BDGP Sequence Production Resources |
Search the DGRC for LD38760
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 387 |
Well: | 60 |
Vector: | pOT2 |
Associated Gene/Transcript | LBR-RA |
Protein status: | LD38760.pep: gold |
Preliminary Size: | 5201 |
Sequenced Size: | 2697 |
Gene | Date | Evidence |
---|---|---|
CG17952 | 2001-01-01 | Release 2 assignment |
CG17952 | 2001-12-12 | Blastp of sequenced clone |
CG17952 | 2003-01-01 | Sim4 clustering to Release 3 |
LBR | 2008-04-29 | Release 5.5 accounting |
LBR | 2008-08-15 | Release 5.9 accounting |
LBR | 2008-12-18 | 5.12 accounting |
2697 bp (2697 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070562
> LD38760.complete CCGCCGACAACTAGACGCGCGTCTTTTTTATCAAGTGATTTATGCTGAAT TTACGGCGTTTCAATAGCCCCATAAAGTGAAAAACTACAAATAAATCCCA TCAGAACACGTTTTTTCGACCGCAATTCATACACCATGGATCGACGCCTG AGACGCCCGCGTCGCACGGAAGACGTGTCCAGCGGTCCACTTCTGGCCCA GTCCAAGCAGCCCAGCCTCCTGCCGGTGACCCGACGTACGGGCTCCGTGA CAGCTGCGGGTGCCACCGCCACCGCCACCGCCACCGCTGGTCCCGCCACC CGGACACGTGCCTCCCCGTCACGCAACAAGGTCGTCGCACCGCCCTCGCC CGATCTTGGCCCGCGCACCCGTCGCTCCAGCCGGCCGAGGTCGTCGGTGG GTCCGCTGACCGGATCGGGATCTGGTTCCTCGCTGCCCATCAAGGCCGCC ATCAAGGCACGCACACCCATCCCAGAGGTTTCCGAGGTATCATCGCCTAT TCGTTTGTCAACCAGCAATCTGCCCATGACATTGACCACCAACACATCCA GCGGCGCACCGAACAAAGCATTTAACACAAGCTCCGTGAACAGCGGCAAC AGCTTCAGCCGTACCACTACCAGCAGCACCACCACAACCACGGAGCGCAT CGAGATCCGTGCCGAGGGAGACGGCGAGGTGGACACGGATTCCATTCGCA AACGCATAACCGAACGACTGCGCAGATCGGTGTCGAAGACAATCTCAAAT CTAGCTGGAACACCAGTGACAAACACCGAAGAGGGCAGTCGTTATAGTAG GAGTGTGTCCCGATCCGTCTACGACGATGAGAAGTCCTCCAAGCGTAGTT ACTCTACGGGTGAAGAGGATATTGATGAGGAGGATGAATTGGAGGAGGAT CAGTTCCGTAGTTTCAATGTAACCCGTAAATCGGCCACACCGGCGGAAAT ATCCTGCCGTCAGTTGAAGGCTCCTAGAGAATTTGGCGGTTGGCTAGGCG CCTTCCTGTTCCTGCTACTTCTGCCCACCGCCGTCTACTATTTGACATGG AGCTGTACGGCCAGAAACGCCTGTCAGTTTAAGCACCTCAATCTGGGTAT ACTACTGGATGTTAACTACCTAACGCGCCAGGTGTTCCAGCCACGAGTGG TGGGTGCCTTTGCCGCCTATCAGGTGGTGGTATTTCTGCTGGTGGCACTG CTACCAGGACGAAGGGTTCATCTCACCCGCGAGACCTACAAGTTTAATTG TCTAGCAGTTTCGCTTACGCTTTTGATTGCCAGTGGAGTGGCCGAGTATC TGAAGTATCCAGTGGTCACCTTCGTTCTGCGTCACTATCTGCGTTTCTGC ATCTTTGGACTCGTTGGCGCCTTTGTGGCAGCTGCTTGGAGCTACTGGCT GGTGGACACCGCCAAGTACAATGTGCTGCGCCAAACGCTGACCAATGATT ATGGCAGGACTGGCAGCTTTGTGGTGGACTTCGCGCTGGGCAGACAGCTC AATCCCAAGTGGCTAGGACGCGTGGATTGGAAACAGTTTCAGTACCGTCT CTCCCTGGTGACCACCTTGATCTATGCCACCTGCTACATCTACCAGACGC TCGTGTGGCCCCAGAAGCCGCAGCTGGGTGAACAGGAGGGCTATCTCTAC CAGGCCAAATACTACTGGAACAATGTAAATTATGATCCTGCCACCCTGTT CTCGGCCAGCTGCTTGCTGTTCTACGTATTGGACGCCATTATTTTCGAGC ACCACTTGAGCTCATCCTTTGAGCTGCAACACGAAGGCTACGGCTGTTTG CTGCTCCTGCGCTACGCAGCCACTCCATATCTGCTGACGGCGGTCACCAA GTATTTCTACGAGCAGCGTGTACCCATCTCCTGCTGGTATGCTCCGCTGG CAGTGGCTGCTCTGCTGTCTCTGGGATTGCTGGTCAAGCGATTCAGTTGC GCCTACAAGTACAAATACCGATTGAACTCGCAAAGTCCGATCTTCGCCAA CATCGAAACTATTCACACGTATCAGGGAAGCCGTCTGCTGCTCAGCGGAA TGTGGGGATGGGTACGCCAGCCCAACTATCTAGGCGACATCGTGGCCCTG CTGGCCCTGGCTGCTCCCATGGCCCTGCGTCCGGCCTGGCCACCAGTTCT GGGTCTTAGTCTGATCATCCTGCTCCTGCTCCATCGCGCCACCCGAGCGA ACGCCCGGAATCAGGCGCGCTATCACTCCTCCTGGCAGCGCTACAGCACC CAGGTGCGCAGCTACATCCTGCCCAGGGTCTACTAAGCCGGGAGTTGACC CTTCTATTTTCTGTGGCCATTCTTATTTTTATTTTGATTTCAGTTTGTTT TTATTTTATGTTTCGAATTTGTATATATAATACGTATTCATAATTCATAT TGTTCTAGACCACCAATACAGCCCCCCCCCCCCCTTCAGCCCATTACTTT TAGTAACAAAATTTGATTTTACACTCGCCGACACACGCACATTAAACAAA ATGAATTTTCACACACATAATTATAGTTAAAAAACCCATCTAGCTGTACG AACTTATGCGCTTAAGATCTAGACATCTTATATAATCAATACTTGTAATC TATGTGGTATGCATATAGATAGTACTTTTTACATTTAAATATGAAATAAA AAAAAAACATAGTTTCTATGCTATGAAGAAACGCAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LBR-RA | 3058 | LBR-RA | 139..2823 | 1..2685 | 13425 | 100 | Plus |
LBR.a | 2986 | LBR.a | 293..2873 | 105..2685 | 12905 | 100 | Plus |
LBR-RB | 3001 | LBR-RB | 310..2888 | 107..2685 | 12895 | 100 | Plus |
LBR.a | 2986 | LBR.a | 16..122 | 1..107 | 535 | 100 | Plus |
LBR-RB | 3001 | LBR-RB | 16..122 | 1..107 | 535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17608335..17610526 | 485..2684 | 10735 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 17607427..17607808 | 107..488 | 1910 | 100 | Plus |
chr2R | 21145070 | chr2R | 17606991..17607096 | 1..106 | 530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21721856..21724056 | 485..2685 | 11005 | 100 | Plus |
2R | 25286936 | 2R | 21720948..21721329 | 107..488 | 1910 | 100 | Plus |
2R | 25286936 | 2R | 21720512..21720617 | 1..106 | 530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21723055..21725255 | 485..2685 | 11005 | 100 | Plus |
2R | 25260384 | 2R | 21722147..21722528 | 107..488 | 1910 | 100 | Plus |
2R | 25260384 | 2R | 21721711..21721816 | 1..106 | 530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 589..643 | 124 | 71.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17606991..17607096 | 1..106 | 100 | -> | Plus |
chr2R | 17607427..17607806 | 107..486 | 100 | -> | Plus |
chr2R | 17608337..17610526 | 487..2684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RC | 44..2226 | 102..2286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RC | 44..2226 | 102..2286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RC | 44..2226 | 102..2286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RC | 44..2226 | 102..2286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RC | 44..2226 | 102..2286 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RA | 1..2684 | 1..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RA | 1..2684 | 1..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RA | 18..2701 | 1..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RA | 1..2684 | 1..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
LBR-RA | 18..2701 | 1..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21720512..21720617 | 1..106 | 100 | -> | Plus |
2R | 21720948..21721327 | 107..486 | 100 | -> | Plus |
2R | 21721858..21724055 | 487..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21720512..21720617 | 1..106 | 100 | -> | Plus |
2R | 21720948..21721327 | 107..486 | 100 | -> | Plus |
2R | 21721858..21724055 | 487..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21720512..21720617 | 1..106 | 100 | -> | Plus |
2R | 21720948..21721327 | 107..486 | 100 | -> | Plus |
2R | 21721858..21724055 | 487..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17608017..17608122 | 1..106 | 100 | -> | Plus |
arm_2R | 17608453..17608832 | 107..486 | 100 | -> | Plus |
arm_2R | 17609363..17611560 | 487..2684 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21722147..21722526 | 107..486 | 100 | -> | Plus |
2R | 21723057..21725254 | 487..2684 | 100 | Plus | |
2R | 21721711..21721816 | 1..106 | 100 | -> | Plus |
Translation from 135 to 2285
> LD38760.hyp MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW QRYSTQVRSYILPRVY*
Translation from 135 to 2285
> LD38760.pep MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW QRYSTQVRSYILPRVY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13267-PA | 711 | GF13267-PA | 30..711 | 25..716 | 2580 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22139-PA | 715 | GG22139-PA | 11..715 | 11..716 | 2922 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
LBR-PC | 741 | CG17952-PC | 26..741 | 1..716 | 3697 | 100 | Plus |
LBR-PA | 716 | CG17952-PA | 1..716 | 1..716 | 3697 | 100 | Plus |
LBR-PB | 716 | CG17952-PB | 1..716 | 1..716 | 3697 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18730-PA | 706 | GI18730-PA | 1..706 | 1..716 | 2111 | 68.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16949-PA | 698 | GL16949-PA | 20..698 | 23..716 | 2291 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14738-PA | 698 | GA14738-PA | 20..698 | 23..716 | 2298 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15861-PA | 694 | GM15861-PA | 1..694 | 1..716 | 3515 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11624-PA | 710 | GD11624-PA | 1..710 | 1..716 | 3635 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21750-PA | 703 | GJ21750-PA | 37..703 | 50..716 | 2212 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15926-PA | 698 | GK15926-PA | 1..698 | 1..716 | 2239 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12220-PA | 716 | GE12220-PA | 1..716 | 1..716 | 2991 | 95.4 | Plus |