Clone LD38689 Report

Search the DGRC for LD38689

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:386
Well:89
Vector:pOT2
Associated Gene/TranscriptCG1550-RA
Protein status:LD38689.pep: gold
Preliminary Size:1947
Sequenced Size:1986

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1550 2002-01-01 Sim4 clustering to Release 2
CG1550 2002-05-18 Blastp of sequenced clone
CG1550 2003-01-01 Sim4 clustering to Release 3
CG1550 2008-04-29 Release 5.5 accounting
CG1550 2008-08-15 Release 5.9 accounting
CG1550 2008-12-18 5.12 accounting

Clone Sequence Records

LD38689.complete Sequence

1986 bp (1986 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118960

> LD38689.complete
ATACGGTCACTTTAACCGGGTCGTGCTCCAAGAGAATTCCTTTCTGCAAA
TGGACGGCATAAACAAGTACAACGAGTTTGTGGCGCTGCACAAGCCACAG
CTGGAGTCCTCCGGTATTCCGCTGATATTTTGGCCGGCTCTGTTCCGAAA
ACTGACCACGGAAACCTTCGATGCCGGCGAGGCACTCCAGTTGATGCTGA
TCGACTACGATGAGGATGAACAGCAGAATCCGGCCGAGGACGATGACAGT
CCCAACCCTGTGTTCGCACTGGGCGTAGCCCGGGAGCAGGGCATAAAGGC
CAGTGATCCTCAGGCCATCTATTTGGTCGATCACGCCTGGACGTTCCGGC
TAAACGGTGCTCGGCAGCAGCTGGAGGAGTATCCGCAACTGGCGGAGCGA
CTTTCTGCCATCACTGGCGTTGACCTTGAGCTGAAGGATCGGGTCGACAA
GATCCTGCGCCGTCTGTGGAAGTACTGCCACGCCTACTCCATCGGCAGCG
AAGGCTTGTCGGACGAGGAGCGCCAGCCCATCTGGTATGTGATGGACGAA
GTCGGCTCGGCTGTGAACCACTCGGACGATCCCAACTTTCGACTTGTTCC
GCTGCTCTACCTAAACACCCAAACCACATACAGTGTGCTCTTTCCGATTC
GGGACTGCGATGTCGGAGAAGCGGTGACCCGCGATATGGTGGAGCACGTG
GCAAAGGATGCGCCCCAGCGGCCTGCGCTGCTTTTACCCTGGCGCGATGC
CGACCTCACGGGCGAAAGCTTCTTGCAGGTTGAACCCCGGGCAGATTACT
TTACCAGCGGTCACATCCCTGAGACCTATCCCAAAGGCGATACTGTTCCA
CTGCCAGCCAGGTCACGTTGCGATCCGCTGAAGGTGTATGCAGAGTACGA
GGTGGTGCGCCGTCATCTAACTTCGTCCGAGTTCATCCTAGTTAACAACG
CAGACGAGGCGGATGTCCTTTGGCTCACACACCACTTCAAGAATTTCGAG
GATTTTGCAGATAGGTCGCCCGGCAAGTTCATCAATCAGTTTCCGTTCGA
GTACGTGATCACCATCAAGGATCTCCTTAGCATTGTGGGCCGCCGGGCGG
CCAAGGAGCACCATGATAGCCTTACGCTTGAAACGTTTCCGGCATGGCTC
CCCACCACCTATAATCTGTCCACCGAAGTAAAGGAGTTCGCGGCTTACTA
CCAAACGAGAGCAGCCAAGGGCCTCGACAACCACTGGATTATCAAGCCCT
GGAACTTGGCTCGCGGATTGGACACACATATCACGGACAACATCAAGCAG
ATCGTACGTCTACCGGCCACTGGACCGAAGATAGCGCAGAAGTACATCGA
GCGACCAGTTCTCTTTAGTCGGCAGGAGGTGGAAGGCAGCGTTAAGTTCG
ATATTCGCTATGTAATCCTGTTGAAAAGCGTCAAACCCCTGAAGGCATAT
ATACACCGGAAGTTCTTCCTGCGTTTCGCAAACCATCCCTTCACGCTGGA
TCACTTCGATGACTACGAGAAACACTACACGGTGATGAACTACCAGACGG
AGGCGCAGCTGCATCACGTCAAGTGCGACGACTTCCTGACGCTCTGGCAG
GAACAGTATCCGGATAACGATTGGTCGGCTCTGGAGCAGCAGATCTGTAG
CATGCTGCTCGAGGTGCTTCAGTGCGCCAGTCAAGCAGATCCACCCTGCG
GCCTGGCTCCTTGTGCCCAATCACGAGCTCTTTACGCAGCCGACATCATG
CTGCGGTGGAAGGACGATAAGGAGAAGTTGATGGAGCCCCAGTTGCTGGA
AATCAACTGGACTCCGGACTGCAAACGCGCATGCGACTACTATCCCGACT
TCTTCAACGACATCTTCCGTCTGCTCTTCCTAGACGAAGAAAACGACGAT
AGCTTCCGGGTACTGACGCCAGACAATTGACATTAACCGAGCAAATAAAC
CCAGTTATCCCAAAGTTTAAAAAAAAAAAAAAAAAA

LD38689.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1550-RA 1968 CG1550-RA 1..1968 1..1968 9840 100 Plus
sax-RA 2498 sax-RA 2441..2498 1970..1913 290 100 Minus
sax-RB 2772 sax-RB 2715..2772 1970..1913 290 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3697389..3699356 1968..1 9840 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7810066..7812035 1970..1 9850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7811265..7813234 1970..1 9850 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:05:42 has no hits.

LD38689.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:06:51 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3697389..3699356 1..1968 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:59 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1881 50..1930 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:43:23 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1881 50..1930 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:15 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1881 50..1930 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:35:31 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1881 50..1930 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:39 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1881 50..1930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:17:55 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1961 1..1961 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:43:23 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1961 1..1961 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:15 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1961 8..1968 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:35:31 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1961 1..1961 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:39 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
CG1550-RA 1..1961 8..1968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:51 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7810068..7812035 1..1968 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:51 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7810068..7812035 1..1968 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:51 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7810068..7812035 1..1968 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:15 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3697573..3699540 1..1968 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:07:55 Download gff for LD38689.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7811267..7813234 1..1968 100   Minus

LD38689.hyp Sequence

Translation from 0 to 1929

> LD38689.hyp
YGHFNRVVLQENSFLQMDGINKYNEFVALHKPQLESSGIPLIFWPALFRK
LTTETFDAGEALQLMLIDYDEDEQQNPAEDDDSPNPVFALGVAREQGIKA
SDPQAIYLVDHAWTFRLNGARQQLEEYPQLAERLSAITGVDLELKDRVDK
ILRRLWKYCHAYSIGSEGLSDEERQPIWYVMDEVGSAVNHSDDPNFRLVP
LLYLNTQTTYSVLFPIRDCDVGEAVTRDMVEHVAKDAPQRPALLLPWRDA
DLTGESFLQVEPRADYFTSGHIPETYPKGDTVPLPARSRCDPLKVYAEYE
VVRRHLTSSEFILVNNADEADVLWLTHHFKNFEDFADRSPGKFINQFPFE
YVITIKDLLSIVGRRAAKEHHDSLTLETFPAWLPTTYNLSTEVKEFAAYY
QTRAAKGLDNHWIIKPWNLARGLDTHITDNIKQIVRLPATGPKIAQKYIE
RPVLFSRQEVEGSVKFDIRYVILLKSVKPLKAYIHRKFFLRFANHPFTLD
HFDDYEKHYTVMNYQTEAQLHHVKCDDFLTLWQEQYPDNDWSALEQQICS
MLLEVLQCASQADPPCGLAPCAQSRALYAADIMLRWKDDKEKLMEPQLLE
INWTPDCKRACDYYPDFFNDIFRLLFLDEENDDSFRVLTPDN*

LD38689.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1550-PA 626 CG1550-PA 1..626 17..642 3358 100 Plus
CG3964-PA 982 CG3964-PA 467..698 300..547 162 25.5 Plus
CG3964-PC 989 CG3964-PC 467..698 300..547 162 25.5 Plus
CG3964-PB 989 CG3964-PB 467..698 300..547 162 25.5 Plus

LD38689.pep Sequence

Translation from 49 to 1929

> LD38689.pep
MDGINKYNEFVALHKPQLESSGIPLIFWPALFRKLTTETFDAGEALQLML
IDYDEDEQQNPAEDDDSPNPVFALGVAREQGIKASDPQAIYLVDHAWTFR
LNGARQQLEEYPQLAERLSAITGVDLELKDRVDKILRRLWKYCHAYSIGS
EGLSDEERQPIWYVMDEVGSAVNHSDDPNFRLVPLLYLNTQTTYSVLFPI
RDCDVGEAVTRDMVEHVAKDAPQRPALLLPWRDADLTGESFLQVEPRADY
FTSGHIPETYPKGDTVPLPARSRCDPLKVYAEYEVVRRHLTSSEFILVNN
ADEADVLWLTHHFKNFEDFADRSPGKFINQFPFEYVITIKDLLSIVGRRA
AKEHHDSLTLETFPAWLPTTYNLSTEVKEFAAYYQTRAAKGLDNHWIIKP
WNLARGLDTHITDNIKQIVRLPATGPKIAQKYIERPVLFSRQEVEGSVKF
DIRYVILLKSVKPLKAYIHRKFFLRFANHPFTLDHFDDYEKHYTVMNYQT
EAQLHHVKCDDFLTLWQEQYPDNDWSALEQQICSMLLEVLQCASQADPPC
GLAPCAQSRALYAADIMLRWKDDKEKLMEPQLLEINWTPDCKRACDYYPD
FFNDIFRLLFLDEENDDSFRVLTPDN*

LD38689.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11237-PA 626 GF11237-PA 1..625 1..625 2941 85.3 Plus
Dana\GF15040-PA 1003 GF15040-PA 479..710 284..531 165 25.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10708-PA 626 GG10708-PA 1..626 1..626 3192 93.9 Plus
Dere\GG23690-PA 1068 GG23690-PA 575..769 284..494 169 29.8 Plus
Dere\GG24974-PA 988 GG24974-PA 466..697 284..531 166 25.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21579-PA 631 GH21579-PA 1..630 1..626 2673 78 Plus
Dgri\GH16662-PA 706 GH16662-PA 102..448 235..590 168 26.2 Plus
Dgri\GH11195-PA 971 GH11195-PA 444..675 284..531 165 26.3 Plus
Dgri\GH10942-PA 720 GH10942-PA 371..568 391..590 162 30.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
TTLL12-PA 626 CG1550-PA 1..626 1..626 3358 100 Plus
TTLL4B-PA 982 CG3964-PA 467..698 284..531 162 25.5 Plus
TTLL4B-PC 989 CG3964-PC 467..698 284..531 162 25.5 Plus
TTLL4B-PB 989 CG3964-PB 467..698 284..531 162 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19551-PA 633 GI19551-PA 1..630 1..626 2558 75.2 Plus
Dmoj\GI18116-PA 994 GI18116-PA 473..704 284..531 161 25.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11240-PA 627 GL11240-PA 1..627 1..626 2746 79.4 Plus
Dper\GL18685-PA 977 GL18685-PA 455..686 284..531 167 25.5 Plus
Dper\GL26212-PA 795 GL26212-PA 429..654 370..590 159 28 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13769-PA 627 GA13769-PA 1..627 1..626 2736 79.1 Plus
Dpse\GA17808-PA 983 GA17808-PA 458..689 284..531 168 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20754-PA 626 GM20754-PA 1..626 1..626 3251 95.7 Plus
Dsec\GM18785-PA 559 GM18785-PA 66..260 284..494 170 29.8 Plus
Dsec\GM18444-PA 986 GM18444-PA 464..695 284..531 166 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10218-PA 626 GD10218-PA 1..626 1..626 3262 96.2 Plus
Dsim\GD15298-PA 424 GD15298-PA 1..405 1..405 2021 92.8 Plus
Dsim\GD23261-PA 986 GD23261-PA 464..695 284..531 166 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21123-PA 632 GJ21123-PA 1..631 1..626 2583 76.5 Plus
Dvir\GJ10485-PA 716 GJ10485-PA 135..457 257..589 167 26.8 Plus
Dvir\GJ14582-PA 1058 GJ14582-PA 561..755 284..494 165 28.6 Plus
Dvir\GJ16303-PA 1000 GJ16303-PA 473..704 284..531 159 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22076-PA 630 GK22076-PA 1..630 1..623 2438 72.2 Plus
Dwil\GK13222-PA 353 GK13222-PA 216..346 435..559 460 65.6 Plus
Dwil\GK13222-PA 353 GK13222-PA 4..55 85..136 211 76.9 Plus
Dwil\GK15485-PA 1039 GK15485-PA 506..737 284..531 163 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23607-PA 618 GE23607-PA 1..618 1..626 3026 89.3 Plus
Dyak\GE18502-PA 1068 GE18502-PA 575..769 284..494 170 29.8 Plus
Dyak\GE18264-PA 990 GE18264-PA 468..699 284..531 166 25.5 Plus