BDGP Sequence Production Resources |
Search the DGRC for LD38554
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 385 |
Well: | 54 |
Vector: | pOT2 |
Associated Gene/Transcript | CG8180-RA |
Protein status: | LD38554.pep: gold |
Preliminary Size: | 2279 |
Sequenced Size: | 2269 |
Gene | Date | Evidence |
---|---|---|
CG8180 | 2001-01-01 | Release 2 assignment |
CG8180 | 2001-09-19 | Blastp of sequenced clone |
CG8180 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8180 | 2008-04-29 | Release 5.5 accounting |
CG8180 | 2008-08-15 | Release 5.9 accounting |
CG8180 | 2008-12-18 | 5.12 accounting |
2269 bp (2269 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058676
> LD38554.complete TCGCAGCAGGTTCGCGAGTTCGAGCAGCGGCGCAAAGCGAGACAAAAGAG CAGCGTTCCAAGTCTTCGGCCCCCAGTCGCTGAAGCCGAGGGCGGCGCAG AAAACTTGGCTCCTTGTTTTTCAAGAAACCCCAAAAAAAGGGCGCGCGAG TGAGATTCCGCTATAAACGGATTCCGCTATCTTGATCCTAAGCGAACTAG TTTTAGATTGCGCAATTTCAATCGACAATATCGCAAAAAGCAACTGTTTA AGTGCCCGCCGCCGAGTGAAATTGGATAGTAAAGGCAAAACGCAAAGCCA AACGACGATCGGCGGCTCTGAGAAGCCGTTTTAAAACACAAATACGAAAA AATATACTGAAAAACTGCTATAAACAACAAAAACAACAGAGCAACATGGC GACCGCCGCCTGCGTCCGCTGCGCCCAACAACAACAACAGAAGCAACAAC AACATGCGGCGCATGCGCAGCAGCAGCAGCGACGCAACAGCCCGCGGATT CTGCACATTTACTGCGCGTGGGCGTTGATCACTCTGTTGGCCGCCAGTGC CGCCATGGTCCAAAGTGCAGCGGTATTCGGCGATCTGCTGTCCCATCCCA CTTTCAAGCCACTATGCAGCGCTCAGCACGAGCATTTCATCGAGAGCGAT GGCAAAGAATCTAGTCTCATCATCGAACTGAAGCCGGGACTCTATGGGGC GGAGCACGCCTCCTGTTCCCGCATCCTGAGTGCCCCGCCCAACTATGGAT TCATAGTGCGCCTCATCCTGCCAAAGCTGCCGCACGGTCAGCCGTTGGAT GCGGCCACCACCAGAAGTCCCCCCACGAACATCATGGCTGCCGCAGCCGG AGGCAACAACTCGTCCAAACTCCGGCGCACTGGCAAGTCCGGCGAAATGA CAACTGACTCCTCGGAGCCACTCAACACGACGAGGGCCATCGTCTCATCG GCGCCTACGCGGTTGTTGGGACGCACCTGCCCTCTGAACATATTTAGCTC GCTCGATCCGCACACGGCACAGTGGCGAGTGGATCCCTGCCAGCTGGAGG ACACTGCCTCCGAGATGGAGGATCCGGTGCGGCTCTTTCATGGCCGCGTC AAGATCGTCTGGGAACATGGCCAGCACGCCCTCCGATCCAAACTGATGGT CACGGTGCTGGGCAAGGGCGAGCAGTGCAAGGATGGCAGCAAGCACCAGT GCTTGAAGATCGGTGATGAGCCCATTCTGTGCATCTCCAAGGAGCTGTCT TGCGACGGGATCCGCCATTGTCCGTACAGCAACGAGTACGACAGCGATGA GGACTACGAGCTGTGCTCGAAGCAGCGTCGCCCGGGAGCCGGTAAGCTGG CCGCCGGCCTGGAGTCGGATCTATTCGAGCAGTTTGCCCTGGAAGTGTTT CGCAATCTGTTCGCCAACGATGCTCCAACGGCACCGGAGGATCTGCCTCG CAACGGGAGCGATGGAGGCGAAGGTTTGGGCAATTCAACGGCCACCTCGA CGACCACGCTGCGCAAAGTGCAAACCAAAGATATGAAGAAAGCCGGTGGC GATGGGTCACCGATCTCAATTGACCCCAAACTGCTCACGGAAGGGGATCA GCAGAGGCCGGATAACGATACGACTGAAATGGGAGTGGGCACTGGAGCTG GCAGCGGCTTCACCCGCAGGAACTCAACGCGCTCCGGTCTGCACTCGGAC CTATCGAAGTACGGCCCGTGGGGCTACCTGATGCTCGGCATGCTCCTGTG CGGTGGGGCACTGCTCATCTGCGGCCTTTGGGCCTCCGCATCGCAGCATG CGGTCAACAACGAGCGGGAGGCGGCGCTGGCCGCTGCCAATGGAGGAGGA AATGGTGGCGGGGACCACCTGGGAGCCACCTCGCCGCCCAACTATGAAGA GCTGGATCCGCCGCCGGCCTACTCGGTGCTCTTTCCCAACCAAAAGGCCG CCAGTAGCACCACACTGAACCTGGATGCCACGGCGGCCAGCACAACAGCA GCTGCTGCAGCAGCGGCGGCCGCAGCAGCAACAGCCGCAGCAGCCACTGC AGCAGCAACTGCGCTGGCAGGAGCAACACCCAGCGATTCCGCGCAGCAAC ATCAGCAACAGGAACAGCCAACGAACTAGCCCGTAAGCCTGACAAGAAGG TGTCGCACCTGGAAAACGTAGATCTTAAGGTCCCAACATCTCTCTGACTG ACTCTGATGCAATTAGCTTTTAACCAATTTAGTGATAGTTTTAAGTGTGA CAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 11369377..11369956 | 580..1 | 2900 | 100 | Minus |
chr2R | 21145070 | chr2R | 11360323..11360892 | 1782..1213 | 2790 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 11359611..11360080 | 2251..1782 | 2335 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 11363084..11363494 | 992..582 | 2025 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 11361031..11361251 | 1213..993 | 1105 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 15482233..15482812 | 580..1 | 2900 | 100 | Minus |
2R | 25286936 | 2R | 15473177..15473746 | 1782..1213 | 2850 | 100 | Minus |
2R | 25286936 | 2R | 15472465..15472934 | 2251..1782 | 2350 | 100 | Minus |
2R | 25286936 | 2R | 15475941..15476354 | 992..579 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15473885..15474105 | 1213..993 | 1105 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 15483432..15484011 | 580..1 | 2900 | 100 | Minus |
2R | 25260384 | 2R | 15474376..15474945 | 1782..1213 | 2850 | 100 | Minus |
2R | 25260384 | 2R | 15473664..15474133 | 2251..1782 | 2350 | 100 | Minus |
2R | 25260384 | 2R | 15477140..15477553 | 992..579 | 2070 | 100 | Minus |
2R | 25260384 | 2R | 15475084..15475304 | 1213..993 | 1105 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11359611..11359804 | 2058..2251 | 99 | == | Minus |
chr2R | 11359875..11360079 | 1783..1987 | 100 | <- | Minus |
chr2R | 11360323..11360891 | 1214..1782 | 99 | <- | Minus |
chr2R | 11361031..11361251 | 993..1213 | 100 | <- | Minus |
chr2R | 11363084..11363496 | 580..992 | 99 | <- | Minus |
chr2R | 11369378..11369956 | 1..579 | 94 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 1..1734 | 396..2129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 1..1734 | 396..2129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 1..1734 | 396..2129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 1..1734 | 396..2129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 1..1734 | 396..2129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 22..2272 | 1..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 22..2272 | 1..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 23..2273 | 1..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 22..2272 | 1..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8180-RA | 23..2273 | 1..2251 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15472465..15472933 | 1783..2251 | 100 | <- | Minus |
2R | 15473177..15473745 | 1214..1782 | 100 | <- | Minus |
2R | 15473885..15474105 | 993..1213 | 100 | <- | Minus |
2R | 15475941..15476353 | 580..992 | 100 | <- | Minus |
2R | 15482234..15482812 | 1..579 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15472465..15472933 | 1783..2251 | 100 | <- | Minus |
2R | 15473177..15473745 | 1214..1782 | 100 | <- | Minus |
2R | 15473885..15474105 | 993..1213 | 100 | <- | Minus |
2R | 15475941..15476353 | 580..992 | 100 | <- | Minus |
2R | 15482234..15482812 | 1..579 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15472465..15472933 | 1783..2251 | 100 | <- | Minus |
2R | 15473177..15473745 | 1214..1782 | 100 | <- | Minus |
2R | 15473885..15474105 | 993..1213 | 100 | <- | Minus |
2R | 15475941..15476353 | 580..992 | 100 | <- | Minus |
2R | 15482234..15482812 | 1..579 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11359970..11360438 | 1783..2251 | 100 | <- | Minus |
arm_2R | 11360682..11361250 | 1214..1782 | 100 | <- | Minus |
arm_2R | 11361390..11361610 | 993..1213 | 100 | <- | Minus |
arm_2R | 11363446..11363858 | 580..992 | 100 | <- | Minus |
arm_2R | 11369739..11370317 | 1..579 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15473664..15474132 | 1783..2251 | 100 | <- | Minus |
2R | 15474376..15474944 | 1214..1782 | 100 | <- | Minus |
2R | 15475084..15475304 | 993..1213 | 100 | <- | Minus |
2R | 15477140..15477552 | 580..992 | 100 | <- | Minus |
2R | 15483433..15484011 | 1..579 | 100 | Minus |
Translation from 395 to 2128
> LD38554.pep MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA TAAATALAGATPSDSAQQHQQQEQPTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11867-PA | 580 | GF11867-PA | 2..580 | 4..577 | 2088 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22352-PA | 576 | GG22352-PA | 1..527 | 1..527 | 2449 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21649-PA | 623 | GH21649-PA | 1..546 | 1..525 | 1836 | 69.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8180-PC | 577 | CG8180-PC | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PA | 577 | CG8180-PA | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PB | 594 | CG8180-PB | 1..594 | 1..577 | 2985 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20101-PA | 616 | GI20101-PA | 17..541 | 6..525 | 1772 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20040-PA | 573 | GL20040-PA | 20..554 | 32..564 | 1864 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20873-PA | 563 | GA20873-PA | 20..509 | 32..528 | 1857 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20138-PA | 584 | GM20138-PA | 1..584 | 1..577 | 2562 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25616-PA | 577 | GD25616-PA | 1..577 | 1..577 | 2961 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19870-PA | 594 | GJ19870-PA | 22..533 | 6..525 | 1723 | 73.1 | Plus |
Dvir\GJ15452-PA | 305 | GJ15452-PA | 1..244 | 283..525 | 839 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23206-PA | 588 | GK23206-PA | 41..544 | 36..527 | 1755 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14152-PA | 587 | GE14152-PA | 1..575 | 1..566 | 2422 | 88.7 | Plus |
Translation from 395 to 2128
> LD38554.hyp MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA TAAATALAGATPSDSAQQHQQQEQPTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8180-PC | 577 | CG8180-PC | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PA | 577 | CG8180-PA | 1..577 | 1..577 | 3013 | 100 | Plus |
CG8180-PB | 594 | CG8180-PB | 1..594 | 1..577 | 2985 | 97.1 | Plus |