BDGP Sequence Production Resources |
Search the DGRC for LD38352
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 383 |
Well: | 52 |
Vector: | pOT2 |
Associated Gene/Transcript | vret-RA |
Protein status: | LD38352.pep: gold |
Preliminary Size: | 2490 |
Sequenced Size: | 2329 |
Gene | Date | Evidence |
---|---|---|
CG4771 | 2001-01-01 | Release 2 assignment |
CG4771 | 2001-09-19 | Blastp of sequenced clone |
CG4771 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4771 | 2008-04-29 | Release 5.5 accounting |
CG4771 | 2008-08-15 | Release 5.9 accounting |
CG4771 | 2008-12-18 | 5.12 accounting |
2329 bp (2329 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058673
> LD38352.complete CAATTCGAATTCAGGTGAAATTTTAAAGCTCAGGTGCAATGGAATCCGAA TCCTCGCAGGATGATTGGTCCGCATTCGATCCAATGTCCAGGGAATACTA TGACCAAGTGGGCAACCGTTACACTAACGAGTCTGGCCAGAAACTAATCA TGGAAGCCCCGCTGCCGCCAAAGGACGAAAAGGAGCAACGTGCCACCAGG CAGGCGAAGTATCCATACTTGGTGGTTCCAAAAAGCAGTCCCTATGTGAC CGAAAAGATGCTAATCAACTTCTTCGGTCGGGCGCTCATCAAGGAGATGG AGTTCCGCCGCTTGTCACGCGTATACTTTGTCTACTTTGAAAATATCGCA TCCCTGGAGACAGCGCAACAGCGGGTGCAGCGTTACCCGAACCTGATCAA GTGCATCACTGGTCGCCCGCAAAAGGAGCGGGAAATCACCAGCGATCCGG TGACTTCCACTGAGCCAATGCCAACACCAGGCCCAGCAATTTCGGCCACT GAACGTACGCCAGTGAATCACAACAGAGAGGTTCCGATCTCGACCGGAGG ACAAAATCATCCGGAGTTCTTCCGGCCACCGCTGGTCACCAAAGATGATT ACAAAAGAGGTTCATTGTTGGCCACCAACGACCCCATTCAACGCTATCTC AATGTAAAGTACGAATTCGCACTGGAGCGCCATGATATCTACAAGCTTAA GGATGAGACCAGAATCCCGCAGGTCGTTCTGCACTTTCGTTCGGGCAGAA CGATTCCTTTGTCAACGGTTGCTGTCACCGAAGAGGATAAAACTAAAAGC CTGCTGGAAGACGGCGTCAGCAAGTGCGTGGTTTGTCAAAACTGGACAGA CACTTTCTGCAAGCTGTGCAAAATGCCCTTCTGCAATGCCTCCTGTTTCG CCGATGTGGCAGAGCAGCATAAGCAAGCTTGCGGCAAGGGTGAGATACTT AACCTTGACGAAAAGGTGGGCCGGAAGTACCCCAAACCCGGCTTGCCGCC GTCTGGATCTAAAGTGAGAATTACTGCATTCGAGCAGACTAACGTGGTCT ATGTGCGCTCGGCGGACATTCAGATTGACATCGCCTATTATACAGTTCTC ACGGAGGTAATGATGCTGGGCAAAGATGCCTCCAAACTGCAGAGTACGCC AGTCTGCGGACAAATTGTGCTCTACAAGTTCGAGGGACATATGTCGCGCG CCATGGTGCTAAACGTGGATAATATCAAGGAAATCTATGTAGTGTTCATT GATTTCGGAAGTGTTGAAGTCACGCAGCTGGAAAGACTGTATGAATGCAG TTCGTATTTAGCTGGTTTGACCTGCTATCCCGTAGCCGTTAAATTACGCG GAGTTCCCAGGCGCTTTGTGGGTCCCAACATAAGGGAAGTCATGTACGAA CTCGACCAGTCCCTAGTTTTTAATATCAAGTACTCGTCACGTGAGTACGA TACCAGCAAGGGCATGCAGGTCGTGGTGATGACCGAGATCGATATTAATA GGAGCCTCAACCGCCTTTTCAAGACCATCCTAACTCCTGTTGAGCCGTCT GTCTCGGACTTGGGATACAAAGAGGACTGTCTTCCATACATTCCCTTGCA CTGCGGAAAGAACATAAATGTAGTGGTAATGGACAACACATTCATCCAGT GCGGCTTTATCTACTGCACCTCCATAGATCTGGCTTACGAAGTCACCAAA ATGCAGCGAGACATACAGGAGTATGGTGAAAAGATTGCCAAGTGCGCAAC CTACGCACCGCCGATAAATGAGCTTTGCATAGCTAAGTACGAAGGCAAAT GGCGTCGAGGTCTCTCTGTGGAGTTAGTAGGAGATGGTTATCCCAGCATT TTGTTCATTGACTACGGAAACATAGTGCCAACACATGTCACCGACATACG TCCCTATCCGCCGCAGTTTATCTTCCCTATAATGACCACACAGTTGGATT TAATTGGAGTGCCTGAGAAGCCCACCGATGAGCAGATCAAATGGCTGGAT AAAAATTATCCCATTGGGTCCGTTATCACCTGCAGCGAAATCACTTTCGA CGAGGAAACAAATAGCTACTCCACTCGCATTGAAAAACTGCAGGAGTTCT TAAGTTTGGACTAAGTTCTCAAAAGGTTGATTCCGCGAAATAGTTCAGAA CTAATTATGGCCAAAAAAAAGCACAAATCTTCCAGGTTAACTCAACTGCT AAGCATTTAGTTCAACAAAATAATTTTGTTTACATTTATATTCTTGAAGT TAACGTTTTGTTTGTTTAAGTTTTTACTCTCACTTTTCTTGAATAAACCA GTTGAATACAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4771-RA | 2337 | CG4771-RA | 19..2329 | 1..2311 | 11555 | 100 | Plus |
CG6985.b | 1901 | CG6985.b | 1614..1901 | 2311..2024 | 1440 | 100 | Minus |
CG6985-RA | 1903 | CG6985-RA | 1616..1903 | 2311..2024 | 1440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18567333..18568149 | 1577..761 | 4070 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 18568213..18568625 | 762..350 | 1975 | 98.5 | Minus |
chr3R | 27901430 | chr3R | 18568689..18569037 | 349..1 | 1700 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 18566424..18566776 | 2309..1956 | 1660 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 18566829..18567023 | 1957..1763 | 975 | 100 | Minus |
chr3R | 27901430 | chr3R | 18567079..18567264 | 1763..1578 | 870 | 97.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22743858..22744674 | 1577..761 | 4085 | 100 | Minus |
3R | 32079331 | 3R | 22744738..22745150 | 762..350 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 22742952..22743307 | 2311..1956 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 22745214..22745562 | 349..1 | 1745 | 100 | Minus |
3R | 32079331 | 3R | 22743360..22743554 | 1957..1763 | 975 | 100 | Minus |
3R | 32079331 | 3R | 22743610..22743795 | 1763..1578 | 930 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22484689..22485505 | 1577..761 | 4085 | 100 | Minus |
3R | 31820162 | 3R | 22485569..22485981 | 762..350 | 2065 | 100 | Minus |
3R | 31820162 | 3R | 22483783..22484138 | 2311..1956 | 1780 | 100 | Minus |
3R | 31820162 | 3R | 22486045..22486393 | 349..1 | 1745 | 100 | Minus |
3R | 31820162 | 3R | 22484191..22484385 | 1957..1763 | 975 | 100 | Minus |
3R | 31820162 | 3R | 22484441..22484626 | 1763..1578 | 930 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tabor | 7345 | Tabor TABOR 7345bp | 3434..3488 | 2263..2208 | 116 | 74.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18568689..18569037 | 1..349 | 99 | Minus | |
chr3R | 18566424..18566775 | 1957..2309 | 98 | <- | Minus |
chr3R | 18566830..18567023 | 1763..1956 | 100 | <- | Minus |
chr3R | 18567080..18567264 | 1578..1762 | 97 | <- | Minus |
chr3R | 18567333..18568149 | 761..1577 | 99 | <- | Minus |
chr3R | 18568215..18568625 | 350..760 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 1..2076 | 39..2114 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 1..2076 | 39..2114 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vret-RA | 1..2076 | 39..2114 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 1..2076 | 39..2114 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vret-RA | 1..2076 | 39..2114 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 11..2319 | 1..2309 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 11..2319 | 1..2309 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vret-RA | 11..2319 | 1..2309 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4771-RA | 11..2319 | 1..2309 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vret-RA | 20..2328 | 1..2309 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22742954..22743306 | 1957..2309 | 100 | <- | Minus |
3R | 22743361..22743554 | 1763..1956 | 100 | <- | Minus |
3R | 22743611..22743795 | 1578..1762 | 100 | <- | Minus |
3R | 22743858..22744674 | 761..1577 | 100 | <- | Minus |
3R | 22744740..22745150 | 350..760 | 100 | <- | Minus |
3R | 22745214..22745562 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22742954..22743306 | 1957..2309 | 100 | <- | Minus |
3R | 22743361..22743554 | 1763..1956 | 100 | <- | Minus |
3R | 22743611..22743795 | 1578..1762 | 100 | <- | Minus |
3R | 22743858..22744674 | 761..1577 | 100 | <- | Minus |
3R | 22744740..22745150 | 350..760 | 100 | <- | Minus |
3R | 22745214..22745562 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22742954..22743306 | 1957..2309 | 100 | <- | Minus |
3R | 22743361..22743554 | 1763..1956 | 100 | <- | Minus |
3R | 22743611..22743795 | 1578..1762 | 100 | <- | Minus |
3R | 22743858..22744674 | 761..1577 | 100 | <- | Minus |
3R | 22744740..22745150 | 350..760 | 100 | <- | Minus |
3R | 22745214..22745562 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18568676..18569028 | 1957..2309 | 100 | <- | Minus |
arm_3R | 18569083..18569276 | 1763..1956 | 100 | <- | Minus |
arm_3R | 18569333..18569517 | 1578..1762 | 100 | <- | Minus |
arm_3R | 18569580..18570396 | 761..1577 | 100 | <- | Minus |
arm_3R | 18570462..18570872 | 350..760 | 100 | <- | Minus |
arm_3R | 18570936..18571284 | 1..349 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22485571..22485981 | 350..760 | 100 | <- | Minus |
3R | 22486045..22486393 | 1..349 | 100 | Minus | |
3R | 22483785..22484137 | 1957..2309 | 100 | <- | Minus |
3R | 22484192..22484385 | 1763..1956 | 100 | <- | Minus |
3R | 22484442..22484626 | 1578..1762 | 100 | <- | Minus |
3R | 22484689..22485505 | 761..1577 | 100 | <- | Minus |
Translation from 38 to 2113
> LD38352.pep MESESSQDDWSAFDPMSREYYDQVGNRYTNESGQKLIMEAPLPPKDEKEQ RATRQAKYPYLVVPKSSPYVTEKMLINFFGRALIKEMEFRRLSRVYFVYF ENIASLETAQQRVQRYPNLIKCITGRPQKEREITSDPVTSTEPMPTPGPA ISATERTPVNHNREVPISTGGQNHPEFFRPPLVTKDDYKRGSLLATNDPI QRYLNVKYEFALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED KTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGK GEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY YTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMSRAMVLNVDNIKEIY VVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIRE VMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTP VEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTSIDLAY EVTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEGKWRRGLSVELVGDG YPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEKPTDEQI KWLDKNYPIGSVITCSEITFDEETNSYSTRIEKLQEFLSLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18289-PA | 444 | GF18289-PA | 101..436 | 305..640 | 1093 | 58.3 | Plus |
Dana\GF18289-PA | 444 | GF18289-PA | 2..116 | 5..127 | 198 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12487-PA | 689 | GG12487-PA | 2..689 | 4..691 | 3177 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18662-PA | 669 | GH18662-PA | 2..668 | 5..688 | 1779 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vret-PA | 691 | CG4771-PA | 1..691 | 1..691 | 3639 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24347-PA | 674 | GI24347-PA | 4..670 | 6..687 | 1784 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23777-PA | 675 | GL23777-PA | 6..675 | 8..689 | 1427 | 43.5 | Plus |
Dper\GL15862-PA | 522 | GL15862-PA | 2..522 | 174..688 | 1323 | 50 | Plus |
Dper\GL13262-PA | 108 | GL13262-PA | 1..108 | 581..689 | 331 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18420-PA | 703 | GA18420-PA | 6..703 | 8..689 | 1547 | 45.1 | Plus |
Dpse\GA23527-PA | 695 | GA23527-PA | 6..692 | 8..690 | 1501 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23618-PA | 691 | GM23618-PA | 1..691 | 1..691 | 3495 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18427-PA | 691 | GD18427-PA | 1..691 | 1..691 | 3462 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24358-PA | 677 | GJ24358-PA | 5..676 | 7..688 | 1792 | 51.2 | Plus |
Dvir\GJ24407-PA | 587 | GJ24407-PA | 167..568 | 308..670 | 240 | 21.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11625-PA | 706 | GK11625-PA | 9..705 | 8..688 | 1671 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24008-PA | 689 | GE24008-PA | 2..689 | 4..691 | 3180 | 84.4 | Plus |
Translation from 38 to 2113
> LD38352.hyp MESESSQDDWSAFDPMSREYYDQVGNRYTNESGQKLIMEAPLPPKDEKEQ RATRQAKYPYLVVPKSSPYVTEKMLINFFGRALIKEMEFRRLSRVYFVYF ENIASLETAQQRVQRYPNLIKCITGRPQKEREITSDPVTSTEPMPTPGPA ISATERTPVNHNREVPISTGGQNHPEFFRPPLVTKDDYKRGSLLATNDPI QRYLNVKYEFALERHDIYKLKDETRIPQVVLHFRSGRTIPLSTVAVTEED KTKSLLEDGVSKCVVCQNWTDTFCKLCKMPFCNASCFADVAEQHKQACGK GEILNLDEKVGRKYPKPGLPPSGSKVRITAFEQTNVVYVRSADIQIDIAY YTVLTEVMMLGKDASKLQSTPVCGQIVLYKFEGHMSRAMVLNVDNIKEIY VVFIDFGSVEVTQLERLYECSSYLAGLTCYPVAVKLRGVPRRFVGPNIRE VMYELDQSLVFNIKYSSREYDTSKGMQVVVMTEIDINRSLNRLFKTILTP VEPSVSDLGYKEDCLPYIPLHCGKNINVVVMDNTFIQCGFIYCTSIDLAY EVTKMQRDIQEYGEKIAKCATYAPPINELCIAKYEGKWRRGLSVELVGDG YPSILFIDYGNIVPTHVTDIRPYPPQFIFPIMTTQLDLIGVPEKPTDEQI KWLDKNYPIGSVITCSEITFDEETNSYSTRIEKLQEFLSLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vret-PA | 691 | CG4771-PA | 1..691 | 1..691 | 3639 | 100 | Plus |