

LD38348.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:29:23 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
chrXHet 76267..76606 1..340 100 -> Plus
chrXHet 76668..76990 341..663 100 -> Plus
chrXHet 77155..77430 664..939 100 -> Plus
chrXHet 77489..77792 940..1243 100 -> Plus
chrXHet 78093..78284 1244..1435 100 -> Plus
chrXHet 78350..78763 1436..1849 100 -> Plus
chrXHet 78820..78927 1850..1957 100 -> Plus
chrXHet 79377..79677 1958..2258 100 -> Plus
chrXHet 79735..80067 2259..2591 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:33 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2202 305..2506 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:47:17 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2202 305..2506 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:28 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2202 305..2506 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:28:16 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2202 305..2506 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:34:31 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2202 305..2506 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:56:31 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2591 1..2591 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:47:17 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2591 1..2591 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:28 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2574 18..2591 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:28:16 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2591 1..2591 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:34:31 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
su(f)-RE 1..2574 18..2591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:23 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
X 23098614..23098917 940..1243 100 -> Plus
X 23098280..23098555 664..939 100 -> Plus
X 23097793..23098115 341..663 100 -> Plus
X 23097392..23097731 1..340 100 -> Plus
X 23099218..23099409 1244..1435 100 -> Plus
X 23099475..23099888 1436..1849 100 -> Plus
X 23099945..23100052 1850..1957 100 -> Plus
X 23100502..23100802 1958..2258 100 -> Plus
X 23100860..23101192 2259..2591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:23 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
X 23098614..23098917 940..1243 100 -> Plus
X 23098280..23098555 664..939 100 -> Plus
X 23097793..23098115 341..663 100 -> Plus
X 23097392..23097731 1..340 100 -> Plus
X 23099218..23099409 1244..1435 100 -> Plus
X 23099475..23099888 1436..1849 100 -> Plus
X 23099945..23100052 1850..1957 100 -> Plus
X 23100502..23100802 1958..2258 100 -> Plus
X 23100860..23101192 2259..2591 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:23 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
X 23098614..23098917 940..1243 100 -> Plus
X 23098280..23098555 664..939 100 -> Plus
X 23097793..23098115 341..663 100 -> Plus
X 23097392..23097731 1..340 100 -> Plus
X 23099218..23099409 1244..1435 100 -> Plus
X 23099475..23099888 1436..1849 100 -> Plus
X 23099945..23100052 1850..1957 100 -> Plus
X 23100502..23100802 1958..2258 100 -> Plus
X 23100860..23101192 2259..2591 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:28 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 78036..78227 1244..1435 100 -> Plus
XHet 76210..76549 1..340 100 -> Plus
XHet 76611..76933 341..663 100 -> Plus
XHet 77098..77373 664..939 100 -> Plus
XHet 77432..77735 940..1243 100 -> Plus
XHet 78293..78706 1436..1849 100 -> Plus
XHet 78763..78870 1850..1957 100 -> Plus
XHet 79320..79620 1958..2258 100 -> Plus
XHet 79678..80010 2259..2591 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:03:42 Download gff for LD38348.complete
Subject Subject Range Query Range Percent Splice Strand
X 23085594..23085894 1958..2258 100 -> Plus
X 23085952..23086284 2259..2591 100   Plus
X 23082484..23082823 1..340 100 -> Plus
X 23082885..23083207 341..663 100 -> Plus
X 23083372..23083647 664..939 100 -> Plus
X 23083706..23084009 940..1243 100 -> Plus
X 23084310..23084501 1244..1435 100 -> Plus
X 23084567..23084980 1436..1849 100 -> Plus
X 23085037..23085144 1850..1957 100 -> Plus

LD38348.pep Sequence

Translation from 304 to 2505

> LD38348.pep
MSSARDLIKVDIEWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHE
VRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNID
LWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYF
LRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINP
IISEKMSLERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQV
ELWKRFITYEKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQ
FLDTSARVLTEKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADF
EEGRLKYEKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKSARSIFK
KAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMC
YIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLS
SIVKVERRRSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYA
ENVGIILNKVGGGAQSQNTGEVETDSEATPPLPRPDFSQMIPFKPRPCAH
PGAHPLAGGVFPQPPALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLP
DSAPQPNGDNELSPKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRRRRLL
PGGDDSDDELQTAVPPSHDIYRLRQLKRFAKSN*

LD38348.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19444-PA 638 GF19444-PA 1..314 1..314 1686 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19763-PA 733 GG19763-PA 1..733 1..733 3920 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12049-PA 736 GH12049-PA 1..736 1..733 3699 95 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
su(f)-PG 733 CG17170-PG 1..733 1..733 3819 100 Plus
su(f)-PE 733 CG17170-PE 1..733 1..733 3819 100 Plus
su(f)-PF 765 CG17170-PF 1..765 1..733 3776 95.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21567-PA 730 GI21567-PA 1..730 1..733 3769 95.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18331-PA 895 GL18331-PA 171..895 8..733 3687 93.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27548-PA 732 GA27548-PA 1..732 1..733 3728 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13282-PA 733 GM13282-PA 1..733 1..733 3935 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16693-PA 732 GJ16693-PA 1..315 1..315 1683 98.1 Plus
Dvir\GJ16693-PA 732 GJ16693-PA 248..417 481..651 399 59.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25707-PA 741 GK25707-PA 1..741 1..733 3736 94.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15242-PA 676 GE15242-PA 1..313 1..313 1691 99.4 Plus

LD38348.hyp Sequence

Translation from 304 to 2505

> LD38348.hyp
MSSARDLIKVDIEWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHE
VRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNID
LWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYF
LRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINP
IISEKMSLERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQV
ELWKRFITYEKSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQ
FLDTSARVLTEKGDVQAAKIFADECANILERSINGVLNRNALLYFAYADF
EEGRLKYEKVHTMYNKLLQLPDIDPTLVYVQYMKFARRAEGIKSARSIFK
KAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMC
YIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLS
SIVKVERRRSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYA
ENVGIILNKVGGGAQSQNTGEVETDSEATPPLPRPDFSQMIPFKPRPCAH
PGAHPLAGGVFPQPPALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLP
DSAPQPNGDNELSPKIFDLAKSVHWIVDTSTYTGVQHSVTAVPPRRRRLL
PGGDDSDDELQTAVPPSHDIYRLRQLKRFAKSN*

LD38348.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
su(f)-PG 733 CG17170-PG 1..733 1..733 3819 100 Plus
su(f)-PE 733 CG17170-PE 1..733 1..733 3819 100 Plus
su(f)-PF 765 CG17170-PF 1..765 1..733 3776 95.8 Plus