Clone LD38433 Report

Search the DGRC for LD38433

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:384
Well:33
Vector:pOT2
Associated Gene/TranscriptCG5112-RA
Protein status:LD38433.pep: gold
Preliminary Size:1943
Sequenced Size:1798

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5112 2001-09-19 Blastp of sequenced clone
CG5112 2003-01-01 Sim4 clustering to Release 3
CG5112 2008-04-29 Release 5.5 accounting
CG5112 2008-08-15 Release 5.9 accounting
CG5112 2008-12-18 5.12 accounting

Clone Sequence Records

LD38433.complete Sequence

1798 bp (1798 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058674

> LD38433.complete
CTCGGTTTCAGTTTGCATATGCATTGCGCAAAGTGCAAATCTCATCAGAA
ATTGGAAGCGGCGTCATCATGTCATTTTGGAGCCACGTACTTGATGCCCT
GCTGGCACTGGTCCACATCCTGAGCGATCGCCTGCTGGAGTTCGTACTGG
ACTGGTATTTGGGCGAGCACAAGCGGGTATCGGGTCCACCGAGCCTGGAA
CAGCAGACGACGATTACGAAGAGCGCTGTGGAGTTGGCGCAACAGATACG
GGAACGCAGGCAGCGCAGTTACGACATAGTCAAGGCCTACTGTGAGCGAA
TCGAGAGCGTTAATCGGGATCTCAATGCGGTGGTCGATGGCCCGTTTCCG
GAGGCCTTGGACCAGGCACGCGAAATCGATCGCAAGTTGGACGAAAAGGA
GTACAGCGATGAGGATCTGCGGCGCCTGCCCTTCCTAGGCGTACCCTTCT
CCACCAAGGATAGCACCGCTGTGGCTGGGAGGCTACACACACTGGGCCTG
CTAGCAAGGAAATCGGAACGTTCGACCACGGATGCGGAATGCGTGCGCCT
GATGAAGGAAAGTGGCGCCATTATCATCGCCACCAGCAATGTGCCGGAGG
TGAACAAGTGGATTGAGTCGAGGAACATGCTAATCGGCTGCACCAACAAT
CCCTACGATCTGCGGCGTTCCGTCGGCGGTTCTTCGGGTGGTGAAGCCGC
TCTGATCGCTGCCTGCTGCACGGGTTTTGGTTTGGGAACAGACATTGGTG
GTTCCATACGCATACCGGCCTTCAATTGCGGCATCTTCGGGCACAAACCC
ACTTCCGGTGCGGTCAATATGGCCGGATGTACGTTCAGAACGGGCAAGGA
AAAGGATACGATGGTATGTGCCGGTCCAATGAGTCGTTCTGCGCGGGATC
TACTGCCCATGATGCAGGTTCTGGTGGAGCCATCGTTGAAAGCCAAGCTA
AAACTGGATCAGAAGGTGGATCTGAAGCGGCTGCGTTACTTCTATGTGTC
CTCCAATGGCATGGCTCAGTGCAATCCTATTAACCGGGAAACCGAACGGG
TTATGTACAAGATTCGCAAACATTTCGAGGCAGTGAGTGGAAAGGACGTG
CGGCACGCTGACTTGCCCTATACCAAGCTGACCGGAAAGATGTGGCGCTA
TTGGATGACCCAGGAACCGGCCAACTTCAATCTGCTGTTGGGCAATGGCG
CCGAGCTCAATCCATTTGTGGAGCTCTTCAAGAAGATACTGGGGCAAAGT
GACTACAGCATGGCGGCCATTTATGGTCTGATCGACAGTGTGCTGCCCAA
GGAAAAGGAGAAGCTGATGAGGGAAGCCACGGCCAAGTGCAAGAAGTCCG
TCCAGGACTTGCTCGGCGACGATGGTGTGCTGTTCTTTCACAGTTCTCCC
AGGACTGCACCATTCCACTACTATCCTCTGGTCAAGTTCAATGACTTCGC
GTACTTCAGCCTCTTCAATGTGCTCCACTTGCCGGCCACCCAGGTGCCCA
TGGGTCTGGACTCCAAGGGCATGCCGCTGGGCATCCAAGTGGTGGCCAAT
CCGAACAACGATCGCCTTTGCCTGGCGGTTGCCGAGGAACTGGAGCGCAC
TTTTGGCGGCTGGGTGCCTCCATTTCCGCTGAAGAACTAGATGGTTTATG
ATGTATGATCGATCAACTTATTGTTAGAGAACATAGGGTGTGGGTAACGC
TGAAGACTGTCGCTTTTATTTATTACTTTTATTACAGGATATAAATAAAT
TGGCTATCTTTTTTAACTGCTTGAAAAAAAAAAAAAAAAAAAAAAAAA

LD38433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5112-RA 1774 CG5112-RA 1..1774 1..1774 8870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21314617..21316389 1..1773 8850 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25491490..25493263 1..1774 8870 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25232321..25234094 1..1774 8870 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:28:37 has no hits.

LD38433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:29:29 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21314617..21316389 1..1773 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:42 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1572 69..1640 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:08 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1572 69..1640 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:36 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1572 69..1640 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:32 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1572 69..1640 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:34:44 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1572 69..1640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:28 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1773 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:08 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1773 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:36 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 31..1803 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:32 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 1..1773 1..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:34:44 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
CG5112-RA 31..1803 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:29 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25491490..25493262 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:29 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25491490..25493262 1..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:29 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25491490..25493262 1..1773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:36 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21317212..21318984 1..1773 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:58 Download gff for LD38433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25232321..25234093 1..1773 100   Plus

LD38433.hyp Sequence

Translation from 2 to 1639

> LD38433.hyp
RFQFAYALRKVQISSEIGSGVIMSFWSHVLDALLALVHILSDRLLEFVLD
WYLGEHKRVSGPPSLEQQTTITKSAVELAQQIRERRQRSYDIVKAYCERI
ESVNRDLNAVVDGPFPEALDQAREIDRKLDEKEYSDEDLRRLPFLGVPFS
TKDSTAVAGRLHTLGLLARKSERSTTDAECVRLMKESGAIIIATSNVPEV
NKWIESRNMLIGCTNNPYDLRRSVGGSSGGEAALIAACCTGFGLGTDIGG
SIRIPAFNCGIFGHKPTSGAVNMAGCTFRTGKEKDTMVCAGPMSRSARDL
LPMMQVLVEPSLKAKLKLDQKVDLKRLRYFYVSSNGMAQCNPINRETERV
MYKIRKHFEAVSGKDVRHADLPYTKLTGKMWRYWMTQEPANFNLLLGNGA
ELNPFVELFKKILGQSDYSMAAIYGLIDSVLPKEKEKLMREATAKCKKSV
QDLLGDDGVLFFHSSPRTAPFHYYPLVKFNDFAYFSLFNVLHLPATQVPM
GLDSKGMPLGIQVVANPNNDRLCLAVAEELERTFGGWVPPFPLKN*

LD38433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5112-PA 523 CG5112-PA 1..523 23..545 2733 100 Plus
CG8839-PE 529 CG8839-PE 23..525 45..540 873 40.2 Plus
CG8839-PA 529 CG8839-PA 23..525 45..540 873 40.2 Plus
CG8839-PC 529 CG8839-PC 23..525 45..540 873 40.2 Plus
CG8839-PD 529 CG8839-PD 23..525 45..540 873 40.2 Plus

LD38433.pep Sequence

Translation from 68 to 1639

> LD38433.pep
MSFWSHVLDALLALVHILSDRLLEFVLDWYLGEHKRVSGPPSLEQQTTIT
KSAVELAQQIRERRQRSYDIVKAYCERIESVNRDLNAVVDGPFPEALDQA
REIDRKLDEKEYSDEDLRRLPFLGVPFSTKDSTAVAGRLHTLGLLARKSE
RSTTDAECVRLMKESGAIIIATSNVPEVNKWIESRNMLIGCTNNPYDLRR
SVGGSSGGEAALIAACCTGFGLGTDIGGSIRIPAFNCGIFGHKPTSGAVN
MAGCTFRTGKEKDTMVCAGPMSRSARDLLPMMQVLVEPSLKAKLKLDQKV
DLKRLRYFYVSSNGMAQCNPINRETERVMYKIRKHFEAVSGKDVRHADLP
YTKLTGKMWRYWMTQEPANFNLLLGNGAELNPFVELFKKILGQSDYSMAA
IYGLIDSVLPKEKEKLMREATAKCKKSVQDLLGDDGVLFFHSSPRTAPFH
YYPLVKFNDFAYFSLFNVLHLPATQVPMGLDSKGMPLGIQVVANPNNDRL
CLAVAEELERTFGGWVPPFPLKN*

LD38433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17696-PA 523 GF17696-PA 1..523 1..523 2487 88.7 Plus
Dana\GF12071-PA 531 GF12071-PA 48..527 49..518 871 40.1 Plus
Dana\GF16679-PA 528 GF16679-PA 10..512 25..518 708 35 Plus
Dana\GF16723-PA 542 GF16723-PA 5..529 8..520 689 35.4 Plus
Dana\GF16973-PA 534 GF16973-PA 5..527 1..520 674 34 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11409-PA 523 GG11409-PA 1..523 1..523 2658 93.3 Plus
Dere\GG22587-PA 529 GG22587-PA 1..525 1..518 869 38.7 Plus
Dere\GG23956-PA 528 GG23956-PA 10..512 25..518 717 35.4 Plus
Dere\GG23111-PA 536 GG23111-PA 1..531 1..520 692 35.9 Plus
Dere\GG23077-PA 530 GG23077-PA 1..527 1..520 666 33.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18979-PA 523 GH18979-PA 1..523 1..523 2189 75.7 Plus
Dgri\GH22975-PA 535 GH22975-PA 53..531 49..518 880 40.7 Plus
Dgri\GH14157-PA 528 GH14157-PA 10..512 25..518 704 35 Plus
Dgri\GH18322-PA 535 GH18322-PA 7..531 11..521 679 32.9 Plus
Dgri\GH18321-PA 536 GH18321-PA 15..527 15..520 657 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5112-PA 523 CG5112-PA 1..523 1..523 2733 100 Plus
CG8839-PE 529 CG8839-PE 23..525 23..518 873 40.2 Plus
CG8839-PA 529 CG8839-PA 23..525 23..518 873 40.2 Plus
CG8839-PC 529 CG8839-PC 23..525 23..518 873 40.2 Plus
CG8839-PD 529 CG8839-PD 23..525 23..518 873 40.2 Plus
CG7900-PB 536 CG7900-PB 1..531 1..520 710 34.1 Plus
CG5191-PB 552 CG5191-PB 12..536 6..518 689 34 Plus
CG5191-PF 528 CG5191-PF 11..512 26..518 687 34.7 Plus
CG5191-PC 528 CG5191-PC 11..512 26..518 687 34.7 Plus
CG5191-PE 528 CG5191-PE 11..512 26..518 687 34.7 Plus
CG7910-PB 530 CG7910-PB 7..527 7..520 653 33.8 Plus
CG7910-PA 530 CG7910-PA 7..527 7..520 653 33.8 Plus
CG5191-PD 429 CG5191-PD 14..413 121..518 567 35.1 Plus
CG5191-PA 429 CG5191-PA 14..413 121..518 567 35.1 Plus
GatA-PA 508 CG6007-PA 38..490 83..509 207 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22405-PA 525 GI22405-PA 1..524 1..523 2144 76.7 Plus
Dmoj\GI18460-PA 534 GI18460-PA 52..530 49..518 865 40.9 Plus
Dmoj\GI22238-PA 528 GI22238-PA 10..512 25..518 706 35.2 Plus
Dmoj\GI23303-PA 534 GI23303-PA 28..526 29..515 655 36.8 Plus
Dmoj\GI23302-PA 540 GI23302-PA 20..525 20..518 628 33.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22143-PA 525 GL22143-PA 1..525 1..523 2381 84.6 Plus
Dper\GL11255-PA 528 GL11255-PA 46..524 49..518 888 41 Plus
Dper\GL23753-PA 533 GL23753-PA 6..527 21..520 678 33.8 Plus
Dper\GL13563-PA 530 GL13563-PA 10..495 25..518 648 33.5 Plus
Dper\GL23754-PA 402 GL23754-PA 109..397 244..520 316 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18668-PA 525 GA18668-PA 1..525 1..523 2383 84.6 Plus
Dpse\GA21360-PA 528 GA21360-PA 46..524 49..518 888 41 Plus
Dpse\GA20671-PA 533 GA20671-PA 4..528 3..520 693 35 Plus
Dpse\GA20678-PA 533 GA20678-PA 6..527 21..520 680 33.8 Plus
Dpse\GA18724-PB 488 GA18724-PB 2..457 66..518 671 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10248-PA 523 GM10248-PA 1..523 1..523 2754 97.7 Plus
Dsec\GM20367-PA 529 GM20367-PA 23..525 23..518 873 40 Plus
Dsec\GM23118-PA 528 GM23118-PA 10..512 25..518 709 35.5 Plus
Dsec\GM23702-PA 536 GM23702-PA 1..531 1..520 699 34.9 Plus
Dsec\GM23701-PA 530 GM23701-PA 1..527 1..520 661 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21221-PA 523 GD21221-PA 1..523 1..523 2755 97.7 Plus
Dsim\GD25848-PA 529 GD25848-PA 23..525 23..518 878 40.2 Plus
Dsim\GD18512-PA 536 GD18512-PA 1..531 1..520 698 35.2 Plus
Dsim\GD19357-PA 522 GD19357-PA 10..506 25..518 680 34.8 Plus
Dsim\GD18511-PA 530 GD18511-PA 1..527 1..520 664 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10965-PA 524 GJ10965-PA 1..523 1..522 2264 78.4 Plus
Dvir\GJ21547-PA 534 GJ21547-PA 52..530 49..518 842 39.7 Plus
Dvir\GJ23043-PA 528 GJ23043-PA 10..512 25..518 707 35.2 Plus
Dvir\GJ24159-PA 530 GJ24159-PA 22..524 23..518 668 34 Plus
Dvir\GJ24158-PA 536 GJ24158-PA 1..525 1..518 655 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12847-PA 523 GK12847-PA 1..523 1..523 2224 76.9 Plus
Dwil\GK22129-PA 525 GK22129-PA 42..520 49..518 902 41.8 Plus
Dwil\GK22453-PA 533 GK22453-PA 10..512 25..518 703 34.8 Plus
Dwil\GK14375-PA 534 GK14375-PA 42..527 49..520 687 34.3 Plus
Dwil\GK14376-PA 533 GK14376-PA 33..528 36..520 664 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23605-PA 523 GE23605-PA 1..523 1..523 2712 95.8 Plus
Dyak\GE13457-PA 529 GE13457-PA 1..525 1..518 860 38.5 Plus
Dyak\GE25669-PA 528 GE25669-PA 10..512 25..518 707 35.2 Plus
Dyak\GE25848-PA 536 GE25848-PA 1..531 1..520 682 35.7 Plus
Dyak\GE25847-PA 530 GE25847-PA 1..527 1..520 669 33.5 Plus