Clone LD38352 Report

Search the DGRC for LD38352

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:383
Well:52
Vector:pOT2
Associated Gene/Transcriptvret-RA
Protein status:LD38352.pep: gold
Preliminary Size:2490
Sequenced Size:2329

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4771 2001-01-01 Release 2 assignment
CG4771 2001-09-19 Blastp of sequenced clone
CG4771 2003-01-01 Sim4 clustering to Release 3
CG4771 2008-04-29 Release 5.5 accounting
CG4771 2008-08-15 Release 5.9 accounting
CG4771 2008-12-18 5.12 accounting

Clone Sequence Records

LD38352.complete Sequence

2329 bp (2329 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058673

> LD38352.complete
CAATTCGAATTCAGGTGAAATTTTAAAGCTCAGGTGCAATGGAATCCGAA
TCCTCGCAGGATGATTGGTCCGCATTCGATCCAATGTCCAGGGAATACTA
TGACCAAGTGGGCAACCGTTACACTAACGAGTCTGGCCAGAAACTAATCA
TGGAAGCCCCGCTGCCGCCAAAGGACGAAAAGGAGCAACGTGCCACCAGG
CAGGCGAAGTATCCATACTTGGTGGTTCCAAAAAGCAGTCCCTATGTGAC
CGAAAAGATGCTAATCAACTTCTTCGGTCGGGCGCTCATCAAGGAGATGG
AGTTCCGCCGCTTGTCACGCGTATACTTTGTCTACTTTGAAAATATCGCA
TCCCTGGAGACAGCGCAACAGCGGGTGCAGCGTTACCCGAACCTGATCAA
GTGCATCACTGGTCGCCCGCAAAAGGAGCGGGAAATCACCAGCGATCCGG
TGACTTCCACTGAGCCAATGCCAACACCAGGCCCAGCAATTTCGGCCACT
GAACGTACGCCAGTGAATCACAACAGAGAGGTTCCGATCTCGACCGGAGG
ACAAAATCATCCGGAGTTCTTCCGGCCACCGCTGGTCACCAAAGATGATT
ACAAAAGAGGTTCATTGTTGGCCACCAACGACCCCATTCAACGCTATCTC
AATGTAAAGTACGAATTCGCACTGGAGCGCCATGATATCTACAAGCTTAA
GGATGAGACCAGAATCCCGCAGGTCGTTCTGCACTTTCGTTCGGGCAGAA
CGATTCCTTTGTCAACGGTTGCTGTCACCGAAGAGGATAAAACTAAAAGC
CTGCTGGAAGACGGCGTCAGCAAGTGCGTGGTTTGTCAAAACTGGACAGA
CACTTTCTGCAAGCTGTGCAAAATGCCCTTCTGCAATGCCTCCTGTTTCG
CCGATGTGGCAGAGCAGCATAAGCAAGCTTGCGGCAAGGGTGAGATACTT
AACCTTGACGAAAAGGTGGGCCGGAAGTACCCCAAACCCGGCTTGCCGCC
GTCTGGATCTAAAGTGAGAATTACTGCATTCGAGCAGACTAACGTGGTCT
ATGTGCGCTCGGCGGACATTCAGATTGACATCGCCTATTATACAGTTCTC
ACGGAGGTAATGATGCTGGGCAAAGATGCCTCCAAACTGCAGAGTACGCC
AGTCTGCGGACAAATTGTGCTCTACAAGTTCGAGGGACATATGTCGCGCG
CCATGGTGCTAAACGTGGATAATATCAAGGAAATCTATGTAGTGTTCATT
GATTTCGGAAGTGTTGAAGTCACGCAGCTGGAAAGACTGTATGAATGCAG
TTCGTATTTAGCTGGTTTGACCTGCTATCCCGTAGCCGTTAAATTACGCG
GAGTTCCCAGGCGCTTTGTGGGTCCCAACATAAGGGAAGTCATGTACGAA
CTCGACCAGTCCCTAGTTTTTAATATCAAGTACTCGTCACGTGAGTACGA
TACCAGCAAGGGCATGCAGGTCGTGGTGATGACCGAGATCGATATTAATA
GGAGCCTCAACCGCCTTTTCAAGACCATCCTAACTCCTGTTGAGCCGTCT
GTCTCGGACTTGGGATACAAAGAGGACTGTCTTCCATACATTCCCTTGCA
CTGCGGAAAGAACATAAATGTAGTGGTAATGGACAACACATTCATCCAGT
GCGGCTTTATCTACTGCACCTCCATAGATCTGGCTTACGAAGTCACCAAA
ATGCAGCGAGACATACAGGAGTATGGTGAAAAGATTGCCAAGTGCGCAAC
CTACGCACCGCCGATAAATGAGCTTTGCATAGCTAAGTACGAAGGCAAAT
GGCGTCGAGGTCTCTCTGTGGAGTTAGTAGGAGATGGTTATCCCAGCATT
TTGTTCATTGACTACGGAAACATAGTGCCAACACATGTCACCGACATACG
TCCCTATCCGCCGCAGTTTATCTTCCCTATAATGACCACACAGTTGGATT
TAATTGGAGTGCCTGAGAAGCCCACCGATGAGCAGATCAAATGGCTGGAT
AAAAATTATCCCATTGGGTCCGTTATCACCTGCAGCGAAATCACTTTCGA
CGAGGAAACAAATAGCTACTCCACTCGCATTGAAAAACTGCAGGAGTTCT
TAAGTTTGGACTAAGTTCTCAAAAGGTTGATTCCGCGAAATAGTTCAGAA
CTAATTATGGCCAAAAAAAAGCACAAATCTTCCAGGTTAACTCAACTGCT
AAGCATTTAGTTCAACAAAATAATTTTGTTTACATTTATATTCTTGAAGT
TAACGTTTTGTTTGTTTAAGTTTTTACTCTCACTTTTCTTGAATAAACCA
GTTGAATACAAAAAAAAAAAAAAAAAAAA

LD38352.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4771-RA 2337 CG4771-RA 19..2329 1..2311 11555 100 Plus
CG6985.b 1901 CG6985.b 1614..1901 2311..2024 1440 100 Minus
CG6985-RA 1903 CG6985-RA 1616..1903 2311..2024 1440 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18567333..18568149 1577..761 4070 99.9 Minus
chr3R 27901430 chr3R 18568213..18568625 762..350 1975 98.5 Minus
chr3R 27901430 chr3R 18568689..18569037 349..1 1700 99.1 Minus
chr3R 27901430 chr3R 18566424..18566776 2309..1956 1660 98.6 Minus
chr3R 27901430 chr3R 18566829..18567023 1957..1763 975 100 Minus
chr3R 27901430 chr3R 18567079..18567264 1763..1578 870 97.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22743858..22744674 1577..761 4085 100 Minus
3R 32079331 3R 22744738..22745150 762..350 2065 100 Minus
3R 32079331 3R 22742952..22743307 2311..1956 1780 100 Minus
3R 32079331 3R 22745214..22745562 349..1 1745 100 Minus
3R 32079331 3R 22743360..22743554 1957..1763 975 100 Minus
3R 32079331 3R 22743610..22743795 1763..1578 930 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22484689..22485505 1577..761 4085 100 Minus
3R 31820162 3R 22485569..22485981 762..350 2065 100 Minus
3R 31820162 3R 22483783..22484138 2311..1956 1780 100 Minus
3R 31820162 3R 22486045..22486393 349..1 1745 100 Minus
3R 31820162 3R 22484191..22484385 1957..1763 975 100 Minus
3R 31820162 3R 22484441..22484626 1763..1578 930 100 Minus
Blast to na_te.dros performed 2019-03-15 16:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 3434..3488 2263..2208 116 74.6 Minus

LD38352.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:48 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18568689..18569037 1..349 99   Minus
chr3R 18566424..18566775 1957..2309 98 <- Minus
chr3R 18566830..18567023 1763..1956 100 <- Minus
chr3R 18567080..18567264 1578..1762 97 <- Minus
chr3R 18567333..18568149 761..1577 99 <- Minus
chr3R 18568215..18568625 350..760 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:34 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 1..2076 39..2114 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:41 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 1..2076 39..2114 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:52:58 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
vret-RA 1..2076 39..2114 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:05 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 1..2076 39..2114 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:07 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
vret-RA 1..2076 39..2114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:52 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 11..2319 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:41 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 11..2319 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:58 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
vret-RA 11..2319 1..2309 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:06 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
CG4771-RA 11..2319 1..2309 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:07 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
vret-RA 20..2328 1..2309 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:48 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742954..22743306 1957..2309 100 <- Minus
3R 22743361..22743554 1763..1956 100 <- Minus
3R 22743611..22743795 1578..1762 100 <- Minus
3R 22743858..22744674 761..1577 100 <- Minus
3R 22744740..22745150 350..760 100 <- Minus
3R 22745214..22745562 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:48 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742954..22743306 1957..2309 100 <- Minus
3R 22743361..22743554 1763..1956 100 <- Minus
3R 22743611..22743795 1578..1762 100 <- Minus
3R 22743858..22744674 761..1577 100 <- Minus
3R 22744740..22745150 350..760 100 <- Minus
3R 22745214..22745562 1..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:48 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22742954..22743306 1957..2309 100 <- Minus
3R 22743361..22743554 1763..1956 100 <- Minus
3R 22743611..22743795 1578..1762 100 <- Minus
3R 22743858..22744674 761..1577 100 <- Minus
3R 22744740..22745150 350..760 100 <- Minus
3R 22745214..22745562 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:58 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18568676..18569028 1957..2309 100 <- Minus
arm_3R 18569083..18569276 1763..1956 100 <- Minus
arm_3R 18569333..18569517 1578..1762 100 <- Minus
arm_3R 18569580..18570396 761..1577 100 <- Minus
arm_3R 18570462..18570872 350..760 100 <- Minus
arm_3R 18570936..18571284 1..349 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:27 Download gff for LD38352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22485571..22485981 350..760 100 <- Minus
3R 22486045..22486393 1..349 100   Minus
3R 22483785..22484137 1957..2309 100 <- Minus
3R 22484192..22484385 1763..1956 100 <- Minus
3R 22484442..22484626 1578..1762 100 <- Minus
3R 22484689..22485505 761..1577 100 <- Minus

LD38352.pep Sequence

Translation from 38 to 2113

> LD38352.pep
MESESSQDDWSAFDPMSREYYDQVGNRYTNESGQKLIMEAPLPPKDEKEQ
RATRQAKYPYLVVPKSSPYVTEKMLINFFGRALIKEMEFRRLSRVYFVYF
ENIASLETAQQRVQRYPNLIKCITGRPQKEREITSDPVTSTEPMPTPGPA
ISATERTPVNHNREVPISTGGQNHPEFFRPPLVTKDDYKRGSLLATNDPI
QRYLNVKYEFALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED
KTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGK
GEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY
YTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMSRAMVLNVDNIKEIY
VVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIRE
VMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTP
VEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTSIDLAY
EVTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEGKWRRGLSVELVGDG
YPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEKPTDEQI
KWLDKNYPIGSVITCSEITFDEETNSYSTRIEKLQEFLSLD*

LD38352.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18289-PA 444 GF18289-PA 101..436 305..640 1093 58.3 Plus
Dana\GF18289-PA 444 GF18289-PA 2..116 5..127 198 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12487-PA 689 GG12487-PA 2..689 4..691 3177 85 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18662-PA 669 GH18662-PA 2..668 5..688 1779 49.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
vret-PA 691 CG4771-PA 1..691 1..691 3639 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24347-PA 674 GI24347-PA 4..670 6..687 1784 49.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23777-PA 675 GL23777-PA 6..675 8..689 1427 43.5 Plus
Dper\GL15862-PA 522 GL15862-PA 2..522 174..688 1323 50 Plus
Dper\GL13262-PA 108 GL13262-PA 1..108 581..689 331 57.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18420-PA 703 GA18420-PA 6..703 8..689 1547 45.1 Plus
Dpse\GA23527-PA 695 GA23527-PA 6..692 8..690 1501 44.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23618-PA 691 GM23618-PA 1..691 1..691 3495 94.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18427-PA 691 GD18427-PA 1..691 1..691 3462 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24358-PA 677 GJ24358-PA 5..676 7..688 1792 51.2 Plus
Dvir\GJ24407-PA 587 GJ24407-PA 167..568 308..670 240 21.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11625-PA 706 GK11625-PA 9..705 8..688 1671 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24008-PA 689 GE24008-PA 2..689 4..691 3180 84.4 Plus

LD38352.hyp Sequence

Translation from 38 to 2113

> LD38352.hyp
MESESSQDDWSAFDPMSREYYDQVGNRYTNESGQKLIMEAPLPPKDEKEQ
RATRQAKYPYLVVPKSSPYVTEKMLINFFGRALIKEMEFRRLSRVYFVYF
ENIASLETAQQRVQRYPNLIKCITGRPQKEREITSDPVTSTEPMPTPGPA
ISATERTPVNHNREVPISTGGQNHPEFFRPPLVTKDDYKRGSLLATNDPI
QRYLNVKYEFALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED
KTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGK
GEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY
YTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMSRAMVLNVDNIKEIY
VVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIRE
VMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTP
VEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTSIDLAY
EVTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEGKWRRGLSVELVGDG
YPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEKPTDEQI
KWLDKNYPIGSVITCSEITFDEETNSYSTRIEKLQEFLSLD*

LD38352.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
vret-PA 691 CG4771-PA 1..691 1..691 3639 100 Plus