Clone LD38705 Report

Search the DGRC for LD38705

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:387
Well:5
Vector:pOT2
Associated Gene/TranscriptAtg18a-RA
Protein status:LD38705.pep: gold
Preliminary Size:2264
Sequenced Size:2113

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7986 2001-01-01 Release 2 assignment
CG7986 2001-07-04 Blastp of sequenced clone
Atg18 2008-04-29 Release 5.5 accounting
Atg18 2008-08-15 Release 5.9 accounting
Atg18 2008-12-18 5.12 accounting

Clone Sequence Records

LD38705.complete Sequence

2113 bp (2113 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051899

> LD38705.complete
TCCCACTTGCCTTTGTGTGGGTGCTGGTGTGTGTGCAAAACAGAGCAAAA
ACAATTGCGCGACAAGAAATCCAAATATCATTAAACATTACGTGGATTCA
GTTTAATAAACGCCTTGCAGCCAACCACTAGTCAACAGCGGTGTCCTGCG
TATATTGATAGGGCCGAGGCAGAGGTGTTAGCTATACAAATAGGACCCCA
GCCCCTCCCACACAGAAACCATGATGAGCCTGCTCGGGCGCACCGATGTG
GATGCGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGC
CGTGGCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACT
CGACCCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATC
GAGCGTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACC
ACGCAAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACT
ACTCGTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTG
ATTGTGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAA
GGTGGTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTG
CCCTCTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTG
ACTGCTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGAC
CATGATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCT
CGGGCACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTC
TTCAGCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAA
GCGCTGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATC
TGGTGTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGC
AGTGCCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGA
CTGGATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCT
ACCTGCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCC
TCGGTCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCAC
GATACAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGT
ACGTGTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAG
AGGCACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGC
TTAACTGTTCGCTTCTCGCACACACTTCACACTTACACACATCCCAACCA
AACCCACAATCGAAACAAATTCTCTAGTTGATTCACCTCAAACTCTAGGC
CTTAACAGTGGCGTGAGCATTGGCGGAGCAGCTGGAGTTCCGCCGAGCAG
TGCAAGTGCAGCCGGAGCAGGCACTGGTGGAAGTGGCGGTGATGGCAAGT
CGGCTGTTTCTGTTACCGGTGGTGTCGACAAACCAAGTAGCTCCTATGCG
TCGGCCGTGAAGGGTGACGATCCCGTGGGACCCTCATCCGCTTAGACAAG
GTCAATGATCAAAAATGAGAGATGCAGCGATGGTAAACGAAACTCACTCC
TCAAAGTAATAAGGACGATGATGCTAAAGTGATTACAATGATGCTTGGCG
ACTGGCGGCGGCGATAATGATGATGAATAAACGACGGTGGCTCTGTGGCG
TCAAGCGTATTTAAGTAAATAAATAGGTCATAGACTTAATTTAGCTCTTA
ACGTTGTCAGCGATGATTCTTCCTCGTTTTGTACCAGCCAATATTCCTTT
GTACGGCCTCTCCCTACCCAAAACATTTTTTAGTTTTAAGCCTCCGTTCC
TGGCGCTGCCATTGGAATGTGAAATGCTTTTGTCATACACTCCTAAGTTA
GTTGTTAATTAATAATTTAGACGGATTTACAGATTCGCTTTGATATTTGA
GTTGCCAGCTTTTTATACAAAATAAACGGCCTTTGCAAATTAAAAAAAAA
AAAAAAAAAAAAA

LD38705.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18.e 2632 Atg18.e 145..2236 1..2092 10460 100 Plus
Atg18-RA 2371 Atg18-RA 145..2236 1..2092 10460 100 Plus
Atg18.c 2129 Atg18.c 230..2129 192..2091 9500 100 Plus
Atg18.c 2129 Atg18.c 1..193 1..193 965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8181796..8182676 1217..2091 4205 98.8 Plus
chr3L 24539361 chr3L 8179776..8180543 292..1059 3825 99.9 Plus
chr3L 24539361 chr3L 8178964..8179157 1..194 970 100 Plus
chr3L 24539361 chr3L 8181250..8181409 1059..1218 785 99.4 Plus
chr3L 24539361 chr3L 8179440..8179539 192..291 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8189840..8190715 1217..2092 4380 100 Plus
3L 28110227 3L 8187813..8188580 292..1059 3840 100 Plus
3L 28110227 3L 8187001..8187194 1..194 970 100 Plus
3L 28110227 3L 8189286..8189445 1059..1218 800 100 Plus
3L 28110227 3L 8187477..8187576 192..291 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8182940..8183815 1217..2092 4380 100 Plus
3L 28103327 3L 8180913..8181680 292..1059 3840 100 Plus
3L 28103327 3L 8180101..8180294 1..194 970 100 Plus
3L 28103327 3L 8182386..8182545 1059..1218 800 100 Plus
3L 28103327 3L 8180577..8180676 192..291 500 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:06:07 has no hits.

LD38705.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:54 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8178964..8179156 1..193 100 -> Plus
chr3L 8179442..8179539 194..291 100 -> Plus
chr3L 8179776..8180543 292..1059 99 -> Plus
chr3L 8181251..8181409 1060..1218 99 -> Plus
chr3L 8181798..8182676 1219..2091 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:00 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 1..1134 221..1354 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:02 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 1..1134 221..1354 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:53:10 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 1..1134 221..1354 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:47:29 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RC 1..1134 221..1354 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:19 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RB 1..1134 221..1354 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:10:04 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 1..2091 1..2091 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:02 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 1..2091 1..2091 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:10 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 7..2097 1..2091 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:47:29 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18-RA 1..2091 1..2091 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:19 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18a-RA 7..2097 1..2091 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:54 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8187001..8187193 1..193 100 -> Plus
3L 8187479..8187576 194..291 100 -> Plus
3L 8187813..8188580 292..1059 100 -> Plus
3L 8189287..8189445 1060..1218 100 -> Plus
3L 8189842..8190714 1219..2091 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:54 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8187001..8187193 1..193 100 -> Plus
3L 8187479..8187576 194..291 100 -> Plus
3L 8187813..8188580 292..1059 100 -> Plus
3L 8189287..8189445 1060..1218 100 -> Plus
3L 8189842..8190714 1219..2091 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:54 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8187001..8187193 1..193 100 -> Plus
3L 8187479..8187576 194..291 100 -> Plus
3L 8187813..8188580 292..1059 100 -> Plus
3L 8189287..8189445 1060..1218 100 -> Plus
3L 8189842..8190714 1219..2091 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:10 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8180101..8180293 1..193 100 -> Plus
arm_3L 8180579..8180676 194..291 100 -> Plus
arm_3L 8180913..8181680 292..1059 100 -> Plus
arm_3L 8182387..8182545 1060..1218 100 -> Plus
arm_3L 8182942..8183814 1219..2091 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:25:27 Download gff for LD38705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8180101..8180293 1..193 100 -> Plus
3L 8180579..8180676 194..291 100 -> Plus
3L 8180913..8181680 292..1059 100 -> Plus
3L 8182387..8182545 1060..1218 100 -> Plus
3L 8182942..8183814 1219..2091 100   Plus

LD38705.hyp Sequence

Translation from 220 to 1353

> LD38705.hyp
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGA*

LD38705.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-PG 377 CG7986-PG 1..377 1..377 1917 100 Plus
Atg18a-PC 377 CG7986-PC 1..377 1..377 1917 100 Plus
Atg18a-PB 377 CG7986-PB 1..377 1..377 1917 100 Plus
Atg18a-PA 377 CG7986-PA 1..377 1..377 1917 100 Plus
Atg18a-PE 447 CG7986-PE 1..375 1..375 1907 100 Plus

LD38705.pep Sequence

Translation from 220 to 1353

> LD38705.pep
MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY
HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI
LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE
HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT
ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT
ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT
DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT
VEGAECQLIKRHDLRLEDHYAMDIKGA*

LD38705.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25099-PA 433 GF25099-PA 1..371 1..376 1911 95.2 Plus
Dana\GF15570-PA 472 GF15570-PA 11..374 25..368 807 47 Plus
Dana\GF16573-PA 340 GF16573-PA 1..285 2..286 298 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14476-PA 435 GG14476-PA 1..371 1..376 1954 97.6 Plus
Dere\GG21513-PA 471 GG21513-PA 6..380 17..374 822 44.8 Plus
Dere\GG14096-PA 340 GG14096-PA 1..285 2..286 296 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15493-PA 437 GH15493-PA 1..369 1..376 1835 91.8 Plus
Dgri\GH11033-PA 479 GH11033-PA 3..377 24..368 822 44.6 Plus
Dgri\GH19377-PA 340 GH19377-PA 1..285 2..286 302 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18a-PG 377 CG7986-PG 1..377 1..377 1917 100 Plus
Atg18a-PC 377 CG7986-PC 1..377 1..377 1917 100 Plus
Atg18a-PB 377 CG7986-PB 1..377 1..377 1917 100 Plus
Atg18a-PA 377 CG7986-PA 1..377 1..377 1917 100 Plus
Atg18a-PE 447 CG7986-PE 1..375 1..375 1907 100 Plus
Atg18a-PF 372 CG7986-PF 1..372 1..377 1873 98.7 Plus
Atg18a-PD 435 CG7986-PD 1..371 1..376 1869 98.7 Plus
Atg18b-PB 471 CG8678-PB 6..380 17..374 794 45.6 Plus
Atg18b-PA 471 CG8678-PA 6..380 17..374 794 45.6 Plus
CG11975-PB 340 CG11975-PB 1..285 2..286 291 29.8 Plus
CG11975-PA 340 CG11975-PA 1..285 2..286 291 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16769-PA 431 GI16769-PA 1..369 1..376 1783 92.8 Plus
Dmoj\GI17552-PA 462 GI17552-PA 3..369 24..368 828 45.3 Plus
Dmoj\GI22579-PA 340 GI22579-PA 1..285 2..286 307 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22534-PA 444 GL22534-PA 1..369 1..376 1877 94.7 Plus
Dper\GL26366-PA 505 GL26366-PA 56..412 32..368 779 45.1 Plus
Dper\GL12110-PA 340 GL12110-PA 1..285 2..286 301 29.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20742-PA 442 GA20742-PA 1..369 1..376 1880 94.7 Plus
Dpse\GA21256-PA 470 GA21256-PA 6..377 17..368 819 45.4 Plus
Dpse\GA11305-PA 340 GA11305-PA 1..285 2..286 301 29.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25025-PA 435 GM25025-PA 1..371 1..376 1960 97.9 Plus
Dsec\GM23265-PA 471 GM23265-PA 6..380 17..374 827 45.3 Plus
Dsec\GM23775-PA 340 GM23775-PA 1..285 2..286 296 29.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14059-PA 435 GD14059-PA 1..371 1..376 1967 98.4 Plus
Dsim\GD21643-PA 549 GD21643-PA 92..458 25..374 794 44.7 Plus
Dsim\GD18585-PA 340 GD18585-PA 1..285 2..286 296 29.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12513-PA 443 GJ12513-PA 1..369 1..376 1844 93.1 Plus
Dvir\GJ15537-PA 470 GJ15537-PA 6..374 25..368 828 45.9 Plus
Dvir\GJ10301-PA 340 GJ10301-PA 1..285 2..286 307 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11999-PA 451 GK11999-PA 1..369 1..376 1889 94.7 Plus
Dwil\GK14682-PA 474 GK14682-PA 1..378 23..368 763 42.7 Plus
Dwil\GK11674-PA 340 GK11674-PA 1..285 2..286 305 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21663-PA 435 GE21663-PA 1..371 1..376 1964 98.1 Plus
Dyak\GE12992-PA 471 GE12992-PA 6..380 17..374 831 45.3 Plus
Dyak\GE25918-PA 340 GE25918-PA 1..285 2..286 296 29.8 Plus