Clone LD38554 Report

Search the DGRC for LD38554

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:385
Well:54
Vector:pOT2
Associated Gene/TranscriptCG8180-RA
Protein status:LD38554.pep: gold
Preliminary Size:2279
Sequenced Size:2269

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8180 2001-01-01 Release 2 assignment
CG8180 2001-09-19 Blastp of sequenced clone
CG8180 2003-01-01 Sim4 clustering to Release 3
CG8180 2008-04-29 Release 5.5 accounting
CG8180 2008-08-15 Release 5.9 accounting
CG8180 2008-12-18 5.12 accounting

Clone Sequence Records

LD38554.complete Sequence

2269 bp (2269 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058676

> LD38554.complete
TCGCAGCAGGTTCGCGAGTTCGAGCAGCGGCGCAAAGCGAGACAAAAGAG
CAGCGTTCCAAGTCTTCGGCCCCCAGTCGCTGAAGCCGAGGGCGGCGCAG
AAAACTTGGCTCCTTGTTTTTCAAGAAACCCCAAAAAAAGGGCGCGCGAG
TGAGATTCCGCTATAAACGGATTCCGCTATCTTGATCCTAAGCGAACTAG
TTTTAGATTGCGCAATTTCAATCGACAATATCGCAAAAAGCAACTGTTTA
AGTGCCCGCCGCCGAGTGAAATTGGATAGTAAAGGCAAAACGCAAAGCCA
AACGACGATCGGCGGCTCTGAGAAGCCGTTTTAAAACACAAATACGAAAA
AATATACTGAAAAACTGCTATAAACAACAAAAACAACAGAGCAACATGGC
GACCGCCGCCTGCGTCCGCTGCGCCCAACAACAACAACAGAAGCAACAAC
AACATGCGGCGCATGCGCAGCAGCAGCAGCGACGCAACAGCCCGCGGATT
CTGCACATTTACTGCGCGTGGGCGTTGATCACTCTGTTGGCCGCCAGTGC
CGCCATGGTCCAAAGTGCAGCGGTATTCGGCGATCTGCTGTCCCATCCCA
CTTTCAAGCCACTATGCAGCGCTCAGCACGAGCATTTCATCGAGAGCGAT
GGCAAAGAATCTAGTCTCATCATCGAACTGAAGCCGGGACTCTATGGGGC
GGAGCACGCCTCCTGTTCCCGCATCCTGAGTGCCCCGCCCAACTATGGAT
TCATAGTGCGCCTCATCCTGCCAAAGCTGCCGCACGGTCAGCCGTTGGAT
GCGGCCACCACCAGAAGTCCCCCCACGAACATCATGGCTGCCGCAGCCGG
AGGCAACAACTCGTCCAAACTCCGGCGCACTGGCAAGTCCGGCGAAATGA
CAACTGACTCCTCGGAGCCACTCAACACGACGAGGGCCATCGTCTCATCG
GCGCCTACGCGGTTGTTGGGACGCACCTGCCCTCTGAACATATTTAGCTC
GCTCGATCCGCACACGGCACAGTGGCGAGTGGATCCCTGCCAGCTGGAGG
ACACTGCCTCCGAGATGGAGGATCCGGTGCGGCTCTTTCATGGCCGCGTC
AAGATCGTCTGGGAACATGGCCAGCACGCCCTCCGATCCAAACTGATGGT
CACGGTGCTGGGCAAGGGCGAGCAGTGCAAGGATGGCAGCAAGCACCAGT
GCTTGAAGATCGGTGATGAGCCCATTCTGTGCATCTCCAAGGAGCTGTCT
TGCGACGGGATCCGCCATTGTCCGTACAGCAACGAGTACGACAGCGATGA
GGACTACGAGCTGTGCTCGAAGCAGCGTCGCCCGGGAGCCGGTAAGCTGG
CCGCCGGCCTGGAGTCGGATCTATTCGAGCAGTTTGCCCTGGAAGTGTTT
CGCAATCTGTTCGCCAACGATGCTCCAACGGCACCGGAGGATCTGCCTCG
CAACGGGAGCGATGGAGGCGAAGGTTTGGGCAATTCAACGGCCACCTCGA
CGACCACGCTGCGCAAAGTGCAAACCAAAGATATGAAGAAAGCCGGTGGC
GATGGGTCACCGATCTCAATTGACCCCAAACTGCTCACGGAAGGGGATCA
GCAGAGGCCGGATAACGATACGACTGAAATGGGAGTGGGCACTGGAGCTG
GCAGCGGCTTCACCCGCAGGAACTCAACGCGCTCCGGTCTGCACTCGGAC
CTATCGAAGTACGGCCCGTGGGGCTACCTGATGCTCGGCATGCTCCTGTG
CGGTGGGGCACTGCTCATCTGCGGCCTTTGGGCCTCCGCATCGCAGCATG
CGGTCAACAACGAGCGGGAGGCGGCGCTGGCCGCTGCCAATGGAGGAGGA
AATGGTGGCGGGGACCACCTGGGAGCCACCTCGCCGCCCAACTATGAAGA
GCTGGATCCGCCGCCGGCCTACTCGGTGCTCTTTCCCAACCAAAAGGCCG
CCAGTAGCACCACACTGAACCTGGATGCCACGGCGGCCAGCACAACAGCA
GCTGCTGCAGCAGCGGCGGCCGCAGCAGCAACAGCCGCAGCAGCCACTGC
AGCAGCAACTGCGCTGGCAGGAGCAACACCCAGCGATTCCGCGCAGCAAC
ATCAGCAACAGGAACAGCCAACGAACTAGCCCGTAAGCCTGACAAGAAGG
TGTCGCACCTGGAAAACGTAGATCTTAAGGTCCCAACATCTCTCTGACTG
ACTCTGATGCAATTAGCTTTTAACCAATTTAGTGATAGTTTTAAGTGTGA
CAAAAAAAAAAAAAAAAAA

LD38554.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-RA 2312 CG8180-RA 62..2312 1..2251 11255 100 Plus
CG8180.a 2629 CG8180.a 62..2312 1..2251 11255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11369377..11369956 580..1 2900 100 Minus
chr2R 21145070 chr2R 11360323..11360892 1782..1213 2790 99.3 Minus
chr2R 21145070 chr2R 11359611..11360080 2251..1782 2335 99.8 Minus
chr2R 21145070 chr2R 11363084..11363494 992..582 2025 99.5 Minus
chr2R 21145070 chr2R 11361031..11361251 1213..993 1105 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15482233..15482812 580..1 2900 100 Minus
2R 25286936 2R 15473177..15473746 1782..1213 2850 100 Minus
2R 25286936 2R 15472465..15472934 2251..1782 2350 100 Minus
2R 25286936 2R 15475941..15476354 992..579 2070 100 Minus
2R 25286936 2R 15473885..15474105 1213..993 1105 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15483432..15484011 580..1 2900 100 Minus
2R 25260384 2R 15474376..15474945 1782..1213 2850 100 Minus
2R 25260384 2R 15473664..15474133 2251..1782 2350 100 Minus
2R 25260384 2R 15477140..15477553 992..579 2070 100 Minus
2R 25260384 2R 15475084..15475304 1213..993 1105 100 Minus
Blast to na_te.dros performed 2019-03-16 20:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6896 1937..2118 247 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2393 2032..2120 169 70 Plus

LD38554.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:19 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11359611..11359804 2058..2251 99 == Minus
chr2R 11359875..11360079 1783..1987 100 <- Minus
chr2R 11360323..11360891 1214..1782 99 <- Minus
chr2R 11361031..11361251 993..1213 100 <- Minus
chr2R 11363084..11363496 580..992 99 <- Minus
chr2R 11369378..11369956 1..579 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:25 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 396..2129 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:00 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 396..2129 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:34 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 396..2129 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:24 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 396..2129 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:05 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 1..1734 396..2129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:24 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 22..2272 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:00 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 22..2272 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:34 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 23..2273 1..2251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:25 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 22..2272 1..2251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:05 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
CG8180-RA 23..2273 1..2251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:19 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15472465..15472933 1783..2251 100 <- Minus
2R 15473177..15473745 1214..1782 100 <- Minus
2R 15473885..15474105 993..1213 100 <- Minus
2R 15475941..15476353 580..992 100 <- Minus
2R 15482234..15482812 1..579 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:19 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15472465..15472933 1783..2251 100 <- Minus
2R 15473177..15473745 1214..1782 100 <- Minus
2R 15473885..15474105 993..1213 100 <- Minus
2R 15475941..15476353 580..992 100 <- Minus
2R 15482234..15482812 1..579 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:19 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15472465..15472933 1783..2251 100 <- Minus
2R 15473177..15473745 1214..1782 100 <- Minus
2R 15473885..15474105 993..1213 100 <- Minus
2R 15475941..15476353 580..992 100 <- Minus
2R 15482234..15482812 1..579 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:34 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11359970..11360438 1783..2251 100 <- Minus
arm_2R 11360682..11361250 1214..1782 100 <- Minus
arm_2R 11361390..11361610 993..1213 100 <- Minus
arm_2R 11363446..11363858 580..992 100 <- Minus
arm_2R 11369739..11370317 1..579 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:49 Download gff for LD38554.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15473664..15474132 1783..2251 100 <- Minus
2R 15474376..15474944 1214..1782 100 <- Minus
2R 15475084..15475304 993..1213 100 <- Minus
2R 15477140..15477552 580..992 100 <- Minus
2R 15483433..15484011 1..579 100   Minus

LD38554.pep Sequence

Translation from 395 to 2128

> LD38554.pep
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTN*

LD38554.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11867-PA 580 GF11867-PA 2..580 4..577 2088 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22352-PA 576 GG22352-PA 1..527 1..527 2449 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21649-PA 623 GH21649-PA 1..546 1..525 1836 69.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PC 577 CG8180-PC 1..577 1..577 3013 100 Plus
CG8180-PA 577 CG8180-PA 1..577 1..577 3013 100 Plus
CG8180-PB 594 CG8180-PB 1..594 1..577 2985 97.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20101-PA 616 GI20101-PA 17..541 6..525 1772 70.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20040-PA 573 GL20040-PA 20..554 32..564 1864 74.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20873-PA 563 GA20873-PA 20..509 32..528 1857 78.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20138-PA 584 GM20138-PA 1..584 1..577 2562 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25616-PA 577 GD25616-PA 1..577 1..577 2961 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19870-PA 594 GJ19870-PA 22..533 6..525 1723 73.1 Plus
Dvir\GJ15452-PA 305 GJ15452-PA 1..244 283..525 839 76.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23206-PA 588 GK23206-PA 41..544 36..527 1755 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14152-PA 587 GE14152-PA 1..575 1..566 2422 88.7 Plus

LD38554.hyp Sequence

Translation from 395 to 2128

> LD38554.hyp
MATAACVRCAQQQQQKQQQHAAHAQQQQRRNSPRILHIYCAWALITLLAA
SAAMVQSAAVFGDLLSHPTFKPLCSAQHEHFIESDGKESSLIIELKPGLY
GAEHASCSRILSAPPNYGFIVRLILPKLPHGQPLDAATTRSPPTNIMAAA
AGGNNSSKLRRTGKSGEMTTDSSEPLNTTRAIVSSAPTRLLGRTCPLNIF
SSLDPHTAQWRVDPCQLEDTASEMEDPVRLFHGRVKIVWEHGQHALRSKL
MVTVLGKGEQCKDGSKHQCLKIGDEPILCISKELSCDGIRHCPYSNEYDS
DEDYELCSKQRRPGAGKLAAGLESDLFEQFALEVFRNLFANDAPTAPEDL
PRNGSDGGEGLGNSTATSTTTLRKVQTKDMKKAGGDGSPISIDPKLLTEG
DQQRPDNDTTEMGVGTGAGSGFTRRNSTRSGLHSDLSKYGPWGYLMLGML
LCGGALLICGLWASASQHAVNNEREAALAAANGGGNGGGDHLGATSPPNY
EELDPPPAYSVLFPNQKAASSTTLNLDATAASTTAAAAAAAAAAATAAAA
TAAATALAGATPSDSAQQHQQQEQPTN*

LD38554.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8180-PC 577 CG8180-PC 1..577 1..577 3013 100 Plus
CG8180-PA 577 CG8180-PA 1..577 1..577 3013 100 Plus
CG8180-PB 594 CG8180-PB 1..594 1..577 2985 97.1 Plus