Clone LD38682 Report

Search the DGRC for LD38682

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:386
Well:82
Vector:pOT2
Associated Gene/Transcriptdgt3-RB
Protein status:LD38682.pep: validated full length
Preliminary Size:1863
Sequenced Size:1765

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3221 2001-01-01 Release 2 assignment
CG3221 2001-09-19 Blastp of sequenced clone
CG3221 2003-01-01 Sim4 clustering to Release 3
dgt3 2008-04-29 Release 5.5 accounting
dgt3 2008-08-15 Release 5.9 accounting
dgt3 2008-12-18 5.12 accounting

Clone Sequence Records

LD38682.complete Sequence

1765 bp (1765 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058678

> LD38682.complete
CGATCTGCTGAGCAACTCGGAATTCTTCAAGAAGCTGGGAGTGGACAGCT
CGAACCAGTGGATTCTGTACGATGAGCAGATGGAGATGTTCTTCAAGTTC
CTGTCCGGGAACATCACGGATGCAAATATCCTCACAGAGCGACAGGTTCT
GGAGCGGGAGGAGATGCAGCGGCGGGGCGAGTGGCTAAGTGCTTCGGATC
GCGAGCTCAAGCTCCTGCAAATCGAGGCCGAAAGTCCGGGGCTTCTCAAC
TACAAGCAGCAGGATGTCGACGCCTTGACCATGAGCATTGAGGCGATCGA
AGATGCCTCAAGGGATTATGCTACGCTTCTGGAAGATATGATGACCACAA
AGCACTCGATAACTAAGCACCTAGGCGAGGTGGAGTGCGTCACCGCCGAG
TTGCAACTGAGGGAGAAGGATCTGATAGCCGAGTGCCAGTCCAAAGCCAA
GCAACTGGAGGAACTGCAGCAGGAGAACTGCCGGCTAAGCGCCGAAGCCA
AAAAGGCATTCACCGCCCCACAGTTGCCGCCTCTATTCATGCATCAACTG
CCATTGGAGCAGTATTTCCACAAATGCGATTCATTTATGCAATACTTTAC
TCTGTATGTGAAGGAGAATTTTAAGATCCAGGACTATGATGAGTTCCAGA
GCGCGGAGGAAGATCTTGGGCGCGAAAAGGCCAAGCTGGAGGACTTGGAA
CGTGGCATCCAGTTTTATGCACTATCCTACATAAGAACAAAGGCCAAGGT
GAAGGCCACGCAGTGTCTTATTGACCAGTTGGATCTTGGCAAGATTCACT
GCCTCAGTTTAACGGACATGGCGCGTGAAATGCACGATCTGCAGCTGCTC
AACGACTATCAACTGAGCAATACACACGATACGCTTTTAAACGATCTAAC
CATTCACATTCAGCAGCACACCCAGCGACGTATTGAGCTGGTTCTCTACG
AGAACACTAAACTGAAGTTGGAAAGAGCTGTTCGACGTCATGAAAGCGAC
AAGAAGCTCACTAAAATCATCTCAGATGCTCTGTCCAATGCGGAATTGCT
GTGGATTGCGATCCAACTGGACTGCGACAAGAAGCGCAACTGCCTGGACA
CTTCGGAGGAGTTGCGCGACCAAGCGCAGGCCACTTGGCAAAGAATCCAG
ACCATGCGCTCCATTAACGCCAGTTATCAGGGCATTTGTGCCCAGTTTGT
GCAGGAGATTGCCAATTTGTTGTCAGCCCACTTGGGACAGAACATAAAGG
CAACTGAGGCCAAGGCTTGTCTCTTCGAATACGAAAAGTTCGGTCGCCTG
CTGTCTTACTCCTTTCAGAGCATGCTGAACCGAAAGTCGTGTGCTGCTGT
TCAGGATCAACTGGCAGAACTCAAGCGCTTGGAGCAGACTTTGCGGCCGT
TTGTCTATGATTCCCCATTGGAGCAGCCCATGTTTGAGAACGTTCGCTAC
TTGAGCGCCATATACAATGTCACCCAGCAGCAAACTCGCCTGGATGAGTC
AGGGCGTTCCTTGCGAAAAGATTTCCTGGAAAATGTCGTGGGGCGCATTG
AGCGGGATAAACTGTATCGCTATAGCGTAGTCCTGTGGATTTGGTTTCTC
ACTGAGCCGCAGCGCATGATGCATGCAATTGATGAGGTCAAAAAGGCAGC
CGCTGCAGTAATTCGTCCAGGTGGTGGTCTGCACCGCAAGTGAACTTAGT
TGATTTAGAATCTGGTCAGTAAATAAATGTTAAATTATTCAAAAATAAAA
AAAAAAAAAAAAAAA

LD38682.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
dgt3-RB 1909 dgt3-RB 64..1812 1..1749 8745 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16879201..16879867 1371..705 3260 99.3 Minus
chr2R 21145070 chr2R 16879928..16880290 705..343 1815 100 Minus
chr2R 21145070 chr2R 16880351..16880680 343..14 1590 98.8 Minus
chr2R 21145070 chr2R 16878704..16878900 1746..1550 985 100 Minus
chr2R 21145070 chr2R 16878964..16879142 1550..1372 850 98.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20992774..20993440 1371..705 3335 100 Minus
2R 25286936 2R 20993501..20993863 705..343 1815 100 Minus
2R 25286936 2R 20993925..20994254 343..14 1650 100 Minus
2R 25286936 2R 20992273..20992472 1749..1550 1000 100 Minus
2R 25286936 2R 20992536..20992714 1550..1372 895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20993973..20994639 1371..705 3335 100 Minus
2R 25260384 2R 20994700..20995062 705..343 1815 100 Minus
2R 25260384 2R 20995124..20995453 343..14 1650 100 Minus
2R 25260384 2R 20993472..20993671 1749..1550 1000 100 Minus
2R 25260384 2R 20993735..20993913 1550..1372 895 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:04:26 has no hits.

LD38682.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:22 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16878704..16878900 1550..1746 100 <- Minus
chr2R 16878965..16879142 1372..1549 98 <- Minus
chr2R 16879201..16879866 706..1371 99 <- Minus
chr2R 16879928..16880290 343..705 100 <- Minus
chr2R 16880352..16880680 14..342 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:58 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 6..1698 1..1693 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:03 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 6..1698 1..1693 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:08 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 6..1698 1..1693 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:27 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 6..1698 1..1693 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:20 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 6..1698 1..1693 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:21 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 19..1764 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:03 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 19..1764 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:08 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 64..1809 1..1746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:27 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 19..1764 1..1746 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:20 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
dgt3-RB 64..1809 1..1746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:22 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20992276..20992472 1550..1746 100 <- Minus
2R 20992537..20992714 1372..1549 100 <- Minus
2R 20992774..20993439 706..1371 100 <- Minus
2R 20993501..20993863 343..705 100 <- Minus
2R 20993926..20994254 14..342 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:22 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20992276..20992472 1550..1746 100 <- Minus
2R 20992537..20992714 1372..1549 100 <- Minus
2R 20992774..20993439 706..1371 100 <- Minus
2R 20993501..20993863 343..705 100 <- Minus
2R 20993926..20994254 14..342 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:22 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20992276..20992472 1550..1746 100 <- Minus
2R 20992537..20992714 1372..1549 100 <- Minus
2R 20992774..20993439 706..1371 100 <- Minus
2R 20993501..20993863 343..705 100 <- Minus
2R 20993926..20994254 14..342 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:08 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16880042..16880219 1372..1549 100 <- Minus
arm_2R 16879781..16879977 1550..1746 100 <- Minus
arm_2R 16880279..16880944 706..1371 100 <- Minus
arm_2R 16881006..16881368 343..705 100 <- Minus
arm_2R 16881431..16881759 14..342 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:52 Download gff for LD38682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20993973..20994638 706..1371 100 <- Minus
2R 20994700..20995062 343..705 100 <- Minus
2R 20995125..20995453 14..342 100 <- Minus
2R 20993736..20993913 1372..1549 100 <- Minus
2R 20993475..20993671 1550..1746 100 <- Minus

LD38682.hyp Sequence

Translation from 0 to 1692

> LD38682.hyp
DLLSNSEFFKKLGVDSSNQWILYDEQMEMFFKFLSGNITDANILTERQVL
EREEMQRRGEWLSASDRELKLLQIEAESPGLLNYKQQDVDALTMSIEAIE
DASRDYATLLEDMMTTKHSITKHLGEVECVTAELQLREKDLIAECQSKAK
QLEELQQENCRLSAEAKKAFTAPQLPPLFMHQLPLEQYFHKCDSFMQYFT
LYVKENFKIQDYDEFQSAEEDLGREKAKLEDLERGIQFYALSYIRTKAKV
KATQCLIDQLDLGKIHCLSLTDMAREMHDLQLLNDYQLSNTHDTLLNDLT
IHIQQHTQRRIELVLYENTKLKLERAVRRHESDKKLTKIISDALSNAELL
WIAIQLDCDKKRNCLDTSEELRDQAQATWQRIQTMRSINASYQGICAQFV
QEIANLLSAHLGQNIKATEAKACLFEYEKFGRLLSYSFQSMLNRKSCAAV
QDQLAELKRLEQTLRPFVYDSPLEQPMFENVRYLSAIYNVTQQQTRLDES
GRSLRKDFLENVVGRIERDKLYRYSVVLWIWFLTEPQRMMHAIDEVKKAA
AAVIRPGGGLHRK*

LD38682.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
dgt3-PB 565 CG3221-PB 3..565 1..563 2883 100 Plus

LD38682.pep Sequence

Translation from 79 to 1692

> LD38682.pep
MEMFFKFLSGNITDANILTERQVLEREEMQRRGEWLSASDRELKLLQIEA
ESPGLLNYKQQDVDALTMSIEAIEDASRDYATLLEDMMTTKHSITKHLGE
VECVTAELQLREKDLIAECQSKAKQLEELQQENCRLSAEAKKAFTAPQLP
PLFMHQLPLEQYFHKCDSFMQYFTLYVKENFKIQDYDEFQSAEEDLGREK
AKLEDLERGIQFYALSYIRTKAKVKATQCLIDQLDLGKIHCLSLTDMARE
MHDLQLLNDYQLSNTHDTLLNDLTIHIQQHTQRRIELVLYENTKLKLERA
VRRHESDKKLTKIISDALSNAELLWIAIQLDCDKKRNCLDTSEELRDQAQ
ATWQRIQTMRSINASYQGICAQFVQEIANLLSAHLGQNIKATEAKACLFE
YEKFGRLLSYSFQSMLNRKSCAAVQDQLAELKRLEQTLRPFVYDSPLEQP
MFENVRYLSAIYNVTQQQTRLDESGRSLRKDFLENVVGRIERDKLYRYSV
VLWIWFLTEPQRMMHAIDEVKKAAAAVIRPGGGLHRK*

LD38682.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12731-PA 565 GF12731-PA 29..565 1..537 2271 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20816-PA 565 GG20816-PA 29..565 1..537 2692 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11813-PA 574 GH11813-PA 29..574 1..537 1665 58.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
dgt3-PB 565 CG3221-PB 29..565 1..537 2747 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15999-PA 572 GI15999-PA 30..572 2..537 1795 62.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10192-PA 573 GL10192-PA 29..573 1..537 1915 67.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16759-PA 573 GA16759-PA 29..573 1..537 1902 67.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15762-PA 565 GM15762-PA 29..565 1..537 2820 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25237-PA 565 GD25237-PA 29..565 1..537 2830 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18725-PA 572 GJ18725-PA 29..572 1..537 1813 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23253-PA 571 GK23253-PA 29..571 1..537 1527 56.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13755-PA 565 GE13755-PA 29..565 1..537 2665 93.3 Plus