Clone LD38710 Report

Search the DGRC for LD38710

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:387
Well:10
Vector:pOT2
Associated Gene/TranscriptCG5924-RA
Protein status:LD38710.pep: validated not full length
Preliminary Size:2118
Sequenced Size:1956

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5924 2002-01-01 Sim4 clustering to Release 2
CG5924 2002-05-01 Blastp of sequenced clone
CG5924 2008-04-29 Release 5.5 accounting
CG5924 2008-08-15 Release 5.9 accounting
CG5924 2008-12-18 5.12 accounting
CG5924 2011-03-01 Transcript Validation

Clone Sequence Records

LD38710.complete Sequence

1956 bp (1956 high quality bases) assembled on 2002-05-01

GenBank Submission: AY102692

> LD38710.complete
AGACGCGCCGGTTTAATCAAACCGCTGTTGCGTATAAATAACGAAAAACA
ACGTGTTTGGAGAAAAAACTACGCTACCCAAGTGGTTTCCGGCTTGGAGG
AGTGCTCACTAGACCCCAAGGAGTATGTGGACTTCAAGCGGCAGCTGCGG
CAGCTCAACTTGCCCCACAAAGACGGACACACGTGCTTGCAGCTGGAGTG
TCGCCTCTGCGATCGCAATAGGCAGCCGGTGACAAACGCCCAAAAGGGCA
CCGATCATGGGCTGCTGGCTTACGTAAACAAGCGGACGGGAGCCTTTATC
TGCCCCAATTGCGACGTAAAAACCTCACTGACCAGCGCTTTATTATCCTA
TCAGTTGCCCAAGCCGGTTGGCTATAAGCAACCGCTGCAGAGGCAGCCGG
TCTATGAATCCCGATTTCCCCACCTGGCCGTGGTTACTCCCGAGGCCTGT
GCAGCTTTGGGAATCAAGGGCTTGAAGGAGGACCAACTAAATGCCATAGG
AGCACAGTGGGAGCCGCAGCAACAGCTGCTCCACTTTAAGTTACGCAATG
CCGCGCAAGTGGAGGTTGGCGAAAAGGTGTTATATCTGGGCGATCGACGG
GAGGAGATCTTCCAGAGCAGCTCCAGCTCCGGGCTGCTGATTCACGGTGC
GATGAACAAAACCAAAGCGGTTCTAGTCAGCAATCTAATTGACTTTATTG
TCCTTGCCACACAGAACATTGAAACGCATTGCGTTGTATGCCTGCCCTAC
GAACTGAAGACTCTACCACAAGAGTGTCTGCCCGCCTTGGAACGCTTCAA
AGAGCTCATCTTTTGGTTGCACTACGATGCCAGTCACAGCTGGGATGCAG
CTAGAGCTTTTGCGTTAAAGTTGGACGAAAGGCGATGCCTGTTAATCCGA
CCTACTGAGACGGAACCTGCGCCACATTTGGCTCTGCGCCGACGACTCAA
TCTGCGCCACATCCTGGCCAAAGCGACACCGGTGCAGCACAAGGCCATCA
CAACATTCGGAGCAATGCGAAATGACATTCTCAGCGAGTTGCAAAACATC
GAGAAAGTCAATGGAGTAAAGTGGAAGCGCTTTCCAGTACTGAATAAGCT
GCTCAAAGGCCATCGGAGGGGAGAGTTGACAATCCTCACAGGACCCACGG
GTAGTGGAAAGACAACCTTTATGAGCGAGTACTCTCTGGATCTGGCCATG
CAGGGCGTAAACACGCTGTGGGGCTCTTTTGAGATCCGAAACACCCGGCT
GGCGGCCACCTTGCTTCGCCAGTATGTGGGCTACCCGTTGGACGACCGGT
TGCATGAGTTTAACCACTGGGCAGCGGAGTTTGAGCGTTTGCCGCTATAC
TTTATGACCTTCCACGGACAGCAGCCCCTTAAGCCGGTTCTGGAAGCCAT
CGAGCATGCGTCGTATGTGCACGATGTGATGCACGTGATCATTGACAATC
TGCAATTTATGATGGGCGTGTCCACATTTCGAGGCGACAAGTTCTTTGAA
CAGGACTCTATTATAGCTGCCTTTCGCTCCTTTGCCACCAAGCACAATGT
ACACGTGACACTCGTAATGCATCCGCGCAAGGAGCGGCAGGAGGACGAGC
TGACCACCAGCTCGGTTTTCGGCACAGCAAAGGCCACCCAAGAAGCGGAC
AACGTGTTGATCATTCAAGACAAGAGGCTGACTTCTGTGCGGGGCAAGAA
GTATCTCCAAATTGCCAAGAATCGTTATTCCGGCGACCTGGGCATCATGC
CACTGGAATTCGACAAAGACGGCTTGAGCTACTCAACCCAGATCCAAAAT
GCCAAGCGAAAACGGGAAAAGACGCCATCCGAGAACTGATTAGTAAGGCA
TTTGTTGTACTATAGGTTATAATTATTCTGTTGTCTATGGTTAGTTTAGT
CTTAAGTGCATCCTTTGATAAACTGCATCACGTTGAAAAAAAAAAAAAAA
AAAAAA

LD38710.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5924-RA 2058 CG5924-RA 90..2025 1..1936 9680 100 Plus
CG4537-RB 433 CG4537-RB 311..433 1936..1814 615 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9890178..9891385 1935..728 5890 99.2 Minus
chr2L 23010047 chr2L 9891555..9891993 727..289 2165 99.5 Minus
chr2L 23010047 chr2L 9892050..9892339 290..1 1420 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9891254..9892462 1936..728 6045 100 Minus
2L 23513712 2L 9892632..9893070 727..289 2195 100 Minus
2L 23513712 2L 9893127..9893416 290..1 1450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9891254..9892462 1936..728 6045 100 Minus
2L 23513712 2L 9892632..9893070 727..289 2195 100 Minus
2L 23513712 2L 9893127..9893416 290..1 1450 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:29:21 has no hits.

LD38710.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:14 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9892051..9892339 1..289 99   Minus
chr2L 9890178..9891385 728..1935 99 <- Minus
chr2L 9891555..9891992 290..727 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:01 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1842 1..1839 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:41 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1842 1..1839 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:59 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
mtDNA-helicase-RA 4..1842 1..1839 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:13 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1842 1..1839 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:43 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
mtDNA-helicase-RA 4..1842 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:09 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1938 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:40 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1938 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:59 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
mtDNA-helicase-RA 31..1965 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:13 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
CG5924-RA 4..1938 1..1935 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:43 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
mtDNA-helicase-RA 31..1965 1..1935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:14 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9891255..9892462 728..1935 100 <- Minus
2L 9892632..9893069 290..727 100 <- Minus
2L 9893128..9893416 1..289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:14 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9891255..9892462 728..1935 100 <- Minus
2L 9892632..9893069 290..727 100 <- Minus
2L 9893128..9893416 1..289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:14 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9891255..9892462 728..1935 100 <- Minus
2L 9892632..9893069 290..727 100 <- Minus
2L 9893128..9893416 1..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:59 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9891255..9892462 728..1935 100 <- Minus
arm_2L 9892632..9893069 290..727 100 <- Minus
arm_2L 9893128..9893416 1..289 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:44 Download gff for LD38710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9891255..9892462 728..1935 100 <- Minus
2L 9892632..9893069 290..727 100 <- Minus
2L 9893128..9893416 1..289 100   Minus

LD38710.pep Sequence

Translation from 0 to 1838

> LD38710.pep
RRAGLIKPLLRINNEKQRVWRKNYATQVVSGLEECSLDPKEYVDFKRQLR
QLNLPHKDGHTCLQLECRLCDRNRQPVTNAQKGTDHGLLAYVNKRTGAFI
CPNCDVKTSLTSALLSYQLPKPVGYKQPLQRQPVYESRFPHLAVVTPEAC
AALGIKGLKEDQLNAIGAQWEPQQQLLHFKLRNAAQVEVGEKVLYLGDRR
EEIFQSSSSSGLLIHGAMNKTKAVLVSNLIDFIVLATQNIETHCVVCLPY
ELKTLPQECLPALERFKELIFWLHYDASHSWDAARAFALKLDERRCLLIR
PTETEPAPHLALRRRLNLRHILAKATPVQHKAITTFGAMRNDILSELQNI
EKVNGVKWKRFPVLNKLLKGHRRGELTILTGPTGSGKTTFMSEYSLDLAM
QGVNTLWGSFEIRNTRLAATLLRQYVGYPLDDRLHEFNHWAAEFERLPLY
FMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGVSTFRGDKFFE
QDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTSSVFGTAKATQEAD
NVLIIQDKRLTSVRGKKYLQIAKNRYSGDLGIMPLEFDKDGLSYSTQIQN
AKRKREKTPSEN*

LD38710.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15234-PA 614 GF15234-PA 2..606 1..607 2846 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24002-PA 613 GG24002-PA 2..613 1..612 3101 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10441-PA 616 GH10441-PA 2..608 1..607 2595 78.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
mtDNA-helicase-PA 613 CG5924-PA 2..613 1..612 3198 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24377-PA 620 GI24377-PA 2..612 1..607 2542 77 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20553-PA 132 GL20553-PA 1..124 85..208 505 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19233-PA 614 GA19233-PA 2..613 1..611 2797 85.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12211-PA 613 GM12211-PA 2..613 1..612 3253 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22331-PA 613 GD22331-PA 2..613 1..612 3256 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21636-PA 641 GJ21636-PA 33..633 1..607 2571 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23862-PA 618 GK23862-PA 2..614 1..607 2505 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10270-PA 613 GE10270-PA 2..613 1..612 3188 96.4 Plus

LD38710.hyp Sequence

Translation from 0 to 1838

> LD38710.hyp
RRAGLIKPLLRINNEKQRVWRKNYATQVVSGLEECSLDPKEYVDFKRQLR
QLNLPHKDGHTCLQLECRLCDRNRQPVTNAQKGTDHGLLAYVNKRTGAFI
CPNCDVKTSLTSALLSYQLPKPVGYKQPLQRQPVYESRFPHLAVVTPEAC
AALGIKGLKEDQLNAIGAQWEPQQQLLHFKLRNAAQVEVGEKVLYLGDRR
EEIFQSSSSSGLLIHGAMNKTKAVLVSNLIDFIVLATQNIETHCVVCLPY
ELKTLPQECLPALERFKELIFWLHYDASHSWDAARAFALKLDERRCLLIR
PTETEPAPHLALRRRLNLRHILAKATPVQHKAITTFGAMRNDILSELQNI
EKVNGVKWKRFPVLNKLLKGHRRGELTILTGPTGSGKTTFMSEYSLDLAM
QGVNTLWGSFEIRNTRLAATLLRQYVGYPLDDRLHEFNHWAAEFERLPLY
FMTFHGQQPLKPVLEAIEHASYVHDVMHVIIDNLQFMMGVSTFRGDKFFE
QDSIIAAFRSFATKHNVHVTLVMHPRKERQEDELTTSSVFGTAKATQEAD
NVLIIQDKRLTSVRGKKYLQIAKNRYSGDLGIMPLEFDKDGLSYSTQIQN
AKRKREKTPSEN*

LD38710.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
mtDNA-helicase-PA 613 CG5924-PA 2..613 1..612 3198 100 Plus