BDGP Sequence Production Resources |
Search the DGRC for LD38710
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 387 |
Well: | 10 |
Vector: | pOT2 |
Associated Gene/Transcript | CG5924-RA |
Protein status: | LD38710.pep: validated not full length |
Preliminary Size: | 2118 |
Sequenced Size: | 1956 |
Gene | Date | Evidence |
---|---|---|
CG5924 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5924 | 2002-05-01 | Blastp of sequenced clone |
CG5924 | 2008-04-29 | Release 5.5 accounting |
CG5924 | 2008-08-15 | Release 5.9 accounting |
CG5924 | 2008-12-18 | 5.12 accounting |
CG5924 | 2011-03-01 | Transcript Validation |
1956 bp (1956 high quality bases) assembled on 2002-05-01
GenBank Submission: AY102692
> LD38710.complete AGACGCGCCGGTTTAATCAAACCGCTGTTGCGTATAAATAACGAAAAACA ACGTGTTTGGAGAAAAAACTACGCTACCCAAGTGGTTTCCGGCTTGGAGG AGTGCTCACTAGACCCCAAGGAGTATGTGGACTTCAAGCGGCAGCTGCGG CAGCTCAACTTGCCCCACAAAGACGGACACACGTGCTTGCAGCTGGAGTG TCGCCTCTGCGATCGCAATAGGCAGCCGGTGACAAACGCCCAAAAGGGCA CCGATCATGGGCTGCTGGCTTACGTAAACAAGCGGACGGGAGCCTTTATC TGCCCCAATTGCGACGTAAAAACCTCACTGACCAGCGCTTTATTATCCTA TCAGTTGCCCAAGCCGGTTGGCTATAAGCAACCGCTGCAGAGGCAGCCGG TCTATGAATCCCGATTTCCCCACCTGGCCGTGGTTACTCCCGAGGCCTGT GCAGCTTTGGGAATCAAGGGCTTGAAGGAGGACCAACTAAATGCCATAGG AGCACAGTGGGAGCCGCAGCAACAGCTGCTCCACTTTAAGTTACGCAATG CCGCGCAAGTGGAGGTTGGCGAAAAGGTGTTATATCTGGGCGATCGACGG GAGGAGATCTTCCAGAGCAGCTCCAGCTCCGGGCTGCTGATTCACGGTGC GATGAACAAAACCAAAGCGGTTCTAGTCAGCAATCTAATTGACTTTATTG TCCTTGCCACACAGAACATTGAAACGCATTGCGTTGTATGCCTGCCCTAC GAACTGAAGACTCTACCACAAGAGTGTCTGCCCGCCTTGGAACGCTTCAA AGAGCTCATCTTTTGGTTGCACTACGATGCCAGTCACAGCTGGGATGCAG CTAGAGCTTTTGCGTTAAAGTTGGACGAAAGGCGATGCCTGTTAATCCGA CCTACTGAGACGGAACCTGCGCCACATTTGGCTCTGCGCCGACGACTCAA TCTGCGCCACATCCTGGCCAAAGCGACACCGGTGCAGCACAAGGCCATCA CAACATTCGGAGCAATGCGAAATGACATTCTCAGCGAGTTGCAAAACATC GAGAAAGTCAATGGAGTAAAGTGGAAGCGCTTTCCAGTACTGAATAAGCT GCTCAAAGGCCATCGGAGGGGAGAGTTGACAATCCTCACAGGACCCACGG GTAGTGGAAAGACAACCTTTATGAGCGAGTACTCTCTGGATCTGGCCATG CAGGGCGTAAACACGCTGTGGGGCTCTTTTGAGATCCGAAACACCCGGCT GGCGGCCACCTTGCTTCGCCAGTATGTGGGCTACCCGTTGGACGACCGGT TGCATGAGTTTAACCACTGGGCAGCGGAGTTTGAGCGTTTGCCGCTATAC TTTATGACCTTCCACGGACAGCAGCCCCTTAAGCCGGTTCTGGAAGCCAT CGAGCATGCGTCGTATGTGCACGATGTGATGCACGTGATCATTGACAATC TGCAATTTATGATGGGCGTGTCCACATTTCGAGGCGACAAGTTCTTTGAA CAGGACTCTATTATAGCTGCCTTTCGCTCCTTTGCCACCAAGCACAATGT ACACGTGACACTCGTAATGCATCCGCGCAAGGAGCGGCAGGAGGACGAGC TGACCACCAGCTCGGTTTTCGGCACAGCAAAGGCCACCCAAGAAGCGGAC AACGTGTTGATCATTCAAGACAAGAGGCTGACTTCTGTGCGGGGCAAGAA GTATCTCCAAATTGCCAAGAATCGTTATTCCGGCGACCTGGGCATCATGC CACTGGAATTCGACAAAGACGGCTTGAGCTACTCAACCCAGATCCAAAAT GCCAAGCGAAAACGGGAAAAGACGCCATCCGAGAACTGATTAGTAAGGCA TTTGTTGTACTATAGGTTATAATTATTCTGTTGTCTATGGTTAGTTTAGT CTTAAGTGCATCCTTTGATAAACTGCATCACGTTGAAAAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9890178..9891385 | 1935..728 | 5890 | 99.2 | Minus |
chr2L | 23010047 | chr2L | 9891555..9891993 | 727..289 | 2165 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 9892050..9892339 | 290..1 | 1420 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9891254..9892462 | 1936..728 | 6045 | 100 | Minus |
2L | 23513712 | 2L | 9892632..9893070 | 727..289 | 2195 | 100 | Minus |
2L | 23513712 | 2L | 9893127..9893416 | 290..1 | 1450 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9891254..9892462 | 1936..728 | 6045 | 100 | Minus |
2L | 23513712 | 2L | 9892632..9893070 | 727..289 | 2195 | 100 | Minus |
2L | 23513712 | 2L | 9893127..9893416 | 290..1 | 1450 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9892051..9892339 | 1..289 | 99 | Minus | |
chr2L | 9890178..9891385 | 728..1935 | 99 | <- | Minus |
chr2L | 9891555..9891992 | 290..727 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1842 | 1..1839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1842 | 1..1839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtDNA-helicase-RA | 4..1842 | 1..1839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1842 | 1..1839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtDNA-helicase-RA | 4..1842 | 1..1839 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1938 | 1..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1938 | 1..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtDNA-helicase-RA | 31..1965 | 1..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5924-RA | 4..1938 | 1..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtDNA-helicase-RA | 31..1965 | 1..1935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9891255..9892462 | 728..1935 | 100 | <- | Minus |
2L | 9892632..9893069 | 290..727 | 100 | <- | Minus |
2L | 9893128..9893416 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9891255..9892462 | 728..1935 | 100 | <- | Minus |
2L | 9892632..9893069 | 290..727 | 100 | <- | Minus |
2L | 9893128..9893416 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9891255..9892462 | 728..1935 | 100 | <- | Minus |
2L | 9892632..9893069 | 290..727 | 100 | <- | Minus |
2L | 9893128..9893416 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9891255..9892462 | 728..1935 | 100 | <- | Minus |
arm_2L | 9892632..9893069 | 290..727 | 100 | <- | Minus |
arm_2L | 9893128..9893416 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9891255..9892462 | 728..1935 | 100 | <- | Minus |
2L | 9892632..9893069 | 290..727 | 100 | <- | Minus |
2L | 9893128..9893416 | 1..289 | 100 | Minus |
Translation from 0 to 1838
> LD38710.pep RRAGLIKPLLRINNEKQRVWRKNYATQVVSGLEECSLDPKEYVDFKRQLR QLNLPHKDGHTCLQLECRLCDRNRQPVTNAQKGTDHGLLAYVNKRTGAFI CPNCDVKTSLTSALLSYQLPKPVGYKQPLQRQPVYESRFPHLAVVTPEAC AALGIKGLKEDQLNAIGAQWEPQQQLLHFKLRNAAQVEVGEKVLYLGDRR EEIFQSSSSSGLLIHGAMNKTKAVLVSNLIDFIVLATQNIETHCVVCLPY ELKTLPQECLPALERFKELIFWLHYDASHSWDAARAFALKLDERRCLLIR PTETEPAPHLALRRRLNLRHILAKATPVQHKAITTFGAMRNDILSELQNI EKVNGVKWKRFPVLNKLLKGHRRGELTILTGPTGSGKTTFMSEYSLDLAM QGVNTLWGSFEIRNTRLAATLLRQYVGYPLDDRLHEFNHWAAEFERLPLY FMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGVSTFRGDKFFE QDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTSSVFGTAKATQEAD NVLIIQDKRLTSVRGKKYLQIAKNRYSGDLGIMPLEFDKDGLSYSTQIQN AKRKREKTPSEN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15234-PA | 614 | GF15234-PA | 2..606 | 1..607 | 2846 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24002-PA | 613 | GG24002-PA | 2..613 | 1..612 | 3101 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10441-PA | 616 | GH10441-PA | 2..608 | 1..607 | 2595 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtDNA-helicase-PA | 613 | CG5924-PA | 2..613 | 1..612 | 3198 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24377-PA | 620 | GI24377-PA | 2..612 | 1..607 | 2542 | 77 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20553-PA | 132 | GL20553-PA | 1..124 | 85..208 | 505 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19233-PA | 614 | GA19233-PA | 2..613 | 1..611 | 2797 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12211-PA | 613 | GM12211-PA | 2..613 | 1..612 | 3253 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22331-PA | 613 | GD22331-PA | 2..613 | 1..612 | 3256 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21636-PA | 641 | GJ21636-PA | 33..633 | 1..607 | 2571 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23862-PA | 618 | GK23862-PA | 2..614 | 1..607 | 2505 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10270-PA | 613 | GE10270-PA | 2..613 | 1..612 | 3188 | 96.4 | Plus |
Translation from 0 to 1838
> LD38710.hyp RRAGLIKPLLRINNEKQRVWRKNYATQVVSGLEECSLDPKEYVDFKRQLR QLNLPHKDGHTCLQLECRLCDRNRQPVTNAQKGTDHGLLAYVNKRTGAFI CPNCDVKTSLTSALLSYQLPKPVGYKQPLQRQPVYESRFPHLAVVTPEAC AALGIKGLKEDQLNAIGAQWEPQQQLLHFKLRNAAQVEVGEKVLYLGDRR EEIFQSSSSSGLLIHGAMNKTKAVLVSNLIDFIVLATQNIETHCVVCLPY ELKTLPQECLPALERFKELIFWLHYDASHSWDAARAFALKLDERRCLLIR PTETEPAPHLALRRRLNLRHILAKATPVQHKAITTFGAMRNDILSELQNI EKVNGVKWKRFPVLNKLLKGHRRGELTILTGPTGSGKTTFMSEYSLDLAM QGVNTLWGSFEIRNTRLAATLLRQYVGYPLDDRLHEFNHWAAEFERLPLY FMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGVSTFRGDKFFE QDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTSSVFGTAKATQEAD NVLIIQDKRLTSVRGKKYLQIAKNRYSGDLGIMPLEFDKDGLSYSTQIQN AKRKREKTPSEN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtDNA-helicase-PA | 613 | CG5924-PA | 2..613 | 1..612 | 3198 | 100 | Plus |