Clone LD38742 Report

Search the DGRC for LD38742

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:387
Well:42
Vector:pOT2
Associated Gene/TranscriptCG6506-RA
Protein status:LD38742.pep: gold
Preliminary Size:1448
Sequenced Size:1303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6506 2001-01-01 Release 2 assignment
CG6506 2002-05-16 Blastp of sequenced clone
CG6506 2003-01-01 Sim4 clustering to Release 3
CG6506 2008-04-29 Release 5.5 accounting
CG6506 2008-08-15 Release 5.9 accounting
CG6506 2008-12-18 5.12 accounting

Clone Sequence Records

LD38742.complete Sequence

1303 bp (1303 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118561

> LD38742.complete
TAAACAACAATATATTGTTAAGTAAATGTTGTACGTAGGTTTTTAAGCGA
AATAAACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAGAGGATGACG
GCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCCAAGAAACTT
AAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCAAGAAAAGCA
CCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCATCGAGGTGA
TGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTACTCCAACAAA
AATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGATACCGGAAGT
GGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCCAAAAGTTTC
AGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTACTCTCGCGGG
GATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCGCCAGGCGAT
GCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCACCGACTGTT
CCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAGTTCCTGCGC
AGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCCGCGGCTGCA
GAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCCATTTCGCCC
AAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAGCACAAGGTG
CTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGTACTGCAGGA
GTACGACAAACTGATGAAGGAGAGCCAGAGCAGCATGCAGAAGCAGCACA
ACGAGTTCAACGGCCACGACTTTCTCAACATCCTGGACAACAGCGCCACA
GGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGGCGATATGCTGCAGGA
TCTGGGCGGTAGCACGGGCTCCAGTGGCACAGTCAGCTCCCAGCAGATGC
TGTACGGCCTGCTCGATGGCCAGATATCGTCCAATACCTCCAACATGACG
GGGACGAGCGGCAATGGCAGCACGGGCGGCAATGGAAATGGCAATGGGGC
CACGATTAGCAACTTTCACGCCACTTTTGAAACGTAATTGTTAAAATTGC
GGGGATAACTTCATTATCTCACACTGAGATATCTCTAGCAATCAAATGTT
TCACACTTTTTATAGAACGACTAAGATCTCTAGGCTCAAGTTAAGTTAAG
CTCTAAGGAAACGTACTAATTAAATAGTTTTTATTAAAAAAAAAAAAAAA
AAA

LD38742.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1361 CG6506-RA 64..1349 1..1286 6430 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17740256..17741237 304..1285 4910 100 Plus
chrX 22417052 chrX 17739832..17740031 1..200 1000 100 Plus
chrX 22417052 chrX 17740093..17740203 201..311 540 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17850908..17851890 304..1286 4915 100 Plus
X 23542271 X 17850484..17850683 1..200 1000 100 Plus
X 23542271 X 17850745..17850855 201..311 540 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17859006..17859988 304..1286 4915 100 Plus
X 23527363 X 17858582..17858781 1..200 1000 100 Plus
X 23527363 X 17858843..17858953 201..311 540 99 Plus
Blast to na_te.dros performed 2019-03-15 22:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6198..6263 3..68 123 65.2 Plus

LD38742.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:15 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17739832..17740031 1..200 100 -> Plus
chrX 17740093..17740199 201..308 98 -> Plus
chrX 17740261..17741237 309..1285 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:03 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 58..1137 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:29 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 58..1137 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:01 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 58..1137 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:05 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 58..1137 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:44 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 58..1137 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:51 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1285 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:29 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1285 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:01 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 25..1309 1..1285 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:05 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1285 1..1285 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:44 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 25..1309 1..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:15 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850484..17850683 1..200 100 -> Plus
X 17850745..17850851 201..308 98 -> Plus
X 17850913..17851889 309..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:15 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850484..17850683 1..200 100 -> Plus
X 17850745..17850851 201..308 98 -> Plus
X 17850913..17851889 309..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:15 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850484..17850683 1..200 100 -> Plus
X 17850745..17850851 201..308 98 -> Plus
X 17850913..17851889 309..1285 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:01 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17744517..17744716 1..200 100 -> Plus
arm_X 17744778..17744884 201..308 98 -> Plus
arm_X 17744946..17745922 309..1285 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:24 Download gff for LD38742.complete
Subject Subject Range Query Range Percent Splice Strand
X 17859011..17859987 309..1285 100   Plus
X 17858582..17858781 1..200 100 -> Plus
X 17858843..17858949 201..308 98 -> Plus

LD38742.pep Sequence

Translation from 57 to 1136

> LD38742.pep
MQTEHWGSLPAEDDGGQLTPDKYVPTAAKKLKLDEIRQRGDPQPQEKHHK
LELRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDF
PPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSACRQAMRK
VMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDSQPRLQNS
TVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFNSVLQEYD
KLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMGDMLQDLG
GSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNGNGNGATI
SNFHATFET*

LD38742.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21109-PA 359 GF21109-PA 1..359 1..359 1342 73.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19135-PA 360 GG19135-PA 1..360 1..359 1650 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16819-PA 367 GH16819-PA 4..360 1..336 1187 65.5 Plus
Dgri\GH12140-PA 119 GH12140-PA 1..46 1..48 153 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Spt7-PA 359 CG6506-PA 1..359 1..359 1869 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16196-PA 362 GI16196-PA 1..354 1..334 1168 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14754-PA 368 GL14754-PA 1..327 1..323 1253 73.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19647-PA 368 GA19647-PA 1..327 1..323 1246 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22860-PA 359 GM22860-PA 1..359 1..359 1915 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15888-PA 397 GJ15888-PA 1..351 1..333 1248 68.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25763-PA 367 GK25763-PA 8..367 1..359 1278 68.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17691-PA 360 GE17691-PA 1..360 1..359 1662 95 Plus

LD38742.hyp Sequence

Translation from 336 to 1136

> LD38742.hyp
MIPEVDFPPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSA
CRQAMRKVMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDS
QPRLQNSTVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFN
SVLQEYDKLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMG
DMLQDLGGSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNG
NGNGATISNFHATFET*

LD38742.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 359 CG6506-PA 94..359 1..266 1382 100 Plus