BDGP Sequence Production Resources |
Search the DGRC for LD38705
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 387 |
Well: | 5 |
Vector: | pOT2 |
Associated Gene/Transcript | Atg18a-RA |
Protein status: | LD38705.pep: gold |
Preliminary Size: | 2264 |
Sequenced Size: | 2113 |
Gene | Date | Evidence |
---|---|---|
CG7986 | 2001-01-01 | Release 2 assignment |
CG7986 | 2001-07-04 | Blastp of sequenced clone |
Atg18 | 2008-04-29 | Release 5.5 accounting |
Atg18 | 2008-08-15 | Release 5.9 accounting |
Atg18 | 2008-12-18 | 5.12 accounting |
2113 bp (2113 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051899
> LD38705.complete TCCCACTTGCCTTTGTGTGGGTGCTGGTGTGTGTGCAAAACAGAGCAAAA ACAATTGCGCGACAAGAAATCCAAATATCATTAAACATTACGTGGATTCA GTTTAATAAACGCCTTGCAGCCAACCACTAGTCAACAGCGGTGTCCTGCG TATATTGATAGGGCCGAGGCAGAGGTGTTAGCTATACAAATAGGACCCCA GCCCCTCCCACACAGAAACCATGATGAGCCTGCTCGGGCGCACCGATGTG GATGCGGGCGAAGTGTTCGTCAACTTCAACCAGAACATAACTTCCCTGGC CGTGGCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCTCCGTGGACT CGACCCTGGACAAGATCTACCACACGAAAAGCGACGAGCTGTTCCTCATC GAGCGTCTGTTCGAGAGCTCCTTGGTGGCAATAGTTTCCCAGCGAGCACC ACGCAAGCTCAAGGTGTGCCACTTTAAGAAGCAGAGCGAGATCTGCAACT ACTCGTATGCAAACACAATACTGGCCGTGAAGCTCAATCGCGAGCGATTG ATTGTGTGCCTGGAGGAGTCATTGTATATCCACAATATCCAGGACATGAA GGTGGTGCACACCATACGCGACACACCGTGCAATCCGCAGGGTCTTTGTG CCCTCTCCTCGTCGTCGGAGCACTGCTATCTGGCCTACCCAGGCAGCGTG ACTGCTGGCGAGGTACAGATCTTTGATGCCATCAACTTGCACGCCAAGAC CATGATTCCCGCCCACGACACACCTCTGGCGGCATTGGCCTTTAGTCCCT CGGGCACGGAGATAGCCACGGCCAGTGAGCGTGGCACGGTGATCCGAGTC TTCAGCTCCCAGGATGGCAGTCGACTCTTTGAACTGCGACGGGGACTAAA GCGCTGTGTGTCCATCGTTTCGCTGTCGTTTAGCACGTGCGCCGAATATC TGGTGTCCAGCTCCAACACCGAGACGGTTCACATCTTCCGGCTGGATCGC AGTGCCACGGAAACAGCCGAAGGCCATGGCAGCAAGCAGTCGAGCGACGA CTGGATGGGTTACTCGTTTTTTAGATTCTTAAGCAAAACGGTCACCAGCT ACCTGCCCACGCAGGTGACCGACGTGTTTAGCCAAGGCCGTGCCTTCGCC TCGGTCACTCTGCCGGAGGCGGGAGTGCGCAGGATGTGCGCTATTGCCAC GATACAAAAGCAGCTAAGACTTTTGATTGCCTCGCAGGATGGGTACTTGT ACGTGTATTCCATTCCCACCGTCGAGGGCGCAGAGTGCCAGCTAATAAAG AGGCACGACCTGCGGCTGGAGGACCACTATGCCATGGATATCAAAGGTGC TTAACTGTTCGCTTCTCGCACACACTTCACACTTACACACATCCCAACCA AACCCACAATCGAAACAAATTCTCTAGTTGATTCACCTCAAACTCTAGGC CTTAACAGTGGCGTGAGCATTGGCGGAGCAGCTGGAGTTCCGCCGAGCAG TGCAAGTGCAGCCGGAGCAGGCACTGGTGGAAGTGGCGGTGATGGCAAGT CGGCTGTTTCTGTTACCGGTGGTGTCGACAAACCAAGTAGCTCCTATGCG TCGGCCGTGAAGGGTGACGATCCCGTGGGACCCTCATCCGCTTAGACAAG GTCAATGATCAAAAATGAGAGATGCAGCGATGGTAAACGAAACTCACTCC TCAAAGTAATAAGGACGATGATGCTAAAGTGATTACAATGATGCTTGGCG ACTGGCGGCGGCGATAATGATGATGAATAAACGACGGTGGCTCTGTGGCG TCAAGCGTATTTAAGTAAATAAATAGGTCATAGACTTAATTTAGCTCTTA ACGTTGTCAGCGATGATTCTTCCTCGTTTTGTACCAGCCAATATTCCTTT GTACGGCCTCTCCCTACCCAAAACATTTTTTAGTTTTAAGCCTCCGTTCC TGGCGCTGCCATTGGAATGTGAAATGCTTTTGTCATACACTCCTAAGTTA GTTGTTAATTAATAATTTAGACGGATTTACAGATTCGCTTTGATATTTGA GTTGCCAGCTTTTTATACAAAATAAACGGCCTTTGCAAATTAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg18.e | 2632 | Atg18.e | 145..2236 | 1..2092 | 10460 | 100 | Plus |
Atg18-RA | 2371 | Atg18-RA | 145..2236 | 1..2092 | 10460 | 100 | Plus |
Atg18.c | 2129 | Atg18.c | 230..2129 | 192..2091 | 9500 | 100 | Plus |
Atg18.c | 2129 | Atg18.c | 1..193 | 1..193 | 965 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8181796..8182676 | 1217..2091 | 4205 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 8179776..8180543 | 292..1059 | 3825 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 8178964..8179157 | 1..194 | 970 | 100 | Plus |
chr3L | 24539361 | chr3L | 8181250..8181409 | 1059..1218 | 785 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 8179440..8179539 | 192..291 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 8189840..8190715 | 1217..2092 | 4380 | 100 | Plus |
3L | 28110227 | 3L | 8187813..8188580 | 292..1059 | 3840 | 100 | Plus |
3L | 28110227 | 3L | 8187001..8187194 | 1..194 | 970 | 100 | Plus |
3L | 28110227 | 3L | 8189286..8189445 | 1059..1218 | 800 | 100 | Plus |
3L | 28110227 | 3L | 8187477..8187576 | 192..291 | 500 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8182940..8183815 | 1217..2092 | 4380 | 100 | Plus |
3L | 28103327 | 3L | 8180913..8181680 | 292..1059 | 3840 | 100 | Plus |
3L | 28103327 | 3L | 8180101..8180294 | 1..194 | 970 | 100 | Plus |
3L | 28103327 | 3L | 8182386..8182545 | 1059..1218 | 800 | 100 | Plus |
3L | 28103327 | 3L | 8180577..8180676 | 192..291 | 500 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8178964..8179156 | 1..193 | 100 | -> | Plus |
chr3L | 8179442..8179539 | 194..291 | 100 | -> | Plus |
chr3L | 8179776..8180543 | 292..1059 | 99 | -> | Plus |
chr3L | 8181251..8181409 | 1060..1218 | 99 | -> | Plus |
chr3L | 8181798..8182676 | 1219..2091 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RC | 1..1134 | 221..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RC | 1..1134 | 221..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RA | 1..1134 | 221..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RC | 1..1134 | 221..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18a-RB | 1..1134 | 221..1354 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RA | 1..2091 | 1..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RA | 1..2091 | 1..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RA | 7..2097 | 1..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18-RA | 1..2091 | 1..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Atg18a-RA | 7..2097 | 1..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8187001..8187193 | 1..193 | 100 | -> | Plus |
3L | 8187479..8187576 | 194..291 | 100 | -> | Plus |
3L | 8187813..8188580 | 292..1059 | 100 | -> | Plus |
3L | 8189287..8189445 | 1060..1218 | 100 | -> | Plus |
3L | 8189842..8190714 | 1219..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8187001..8187193 | 1..193 | 100 | -> | Plus |
3L | 8187479..8187576 | 194..291 | 100 | -> | Plus |
3L | 8187813..8188580 | 292..1059 | 100 | -> | Plus |
3L | 8189287..8189445 | 1060..1218 | 100 | -> | Plus |
3L | 8189842..8190714 | 1219..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8187001..8187193 | 1..193 | 100 | -> | Plus |
3L | 8187479..8187576 | 194..291 | 100 | -> | Plus |
3L | 8187813..8188580 | 292..1059 | 100 | -> | Plus |
3L | 8189287..8189445 | 1060..1218 | 100 | -> | Plus |
3L | 8189842..8190714 | 1219..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8180101..8180293 | 1..193 | 100 | -> | Plus |
arm_3L | 8180579..8180676 | 194..291 | 100 | -> | Plus |
arm_3L | 8180913..8181680 | 292..1059 | 100 | -> | Plus |
arm_3L | 8182387..8182545 | 1060..1218 | 100 | -> | Plus |
arm_3L | 8182942..8183814 | 1219..2091 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8180101..8180293 | 1..193 | 100 | -> | Plus |
3L | 8180579..8180676 | 194..291 | 100 | -> | Plus |
3L | 8180913..8181680 | 292..1059 | 100 | -> | Plus |
3L | 8182387..8182545 | 1060..1218 | 100 | -> | Plus |
3L | 8182942..8183814 | 1219..2091 | 100 | Plus |
Translation from 220 to 1353
> LD38705.hyp MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT VEGAECQLIKRHDLRLEDHYAMDIKGA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg18a-PG | 377 | CG7986-PG | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PC | 377 | CG7986-PC | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PB | 377 | CG7986-PB | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PA | 377 | CG7986-PA | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PE | 447 | CG7986-PE | 1..375 | 1..375 | 1907 | 100 | Plus |
Translation from 220 to 1353
> LD38705.pep MMSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIY HTKSDELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTI LAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSE HCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIAT ASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNT ETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVT DVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPT VEGAECQLIKRHDLRLEDHYAMDIKGA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25099-PA | 433 | GF25099-PA | 1..371 | 1..376 | 1911 | 95.2 | Plus |
Dana\GF15570-PA | 472 | GF15570-PA | 11..374 | 25..368 | 807 | 47 | Plus |
Dana\GF16573-PA | 340 | GF16573-PA | 1..285 | 2..286 | 298 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14476-PA | 435 | GG14476-PA | 1..371 | 1..376 | 1954 | 97.6 | Plus |
Dere\GG21513-PA | 471 | GG21513-PA | 6..380 | 17..374 | 822 | 44.8 | Plus |
Dere\GG14096-PA | 340 | GG14096-PA | 1..285 | 2..286 | 296 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15493-PA | 437 | GH15493-PA | 1..369 | 1..376 | 1835 | 91.8 | Plus |
Dgri\GH11033-PA | 479 | GH11033-PA | 3..377 | 24..368 | 822 | 44.6 | Plus |
Dgri\GH19377-PA | 340 | GH19377-PA | 1..285 | 2..286 | 302 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Atg18a-PG | 377 | CG7986-PG | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PC | 377 | CG7986-PC | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PB | 377 | CG7986-PB | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PA | 377 | CG7986-PA | 1..377 | 1..377 | 1917 | 100 | Plus |
Atg18a-PE | 447 | CG7986-PE | 1..375 | 1..375 | 1907 | 100 | Plus |
Atg18a-PF | 372 | CG7986-PF | 1..372 | 1..377 | 1873 | 98.7 | Plus |
Atg18a-PD | 435 | CG7986-PD | 1..371 | 1..376 | 1869 | 98.7 | Plus |
Atg18b-PB | 471 | CG8678-PB | 6..380 | 17..374 | 794 | 45.6 | Plus |
Atg18b-PA | 471 | CG8678-PA | 6..380 | 17..374 | 794 | 45.6 | Plus |
CG11975-PB | 340 | CG11975-PB | 1..285 | 2..286 | 291 | 29.8 | Plus |
CG11975-PA | 340 | CG11975-PA | 1..285 | 2..286 | 291 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16769-PA | 431 | GI16769-PA | 1..369 | 1..376 | 1783 | 92.8 | Plus |
Dmoj\GI17552-PA | 462 | GI17552-PA | 3..369 | 24..368 | 828 | 45.3 | Plus |
Dmoj\GI22579-PA | 340 | GI22579-PA | 1..285 | 2..286 | 307 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22534-PA | 444 | GL22534-PA | 1..369 | 1..376 | 1877 | 94.7 | Plus |
Dper\GL26366-PA | 505 | GL26366-PA | 56..412 | 32..368 | 779 | 45.1 | Plus |
Dper\GL12110-PA | 340 | GL12110-PA | 1..285 | 2..286 | 301 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20742-PA | 442 | GA20742-PA | 1..369 | 1..376 | 1880 | 94.7 | Plus |
Dpse\GA21256-PA | 470 | GA21256-PA | 6..377 | 17..368 | 819 | 45.4 | Plus |
Dpse\GA11305-PA | 340 | GA11305-PA | 1..285 | 2..286 | 301 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25025-PA | 435 | GM25025-PA | 1..371 | 1..376 | 1960 | 97.9 | Plus |
Dsec\GM23265-PA | 471 | GM23265-PA | 6..380 | 17..374 | 827 | 45.3 | Plus |
Dsec\GM23775-PA | 340 | GM23775-PA | 1..285 | 2..286 | 296 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14059-PA | 435 | GD14059-PA | 1..371 | 1..376 | 1967 | 98.4 | Plus |
Dsim\GD21643-PA | 549 | GD21643-PA | 92..458 | 25..374 | 794 | 44.7 | Plus |
Dsim\GD18585-PA | 340 | GD18585-PA | 1..285 | 2..286 | 296 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12513-PA | 443 | GJ12513-PA | 1..369 | 1..376 | 1844 | 93.1 | Plus |
Dvir\GJ15537-PA | 470 | GJ15537-PA | 6..374 | 25..368 | 828 | 45.9 | Plus |
Dvir\GJ10301-PA | 340 | GJ10301-PA | 1..285 | 2..286 | 307 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11999-PA | 451 | GK11999-PA | 1..369 | 1..376 | 1889 | 94.7 | Plus |
Dwil\GK14682-PA | 474 | GK14682-PA | 1..378 | 23..368 | 763 | 42.7 | Plus |
Dwil\GK11674-PA | 340 | GK11674-PA | 1..285 | 2..286 | 305 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21663-PA | 435 | GE21663-PA | 1..371 | 1..376 | 1964 | 98.1 | Plus |
Dyak\GE12992-PA | 471 | GE12992-PA | 6..380 | 17..374 | 831 | 45.3 | Plus |
Dyak\GE25918-PA | 340 | GE25918-PA | 1..285 | 2..286 | 296 | 29.8 | Plus |