Clone LD38718 Report

Search the DGRC for LD38718

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:387
Well:18
Vector:pOT2
Associated Gene/TranscriptCdk1-RA
Protein status:LD38718.pep: gold
Preliminary Size:1239
Sequenced Size:1051

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5363 2001-01-01 Release 2 assignment
CG5363 2001-10-10 Blastp of sequenced clone
CG5363 2003-01-01 Sim4 clustering to Release 3
cdc2 2008-04-29 Release 5.5 accounting
cdc2 2008-08-15 Release 5.9 accounting
cdc2 2008-12-18 5.12 accounting

Clone Sequence Records

LD38718.complete Sequence

1051 bp (1051 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061450

> LD38718.complete
AAGTCGGTGGCTTGCAAAGAAATAGCTTAATAAATTATGGAGGATTTTGA
GAAAATTGAGAAGATTGGCGAGGGCACATATGGCGTGGTGTATAAGGGTC
GCAACCGCCTGACGGGCCAAATTGTGGCAATGAAGAAAATCCGCTTGGAG
TCCGACGACGAAGGCGTTCCATCAACCGCGATCAGAGAAATTTCGTTGCT
TAAGGAGTTGAAACATGAAAACATTGTCTGTTTGGAGGATGTTTTGATGG
AGGAGAACCGCATATACTTGATCTTTGAATTCCTATCGATGGACCTCAAG
AAATACATGGATTCGCTGCCAGTTGATAAGCACATGGAGAGTGAATTGGT
CCGTAGCTATTTGTACCAAATAACTAGCGCCATTCTTTTCTGCCATCGTC
GGCGAGTACTTCACCGTGATCTTAAGCCGCAGAACTTACTAATCGACAAG
AGTGGCCTCATAAAAGTCGCCGACTTTGGACTTGGCCGATCCTTTGGCAT
TCCGGTGCGCATTTATACGCACGAGATTGTTACCTTGTGGTACAGAGCGC
CGGAGGTGCTACTGGGTTCACCCCGGTATTCCTGTCCCGTCGATATCTGG
TCCATTGGATGCATATTCGCGGAGATGGCAACGAGAAAGCCGCTATTCCA
GGGTGACTCGGAAATTGACCAGTTGTTTAGAATGTTTAGAATTCTGAAAA
CACCTACCGAAGACATTTGGCCGGGCGTTACTTCGCTACCCGACTATAAG
AACACGTTCCCCTGCTGGTCCACGAACCAATTGACCAATCAGTTAAAGAA
TCTCGATGCGAATGGTATTGATCTCATACAAAAGATGTTAATCTACGATC
CAGTTCATCGCATTTCCGCCAAGGACATTTTGGAGCATCCCTATTTCAAT
GGTTTTCAATCGGGCTTAGTTCGAAATTAACGTTCGGTATTCTCGTTTGA
CTTTAACTAAGAATTTTAAAACAAGAGATCTTGGTATCTAATCTAAAGCA
AAATAGCCGTAAATAAAACTAAGGGTGTAAAACAAAAAAAAAAAAAAAAA
A

LD38718.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
cdc2-RA 1267 cdc2-RA 158..1192 1..1035 5175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10384000..10384506 689..183 2535 100 Minus
chr2L 23010047 chr2L 10383599..10383944 1033..688 1730 100 Minus
chr2L 23010047 chr2L 10384889..10385073 185..1 895 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 689..183 2535 100 Minus
2L 23513712 2L 10384737..10385084 1035..688 1740 100 Minus
2L 23513712 2L 10386029..10386213 185..1 925 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10385140..10385646 689..183 2535 100 Minus
2L 23513712 2L 10384737..10385084 1035..688 1740 100 Minus
2L 23513712 2L 10386029..10386213 185..1 925 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:43:03 has no hits.

LD38718.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:43:56 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10383599..10383942 690..1033 100 <- Minus
chr2L 10384000..10384503 186..689 100 <- Minus
chr2L 10384889..10385073 1..185 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:02 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 37..930 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:55:59 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 37..930 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:00:37 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 37..930 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:25:09 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 1..894 37..930 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:39 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 1..894 37..930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:41:54 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 51..1083 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:55:59 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 51..1083 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:37 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 50..1082 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:25:09 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
cdc2-RA 51..1083 1..1033 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:39 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk1-RA 50..1082 1..1033 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:56 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10386029..10386213 1..185 100   Minus
2L 10384739..10385082 690..1033 100 <- Minus
2L 10385140..10385643 186..689 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:56 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10386029..10386213 1..185 100   Minus
2L 10384739..10385082 690..1033 100 <- Minus
2L 10385140..10385643 186..689 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:56 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10386029..10386213 1..185 100   Minus
2L 10384739..10385082 690..1033 100 <- Minus
2L 10385140..10385643 186..689 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:37 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10384739..10385082 690..1033 100 <- Minus
arm_2L 10385140..10385643 186..689 100 <- Minus
arm_2L 10386029..10386213 1..185 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:20 Download gff for LD38718.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10384739..10385082 690..1033 100 <- Minus
2L 10385140..10385643 186..689 100 <- Minus
2L 10386029..10386213 1..185 100   Minus

LD38718.pep Sequence

Translation from 36 to 929

> LD38718.pep
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRN*

LD38718.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14103-PA 297 GF14103-PA 1..297 1..297 1534 96 Plus
Dana\GF16690-PA 314 GF16690-PA 5..291 1..291 927 59.5 Plus
Dana\GF22626-PA 294 GF22626-PA 1..291 1..292 818 52.5 Plus
Dana\GF24214-PA 526 GF24214-PA 206..493 1..287 696 47.1 Plus
Dana\GF10359-PA 942 GF10359-PA 545..841 1..287 643 42.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23938-PA 297 GG23938-PA 1..297 1..297 1576 99.3 Plus
Dere\GG24088-PA 314 GG24088-PA 5..291 1..291 894 59.5 Plus
Dere\GG22344-PA 294 GG22344-PA 1..291 1..292 821 52.9 Plus
Dere\GG15148-PA 521 GG15148-PA 201..488 1..287 698 47.1 Plus
Dere\GG16135-PA 968 GG16135-PA 571..867 1..287 641 42.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13856-PA 298 GH13856-PA 1..295 1..295 1484 93.2 Plus
Dgri\GH17244-PA 314 GH17244-PA 5..291 1..291 908 57.7 Plus
Dgri\GH20285-PA 294 GH20285-PA 1..291 1..292 816 52.5 Plus
Dgri\GH16418-PA 524 GH16418-PA 204..491 1..287 685 46.7 Plus
Dgri\GH24366-PA 353 GH24366-PA 12..296 4..288 602 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-PA 297 CG5363-PA 1..297 1..297 1557 100 Plus
Cdk2-PC 314 CG10498-PC 5..291 1..291 913 59.5 Plus
Cdk2-PB 314 CG10498-PB 5..291 1..291 913 59.5 Plus
Cdk2-PA 314 CG10498-PA 5..291 1..291 913 59.5 Plus
Cdk5-PA 294 CG8203-PA 1..291 1..292 799 52.6 Plus
Eip63E-PH 501 CG10579-PH 182..468 2..287 680 47.2 Plus
Eip63E-PM 509 CG10579-PM 190..476 2..287 680 47.2 Plus
Eip63E-PC 509 CG10579-PC 190..476 2..287 680 47.2 Plus
Eip63E-PB 509 CG10579-PB 190..476 2..287 680 47.2 Plus
Eip63E-PA 509 CG10579-PA 190..476 2..287 680 47.2 Plus
Eip63E-PJ 509 CG10579-PJ 190..476 2..287 680 47.2 Plus
Eip63E-PF 509 CG10579-PF 190..476 2..287 680 47.2 Plus
Eip63E-PL 522 CG10579-PL 203..489 2..287 680 47.2 Plus
Eip63E-PE 522 CG10579-PE 203..489 2..287 680 47.2 Plus
Eip63E-PD 522 CG10579-PD 203..489 2..287 680 47.2 Plus
Eip63E-PK 522 CG10579-PK 203..489 2..287 680 47.2 Plus
Eip63E-PI 522 CG10579-PI 203..489 2..287 680 47.2 Plus
Eip63E-PG 522 CG10579-PG 203..489 2..287 680 47.2 Plus
Eip63E-PN 538 CG10579-PN 203..489 2..287 680 47.2 Plus
Pitslre-PG 778 CG4268-PG 381..677 1..287 636 42.6 Plus
Pitslre-PF 778 CG4268-PF 381..677 1..287 636 42.6 Plus
Pitslre-PE 778 CG4268-PE 381..677 1..287 636 42.6 Plus
Pitslre-PC 952 CG4268-PC 555..851 1..287 636 42.6 Plus
Pitslre-PA 952 CG4268-PA 555..851 1..287 636 42.6 Plus
Cdk7-PA 353 CG3319-PA 10..295 2..287 592 40.5 Plus
Cdc2rk-PA 387 CG1362-PA 50..337 1..287 583 40.7 Plus
Cdk12-PC 1157 CG7597-PC 804..1097 4..286 575 40.1 Plus
Cdk12-PA 1157 CG7597-PA 804..1097 4..286 575 40.1 Plus
Cdk12-PB 1157 CG7597-PB 804..1097 4..286 575 40.1 Plus
Cdk9-PA 404 CG5179-PA 50..347 4..287 555 39.3 Plus
Cdk4-PE 317 CG5072-PE 25..312 3..287 540 42.3 Plus
Cdk4-PD 317 CG5072-PD 25..312 3..287 540 42.3 Plus
Cdk4-PB 317 CG5072-PB 25..312 3..287 540 42.3 Plus
Cdk4-PA 317 CG5072-PA 25..312 3..287 540 42.3 Plus
Cdk4-PC 317 CG5072-PC 25..312 3..287 540 42.3 Plus
CG42366-PB 703 CG42366-PB 1..288 1..291 527 38.1 Plus
CG42366-PA 706 CG31711-PA 1..288 1..291 527 38.1 Plus
CG7236-PD 412 CG7236-PD 21..312 1..290 507 36.1 Plus
CG7236-PE 421 CG7236-PE 30..321 1..290 507 36.1 Plus
CG7236-PB 435 CG7236-PB 44..335 1..290 507 36.1 Plus
CG7236-PC 438 CG7236-PC 47..338 1..290 507 36.1 Plus
Erk7-PC 451 CG32703-PC 25..323 4..291 459 36.5 Plus
Erk7-PB 916 CG32703-PB 25..323 4..291 459 36.5 Plus
Erk7-PA 916 CG32703-PA 25..323 4..291 459 36.5 Plus
Cdk8-PA 454 CG10572-PA 26..335 9..287 446 34.4 Plus
rl-PI 376 CG12559-PI 40..329 6..290 443 34.2 Plus
rl-PC 376 CG12559-PC 40..329 6..290 443 34.2 Plus
rl-PD 376 CG12559-PD 40..329 6..290 443 34.2 Plus
rl-PE 376 CG12559-PE 40..329 6..290 443 34.2 Plus
CG6800-PA 302 CG6800-PA 9..288 4..281 436 34.8 Plus
nmo-PC 414 CG7892-PC 38..330 2..288 421 34.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18275-PA 297 GI18275-PA 1..291 1..291 1482 94.2 Plus
Dmoj\GI22478-PA 298 GI22478-PA 1..290 1..288 967 60.3 Plus
Dmoj\GI10591-PA 314 GI10591-PA 7..291 3..291 901 61.2 Plus
Dmoj\GI19456-PA 294 GI19456-PA 1..291 1..292 822 52.9 Plus
Dmoj\GI12497-PA 637 GI12497-PA 317..604 1..287 689 46.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19151-PA 297 GL19151-PA 1..297 1..297 1476 91.6 Plus
Dper\GL27348-PA 314 GL27348-PA 5..291 1..291 899 60.5 Plus
Dper\GL11507-PA 294 GL11507-PA 1..291 1..292 819 52.5 Plus
Dper\GL12811-PA 989 GL12811-PA 585..881 1..287 639 42.6 Plus
Dper\GL15117-PA 316 GL15117-PA 47..312 23..287 602 46.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24058-PA 218 GA24058-PA 1..218 1..218 1090 94.5 Plus
Dpse\GA10356-PA 314 GA10356-PA 5..291 1..291 899 60.5 Plus
Dpse\GA20894-PA 294 GA20894-PA 1..291 1..292 819 52.5 Plus
Dpse\GA10409-PA 525 GA10409-PA 205..492 1..287 681 46.7 Plus
Dpse\GA18070-PA 989 GA18070-PA 585..881 1..287 639 42.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11695-PA 297 GM11695-PA 1..297 1..297 1585 100 Plus
Dsec\GM23132-PA 314 GM23132-PA 5..291 1..291 887 59.5 Plus
Dsec\GM20132-PA 294 GM20132-PA 1..291 1..292 816 52.9 Plus
Dsec\GM14580-PA 521 GM14580-PA 201..488 1..287 698 47.1 Plus
Dsec\GM22318-PA 971 GM22318-PA 574..871 1..288 646 42.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22264-PA 259 GD22264-PA 1..259 1..297 1324 87.2 Plus
Dsim\GD19371-PA 314 GD19371-PA 5..291 1..291 888 59.5 Plus
Dsim\GD25609-PA 294 GD25609-PA 1..291 1..292 816 52.9 Plus
Dsim\GD13773-PA 521 GD13773-PA 201..488 1..287 698 47.1 Plus
Dsim\GD14906-PA 971 GD14906-PA 574..870 1..287 644 42.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15416-PA 298 GJ15416-PA 1..295 1..295 1510 94.9 Plus
Dvir\GJ21207-PA 294 GJ21207-PA 1..292 1..293 817 52.9 Plus
Dvir\GJ12403-PA 521 GJ12403-PA 201..488 1..287 689 46.7 Plus
Dvir\GJ13763-PA 978 GJ13763-PA 580..876 1..287 621 41.9 Plus
Dvir\GJ16576-PA 352 GJ16576-PA 12..296 4..288 605 40.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23499-PA 296 GK23499-PA 1..295 1..295 1471 93.6 Plus
Dwil\GK11570-PA 302 GK11570-PA 1..301 1..294 900 57.1 Plus
Dwil\GK22466-PA 314 GK22466-PA 5..291 1..291 898 57.4 Plus
Dwil\GK21950-PA 294 GK21950-PA 1..291 1..292 829 53.2 Plus
Dwil\GK20517-PA 584 GK20517-PA 264..551 1..287 687 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26009-PA 297 GE26009-PA 1..297 1..297 1585 100 Plus
Dyak\cdc2c-PA 314 GE25682-PA 5..291 1..291 890 59.5 Plus
Dyak\GE14145-PA 294 GE14145-PA 1..291 1..292 821 52.9 Plus
Dyak\GE21370-PA 578 GE21370-PA 258..545 1..287 696 47.1 Plus
Dyak\GE19702-PA 949 GE19702-PA 552..848 1..287 641 42.6 Plus

LD38718.hyp Sequence

Translation from 36 to 929

> LD38718.hyp
MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIR
EISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHM
ESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGLIKVADFGLG
RSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATR
KPLFQGDSEIDQLFRMFRILKTPTEDIWPGVTSLPDYKNTFPCWSTNQLT
NQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYFNGFQSGLVRN*

LD38718.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk1-PA 297 CG5363-PA 1..297 1..297 1557 100 Plus
Cdk2-PC 314 CG10498-PC 5..291 1..291 913 59.5 Plus
Cdk2-PB 314 CG10498-PB 5..291 1..291 913 59.5 Plus
Cdk2-PA 314 CG10498-PA 5..291 1..291 913 59.5 Plus
Cdk5-PA 294 CG8203-PA 1..291 1..292 799 52.6 Plus