Clone LD38760 Report

Search the DGRC for LD38760

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:387
Well:60
Vector:pOT2
Associated Gene/TranscriptLBR-RA
Protein status:LD38760.pep: gold
Preliminary Size:5201
Sequenced Size:2697

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17952 2001-01-01 Release 2 assignment
CG17952 2001-12-12 Blastp of sequenced clone
CG17952 2003-01-01 Sim4 clustering to Release 3
LBR 2008-04-29 Release 5.5 accounting
LBR 2008-08-15 Release 5.9 accounting
LBR 2008-12-18 5.12 accounting

Clone Sequence Records

LD38760.complete Sequence

2697 bp (2697 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070562

> LD38760.complete
CCGCCGACAACTAGACGCGCGTCTTTTTTATCAAGTGATTTATGCTGAAT
TTACGGCGTTTCAATAGCCCCATAAAGTGAAAAACTACAAATAAATCCCA
TCAGAACACGTTTTTTCGACCGCAATTCATACACCATGGATCGACGCCTG
AGACGCCCGCGTCGCACGGAAGACGTGTCCAGCGGTCCACTTCTGGCCCA
GTCCAAGCAGCCCAGCCTCCTGCCGGTGACCCGACGTACGGGCTCCGTGA
CAGCTGCGGGTGCCACCGCCACCGCCACCGCCACCGCTGGTCCCGCCACC
CGGACACGTGCCTCCCCGTCACGCAACAAGGTCGTCGCACCGCCCTCGCC
CGATCTTGGCCCGCGCACCCGTCGCTCCAGCCGGCCGAGGTCGTCGGTGG
GTCCGCTGACCGGATCGGGATCTGGTTCCTCGCTGCCCATCAAGGCCGCC
ATCAAGGCACGCACACCCATCCCAGAGGTTTCCGAGGTATCATCGCCTAT
TCGTTTGTCAACCAGCAATCTGCCCATGACATTGACCACCAACACATCCA
GCGGCGCACCGAACAAAGCATTTAACACAAGCTCCGTGAACAGCGGCAAC
AGCTTCAGCCGTACCACTACCAGCAGCACCACCACAACCACGGAGCGCAT
CGAGATCCGTGCCGAGGGAGACGGCGAGGTGGACACGGATTCCATTCGCA
AACGCATAACCGAACGACTGCGCAGATCGGTGTCGAAGACAATCTCAAAT
CTAGCTGGAACACCAGTGACAAACACCGAAGAGGGCAGTCGTTATAGTAG
GAGTGTGTCCCGATCCGTCTACGACGATGAGAAGTCCTCCAAGCGTAGTT
ACTCTACGGGTGAAGAGGATATTGATGAGGAGGATGAATTGGAGGAGGAT
CAGTTCCGTAGTTTCAATGTAACCCGTAAATCGGCCACACCGGCGGAAAT
ATCCTGCCGTCAGTTGAAGGCTCCTAGAGAATTTGGCGGTTGGCTAGGCG
CCTTCCTGTTCCTGCTACTTCTGCCCACCGCCGTCTACTATTTGACATGG
AGCTGTACGGCCAGAAACGCCTGTCAGTTTAAGCACCTCAATCTGGGTAT
ACTACTGGATGTTAACTACCTAACGCGCCAGGTGTTCCAGCCACGAGTGG
TGGGTGCCTTTGCCGCCTATCAGGTGGTGGTATTTCTGCTGGTGGCACTG
CTACCAGGACGAAGGGTTCATCTCACCCGCGAGACCTACAAGTTTAATTG
TCTAGCAGTTTCGCTTACGCTTTTGATTGCCAGTGGAGTGGCCGAGTATC
TGAAGTATCCAGTGGTCACCTTCGTTCTGCGTCACTATCTGCGTTTCTGC
ATCTTTGGACTCGTTGGCGCCTTTGTGGCAGCTGCTTGGAGCTACTGGCT
GGTGGACACCGCCAAGTACAATGTGCTGCGCCAAACGCTGACCAATGATT
ATGGCAGGACTGGCAGCTTTGTGGTGGACTTCGCGCTGGGCAGACAGCTC
AATCCCAAGTGGCTAGGACGCGTGGATTGGAAACAGTTTCAGTACCGTCT
CTCCCTGGTGACCACCTTGATCTATGCCACCTGCTACATCTACCAGACGC
TCGTGTGGCCCCAGAAGCCGCAGCTGGGTGAACAGGAGGGCTATCTCTAC
CAGGCCAAATACTACTGGAACAATGTAAATTATGATCCTGCCACCCTGTT
CTCGGCCAGCTGCTTGCTGTTCTACGTATTGGACGCCATTATTTTCGAGC
ACCACTTGAGCTCATCCTTTGAGCTGCAACACGAAGGCTACGGCTGTTTG
CTGCTCCTGCGCTACGCAGCCACTCCATATCTGCTGACGGCGGTCACCAA
GTATTTCTACGAGCAGCGTGTACCCATCTCCTGCTGGTATGCTCCGCTGG
CAGTGGCTGCTCTGCTGTCTCTGGGATTGCTGGTCAAGCGATTCAGTTGC
GCCTACAAGTACAAATACCGATTGAACTCGCAAAGTCCGATCTTCGCCAA
CATCGAAACTATTCACACGTATCAGGGAAGCCGTCTGCTGCTCAGCGGAA
TGTGGGGATGGGTACGCCAGCCCAACTATCTAGGCGACATCGTGGCCCTG
CTGGCCCTGGCTGCTCCCATGGCCCTGCGTCCGGCCTGGCCACCAGTTCT
GGGTCTTAGTCTGATCATCCTGCTCCTGCTCCATCGCGCCACCCGAGCGA
ACGCCCGGAATCAGGCGCGCTATCACTCCTCCTGGCAGCGCTACAGCACC
CAGGTGCGCAGCTACATCCTGCCCAGGGTCTACTAAGCCGGGAGTTGACC
CTTCTATTTTCTGTGGCCATTCTTATTTTTATTTTGATTTCAGTTTGTTT
TTATTTTATGTTTCGAATTTGTATATATAATACGTATTCATAATTCATAT
TGTTCTAGACCACCAATACAGCCCCCCCCCCCCCTTCAGCCCATTACTTT
TAGTAACAAAATTTGATTTTACACTCGCCGACACACGCACATTAAACAAA
ATGAATTTTCACACACATAATTATAGTTAAAAAACCCATCTAGCTGTACG
AACTTATGCGCTTAAGATCTAGACATCTTATATAATCAATACTTGTAATC
TATGTGGTATGCATATAGATAGTACTTTTTACATTTAAATATGAAATAAA
AAAAAAACATAGTTTCTATGCTATGAAGAAACGCAAAAAAAAAAAAA

LD38760.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-RA 3058 LBR-RA 139..2823 1..2685 13425 100 Plus
LBR.a 2986 LBR.a 293..2873 105..2685 12905 100 Plus
LBR-RB 3001 LBR-RB 310..2888 107..2685 12895 100 Plus
LBR.a 2986 LBR.a 16..122 1..107 535 100 Plus
LBR-RB 3001 LBR-RB 16..122 1..107 535 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17608335..17610526 485..2684 10735 99.4 Plus
chr2R 21145070 chr2R 17607427..17607808 107..488 1910 100 Plus
chr2R 21145070 chr2R 17606991..17607096 1..106 530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21721856..21724056 485..2685 11005 100 Plus
2R 25286936 2R 21720948..21721329 107..488 1910 100 Plus
2R 25286936 2R 21720512..21720617 1..106 530 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21723055..21725255 485..2685 11005 100 Plus
2R 25260384 2R 21722147..21722528 107..488 1910 100 Plus
2R 25260384 2R 21721711..21721816 1..106 530 100 Plus
Blast to na_te.dros performed 2019-03-16 20:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7368..7423 589..643 124 71.4 Plus

LD38760.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:26 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17606991..17607096 1..106 100 -> Plus
chr2R 17607427..17607806 107..486 100 -> Plus
chr2R 17608337..17610526 487..2684 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:05 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 44..2226 102..2286 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:18:41 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 44..2226 102..2286 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:39 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 44..2226 102..2286 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:44:48 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 44..2226 102..2286 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:18 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RC 44..2226 102..2286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:51:48 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RA 1..2684 1..2684 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:18:41 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RA 1..2684 1..2684 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:39 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RA 18..2701 1..2684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:44:49 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RA 1..2684 1..2684 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:18 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
LBR-RA 18..2701 1..2684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:26 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21720512..21720617 1..106 100 -> Plus
2R 21720948..21721327 107..486 100 -> Plus
2R 21721858..21724055 487..2684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:26 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21720512..21720617 1..106 100 -> Plus
2R 21720948..21721327 107..486 100 -> Plus
2R 21721858..21724055 487..2684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:26 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21720512..21720617 1..106 100 -> Plus
2R 21720948..21721327 107..486 100 -> Plus
2R 21721858..21724055 487..2684 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:39 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17608017..17608122 1..106 100 -> Plus
arm_2R 17608453..17608832 107..486 100 -> Plus
arm_2R 17609363..17611560 487..2684 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:07 Download gff for LD38760.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21722147..21722526 107..486 100 -> Plus
2R 21723057..21725254 487..2684 100   Plus
2R 21721711..21721816 1..106 100 -> Plus

LD38760.hyp Sequence

Translation from 135 to 2285

> LD38760.hyp
MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT
AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL
PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS
VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS
KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED
ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV
YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF
LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH
YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA
LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ
EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE
GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV
KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG
DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW
QRYSTQVRSYILPRVY*

LD38760.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-PC 741 CG17952-PC 26..741 1..716 3697 100 Plus
LBR-PA 716 CG17952-PA 1..716 1..716 3697 100 Plus
LBR-PB 716 CG17952-PB 1..716 1..716 3697 100 Plus

LD38760.pep Sequence

Translation from 135 to 2285

> LD38760.pep
MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT
AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL
PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS
VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS
KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED
ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV
YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF
LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH
YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA
LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ
EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE
GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV
KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG
DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW
QRYSTQVRSYILPRVY*

LD38760.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13267-PA 711 GF13267-PA 30..711 25..716 2580 84.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22139-PA 715 GG22139-PA 11..715 11..716 2922 93.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
LBR-PC 741 CG17952-PC 26..741 1..716 3697 100 Plus
LBR-PA 716 CG17952-PA 1..716 1..716 3697 100 Plus
LBR-PB 716 CG17952-PB 1..716 1..716 3697 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18730-PA 706 GI18730-PA 1..706 1..716 2111 68.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16949-PA 698 GL16949-PA 20..698 23..716 2291 72.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14738-PA 698 GA14738-PA 20..698 23..716 2298 72.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15861-PA 694 GM15861-PA 1..694 1..716 3515 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11624-PA 710 GD11624-PA 1..710 1..716 3635 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21750-PA 703 GJ21750-PA 37..703 50..716 2212 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15926-PA 698 GK15926-PA 1..698 1..716 2239 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12220-PA 716 GE12220-PA 1..716 1..716 2991 95.4 Plus