Clone LD38503 Report

Search the DGRC for LD38503

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:385
Well:3
Vector:pOT2
Associated Gene/TranscriptCG4942-RA
Protein status:LD38503.pep: gold
Preliminary Size:1436
Sequenced Size:1351

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4942 2001-01-01 Release 2 assignment
CG4942 2001-11-09 Blastp of sequenced clone
CG4942 2003-01-01 Sim4 clustering to Release 3
CG4942 2008-04-29 Release 5.5 accounting
CG4942 2008-08-15 Release 5.9 accounting
CG4942 2008-12-18 5.12 accounting

Clone Sequence Records

LD38503.complete Sequence

1351 bp (1351 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069618

> LD38503.complete
CTGTTCACAATGATAACAACTCGCACTGCTGATTCTATATAGTTGTTTAC
GTTGATTATTAGTTTTATATTAATTAAAAATGTCAGCTTTGCTTCTTTTA
CGCACCTGTAGAAGTTCATCAATTGCTGGCATCTACAAATACACATACCA
AGGAACAACTATTGCGAATCACACATGCAATCATCGTCTGTCGTCTACAG
AAGCGGCGGCCGCGAGTGTCCAACTGGCAAATGCCGGTGGATTGGTGGGA
TATTGGCAGACCTTGTCCAACAGCACGCCGGTGGCCTATATGCAGGATGT
TCTCATTAAGATCCACGACTACAGTGGCCTGCCCTGGTGGGCGTCCATCG
TGCTGTCCACTTTCCTTTTTCGGAGCGTGGTCACCCTGCCTCTGACCATT
TACCAGCACAAAATCACCGCCAGAATTGAAAAGATAGCGCTGGAGATGCC
GGCCATTGTGGAGGAACTGAAAAAAGAGGCAGCCATGGCCAAGCACAAGT
TCAAGTGGAGCGAAAAGCAGACTCAGATTGTTTATCGGCGTTCGATCAAG
AAGCAGTGGCAGAACCTTATAGTTCGGGATAACTGCCATCCCATGAAGAC
CATGATTGTGCTATGGGGTCAGATTCCCCTGTGGATCTTTCAATCCGTGG
CTCTGCGCAATTTAGTGTACATGCTGCCGGATCCCACGTCCATTCAAGCT
CAAATCGTGACCACCGAAATGACCATTGGCGGATTTGGTTGGATACCAAA
CCTTACGGTGGTGGATAACTCTTATATCCTGCCTGTAGCATTAGGTCTTA
TCAATTTGGCCATCATTGAAGTGCAAGCCATGTCTAGAACTCGTCCTTCT
ACACGCTTGCAGAACATCGCCAACAATGTGTTCCGTGGATTGAGTGTTGT
GATGGTTCCAGTAGCCTGTACAGTGCCTTCAGCTTTATGTGTATACTGGG
TAGCTTCCAGCAGTTTTGGCCTTGCTCAAAATCTGCTCATCCTCTCGCCG
GAAGTGCGACGATCTGTGGGAATTCCCAAAACACAAACGGAACTCAGTGA
GCCGTACGATCTGCTCTGGCTAAAAATACAGCAGAGGCTAAGACTTGCCG
AGAGGGCGCCGGCTGATAAGCCGGCAGCCAAATGATCTAGTCTCTTAGTC
ATAATCACCTAGTCTAATTTGGGTATGACGTTTAGTTTGTTTAAATGCGA
CTGCGCCACTGTAATTCATCATCATCATTCTTAAGCTCCAACATCTCAGA
TTCATAGAAGTAAATAAATGAGTGAAAAACCCCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

LD38503.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-RA 1429 CG4942-RA 27..1317 1..1291 6440 99.9 Plus
CG4942.a 1289 CG4942.a 70..1274 87..1291 6010 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9065650..9066389 544..1283 3670 99.7 Plus
chr3L 24539361 chr3L 9065050..9065593 1..544 2705 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9073728..9074475 544..1291 3725 99.9 Plus
3L 28110227 3L 9073128..9073671 1..544 2720 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9066828..9067575 544..1291 3725 99.8 Plus
3L 28103327 3L 9066228..9066771 1..544 2720 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:29:15 has no hits.

LD38503.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:11 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9065050..9065593 1..544 99 -> Plus
chr3L 9065651..9066389 545..1283 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:47 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 80..1135 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:39 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 80..1135 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:52 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 80..1135 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:17 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 80..1135 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:39 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1056 80..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:27 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1283 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:38 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1283 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:52 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 24..1306 1..1283 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:18 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 1..1283 1..1283 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:39 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
CG4942-RA 24..1306 1..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:11 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9073128..9073671 1..544 100 -> Plus
3L 9073729..9074467 545..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:11 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9073128..9073671 1..544 100 -> Plus
3L 9073729..9074467 545..1283 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:11 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9073128..9073671 1..544 100 -> Plus
3L 9073729..9074467 545..1283 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:52 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9066228..9066771 1..544 100 -> Plus
arm_3L 9066829..9067567 545..1283 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:57 Download gff for LD38503.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9066228..9066771 1..544 100 -> Plus
3L 9066829..9067567 545..1283 100   Plus

LD38503.pep Sequence

Translation from 79 to 1134

> LD38503.pep
MSALLLLRTCRSSSIAGIYKYTYQGTTIANHTCNHRLSSTEAAAASVQLA
NAGGLVGYWQTLSNSTPVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSV
VTLPLTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQI
VYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLP
DPTSIQAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQA
MSRTRPSTRLQNIANNVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQ
NLLILSPEVRRSVGIPKTQTELSEPYDLLWLKIQQRLRLAERAPADKPAA
K*

LD38503.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10853-PA 352 GF10853-PA 1..352 1..351 1505 81 Plus
Dana\GF23816-PA 448 GF23816-PA 110..370 38..321 208 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14371-PA 351 GG14371-PA 1..351 1..351 1738 94.3 Plus
Dere\GG13956-PA 441 GG13956-PA 117..363 43..321 199 26.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15574-PA 352 GH15574-PA 3..352 5..351 1405 77.7 Plus
Dgri\GH23226-PA 449 GH23226-PA 81..365 7..317 213 27.7 Plus
Dgri\GH17044-PA 457 GH17044-PA 81..365 7..317 212 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-PA 351 CG4942-PA 1..351 1..351 1798 100 Plus
CG6404-PA 441 CG6404-PA 128..362 62..320 205 26.5 Plus
CG6404-PB 441 CG6404-PB 128..362 62..320 205 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16849-PA 322 GI16849-PA 4..322 36..351 1412 83.1 Plus
Dmoj\GI12049-PA 423 GI12049-PA 101..328 66..317 196 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15036-PA 350 GL15036-PA 1..350 1..351 1528 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18542-PA 350 GA18542-PA 1..350 1..351 1531 80.6 Plus
Dpse\GA19566-PA 438 GA19566-PA 115..361 43..321 211 27.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25116-PA 351 GM25116-PA 1..351 1..351 1781 95.4 Plus
Dsec\GM24796-PA 441 GM24796-PA 117..399 43..341 196 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14151-PA 1009 GD14151-PA 1..219 1..219 1142 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12599-PA 349 GJ12599-PA 3..349 5..351 1443 79.3 Plus
Dvir\GJ13319-PA 447 GJ13319-PA 138..369 66..321 193 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16110-PA 362 GK16110-PA 39..361 34..351 1421 81.1 Plus
Dwil\GK18022-PA 469 GK18022-PA 107..366 37..321 202 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20802-PA 351 GE20802-PA 1..351 1..351 1751 94.6 Plus
Dyak\GE20254-PA 441 GE20254-PA 117..399 43..341 198 25.6 Plus

LD38503.hyp Sequence

Translation from 79 to 1134

> LD38503.hyp
MSALLLLRTCRSSSIAGIYKYTYQGTTIANHTCNHRLSSTEAAAASVQLA
NAGGLVGYWQTLSNSTPVAYMQDVLIKIHDYSGLPWWASIVLSTFLFRSV
VTLPLTIYQHKITARIEKIALEMPAIVEELKKEAAMAKHKFKWSEKQTQI
VYRRSIKKQWQNLIVRDNCHPMKTMIVLWGQIPLWIFQSVALRNLVYMLP
DPTSIQAQIVTTEMTIGGFGWIPNLTVVDNSYILPVALGLINLAIIEVQA
MSRTRPSTRLQNIANNVFRGLSVVMVPVACTVPSALCVYWVASSSFGLAQ
NLLILSPEVRRSVGIPKTQTELSEPYDLLWLKIQQRLRLAERAPADKPAA
K*

LD38503.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4942-PA 351 CG4942-PA 1..351 1..351 1798 100 Plus
CG6404-PA 441 CG6404-PA 128..362 62..320 205 26.5 Plus
CG6404-PB 441 CG6404-PB 128..362 62..320 205 26.5 Plus