Clone LD38858 Report

Search the DGRC for LD38858

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:388
Well:58
Vector:pOT2
Associated Gene/TranscriptCG15445-RA
Protein status:LD38858.pep: gold
Preliminary Size:2255
Sequenced Size:2303

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15445 2001-01-01 Release 2 assignment
CG15445 2003-01-01 Sim4 clustering to Release 3
CG15445 2003-02-24 Blastp of sequenced clone
CG15445 2008-04-29 Release 5.5 accounting
CG15445 2008-08-15 Release 5.9 accounting
CG15445 2008-12-18 5.12 accounting

Clone Sequence Records

LD38858.complete Sequence

2303 bp (2303 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004870

> LD38858.complete
AATTGCGGTGATTCCACCAGGCAGAGCTTATCCCATACGAAGACGCAGCA
CAGTTCACATTAAATAAATTTCCGTAAATAGTTCTTATTTGTCACCCGCC
CAAAATTAAAGTCTACTCCACTGCACCCAACCCCGCGATTATCAACGACT
GCGCATCGTTCTTTGTTGTTTCGTGTAGAAACACATGTGCAAGGAAGAAG
AAGAACCAGAACATCACATCACTCGTAAATAGTAAATATCTAGAGCATGC
CCGATCCTTTGTGACGCGTCAGTTTCAGCCAGTTCGCCACAATTTTTGCC
AAGTCATCGTCGAAAATGTCACAAAACGACAACCTACTCATCCAGATCCG
CGCCCTTCTCCAGTCCGATGGCGAGAAGCTGTGGGAGGAGCCCTACTACT
CCGAAGATCTTGGTAGCATCGAGGGAGCACTAGAAAACCTGGCGCAGAAG
TACTCCGGCATGTTGGGCATCGATATAGGTCGCTGCAAGTTCTTTTTGAC
CGAGCTGCAGGAAAATGCTCTCCGTACGCTGGCCGCCCGACGTGAGTTCA
GCACCACAGGAATTGCCACGTTGAAGGTTCGCCGCGTTGGCGAGCACAGC
GGTGCCACAATGGTGGAAGTGAAGTGCAGCTTGGACATCGTGGGCTCCGA
ACTCCAGGCATGCATAGCGAAGAAACTGGAAGTGCCGAATGCTGCGCACG
TCAAGTGCATCGCTGCCGGCAAAGTGGTGTCCGCCAATGCCACTTTGGCC
GACCAGCAGTTGAAGAACAACCAGCAGTTGATTGTCATTGTGGGCGATGG
GGATAATTCTGGCGAAGCCCTGTACGAAAGGATCAATCGCATCAAGGCCG
ATGTGGAGGCGGTGGTGTCCTCGAAGAATAACCTAATAGAGATGGAGGAT
CAGAATGGCAGCCAAGTGTATTTGCCGCCTTCCGAGCATAAAGCCCTGCT
CATGGGTTTGGGATTCTGTGAGAAGGCCCGTGCGGCCATGAATCGCAAGC
ATTTTGAGGAGGCTCTGCTCCTGCTTTTGGAGGCCGACGAGCATTTTTCT
ACCTGTGGCTCAAAGTTTCTAGAGTCCGTGGATAACTATGCTTTGCTGAA
CCTCGACATAGTGTGGTGCTATTTTTGCCTGAAGAACGTTACCCAGCTCC
CGGATGCTGAGCATCGCTTGGCCCGCTGCAGTCGCAATTTCGGCATCAGC
TATGGCGACAATTTGGAGAGGCTGTACTCCTTGAAGGGCAAGGACTGTCC
CGAGAGGGCTTTAATTATGCGGCTTAAGTTGCTCCAGGGCGTGATCTTCT
TCCACCAGAATCTTCGCAATCAGGCATTTGAGTGCTTCGAAGCGGCTAAA
ACTCTGCTAAATGAACTAAAGATCAACAACGACCAACTGGCTCTCCTGGT
CGATATGGGCTTCGAGCCCTCCGAGGCTCGTATGGCCCTGCGCTCCTGCA
AGGGCGGCACCGCCGTCGAACAGGCTGTTCAGTTTATTCACGAGCGTCGT
CAGCAGCTCAAGAATGCACGCATGAAATATAAAGCGTCCGAGCGTGCTAT
GGAGCGCCGCCTGAAGCGCTCCAATTCCAAAGATTGCACCTGGGTGAATC
CCCGCAGTGTCTGCAGCCTTGCTGACATGGGATTCGAGAGCGGACTGGCC
ACTATCGCCTTGCAGCGCTCTAATAATGATATCCTCCAAGCGGTGGAACT
GCTGCAGACAGAATCGGACGAACTTACTGGTGCTTCGCCATGGTTTCCGG
TCACCGTAGACACGACCAAACTGGCTCAGCTTCTGCAACTGGGATTCAAC
GAGAACGACTCGCGCGTGGCCCTACAGAATGCATCAAATAACATGGAAGA
GGCCATCGAGAGTCTGATGTGCGCCATAGAGAGCGAGGAGGAGCTGAAAG
CGATTTTAAAGCACGTTGGGCGTTTGGCCGAAAATGGTGGGCAAAATCTT
GACGGCCCCTCTACTTCGAACGCCTCCGGGCAGACGCAAGTTGCTTTGCC
AGCGCCCATTATCGAAGCTGTTATCAATCATGCTCGCGTCGAGATTGAAA
CGTACAAGGCCTACGAGCGCTTTAACTCCGACCTCAAACTGAGCGACCTG
GAATACCTGGACTTGCCACTTATCCAGGAGGAGAAGATCCTGACTGAGTA
TTTCAATATGCTGCAGCAGTAGCTTGTATTTGACTTGCCTTTTTTTATAT
CTATACAAAAAAATATAGAAACCCGAAACCGGTTGTCAAGATAACTGTAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

LD38858.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15445-RA 2462 CG15445-RA 105..2353 1..2250 11210 99.9 Plus
CG15445-RD 2415 CG15445-RD 336..2306 279..2250 9820 99.9 Plus
CG15445-RC 2151 CG15445-RC 20..1793 1..1774 8870 100 Plus
CG15445-RC 2151 CG15445-RC 1792..2151 1890..2250 1765 99.7 Plus
CG15445-RD 2415 CG15445-RD 105..335 1..231 1155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20984017..20984821 890..1694 4025 100 Plus
chrX 22417052 chrX 20984935..20985492 1692..2250 2745 99.8 Plus
chrX 22417052 chrX 20983473..20983928 436..891 2280 100 Plus
chrX 22417052 chrX 20982338..20982772 1..435 2175 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21118860..21119664 890..1694 4025 100 Plus
X 23542271 X 21119778..21120335 1692..2250 2745 99.8 Plus
X 23542271 X 21118316..21118771 436..891 2280 100 Plus
X 23542271 X 21117181..21117615 1..435 2175 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21103952..21104756 890..1694 4025 100 Plus
X 23527363 X 21104870..21105427 1692..2250 2755 99.8 Plus
X 23527363 X 21103408..21103863 436..891 2280 100 Plus
X 23527363 X 21102273..21102707 1..435 2175 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:06:14 has no hits.

LD38858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:57 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20982338..20982772 1..435 100 -> Plus
chrX 20983473..20983928 436..891 100 -> Plus
chrX 20984019..20984819 892..1692 100 -> Plus
chrX 20984936..20985490 1693..2248 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:20 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RD 48..1941 279..2172 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:53:16 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RF 1..1857 316..2172 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:44 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RD 48..1941 279..2172 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:26 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RF 1..1857 316..2172 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:38 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RA 23..2269 1..2248 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:20 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RA 23..2269 1..2248 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:16 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RA 23..2269 1..2248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:44 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RA 23..2269 1..2248 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:26 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
CG15445-RA 23..2269 1..2248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:57 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
X 21117181..21117615 1..435 100 -> Plus
X 21118316..21118771 436..891 100 -> Plus
X 21118862..21119662 892..1692 100 -> Plus
X 21119779..21120333 1693..2248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:57 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
X 21117181..21117615 1..435 100 -> Plus
X 21118316..21118771 436..891 100 -> Plus
X 21118862..21119662 892..1692 100 -> Plus
X 21119779..21120333 1693..2248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:57 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
X 21117181..21117615 1..435 100 -> Plus
X 21118316..21118771 436..891 100 -> Plus
X 21118862..21119662 892..1692 100 -> Plus
X 21119779..21120333 1693..2248 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:16 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20988208..20988642 1..435 100 -> Plus
arm_X 20989343..20989798 436..891 100 -> Plus
arm_X 20989889..20990689 892..1692 100 -> Plus
arm_X 20990806..20991360 1693..2248 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:05 Download gff for LD38858.complete
Subject Subject Range Query Range Percent Splice Strand
X 21102273..21102707 1..435 100 -> Plus
X 21103408..21103863 436..891 100 -> Plus
X 21103954..21104754 892..1692 100 -> Plus
X 21104871..21105425 1693..2248 99   Plus

LD38858.hyp Sequence

Translation from 315 to 2171

> LD38858.hyp
MSQNDNLLIQIRALLQSDGEKLWEEPYYSEDLGSIEGALENLAQKYSGML
GIDIGRCKFFLTELQENALRTLAARREFSTTGIATLKVRRVGEHSGATMV
EVKCSLDIVGSELQACIAKKLEVPNAAHVKCIAAGKVVSANATLADQQLK
NNQQLIVIVGDGDNSGEALYERINRIKADVEAVVSSKNNLIEMEDQNGSQ
VYLPPSEHKALLMGLGFCEKARAAMNRKHFEEALLLLLEADEHFSTCGSK
FLESVDNYALLNLDIVWCYFCLKNVTQLPDAEHRLARCSRNFGISYGDNL
ERLYSLKGKDCPERALIMRLKLLQGVIFFHQNLRNQAFECFEAAKTLLNE
LKINNDQLALLVDMGFEPSEARMALRSCKGGTAVEQAVQFIHERRQQLKN
ARMKYKASERAMERRLKRSNSKDCTWVNPRSVCSLADMGFESGLATIALQ
RSNNDILQAVELLQTESDELTGASPWFPVTVDTTKLAQLLQLGFNENDSR
VALQNASNNMEEAIESLMCAIESEEELKAILKHVGRLAENGGQNLDGPST
SNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLDL
PLIQEEKILTEYFNMLQQ*

LD38858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15445-PH 618 CG15445-PH 1..618 1..618 3138 100 Plus
CG15445-PG 618 CG15445-PG 1..618 1..618 3138 100 Plus
CG15445-PF 618 CG15445-PF 1..618 1..618 3138 100 Plus
CG15445-PE 618 CG15445-PE 1..618 1..618 3138 100 Plus
CG15445-PA 618 CG15445-PA 1..618 1..618 3138 100 Plus

LD38858.pep Sequence

Translation from 315 to 2171

> LD38858.pep
MSQNDNLLIQIRALLQSDGEKLWEEPYYSEDLGSIEGALENLAQKYSGML
GIDIGRCKFFLTELQENALRTLAARREFSTTGIATLKVRRVGEHSGATMV
EVKCSLDIVGSELQACIAKKLEVPNAAHVKCIAAGKVVSANATLADQQLK
NNQQLIVIVGDGDNSGEALYERINRIKADVEAVVSSKNNLIEMEDQNGSQ
VYLPPSEHKALLMGLGFCEKARAAMNRKHFEEALLLLLEADEHFSTCGSK
FLESVDNYALLNLDIVWCYFCLKNVTQLPDAEHRLARCSRNFGISYGDNL
ERLYSLKGKDCPERALIMRLKLLQGVIFFHQNLRNQAFECFEAAKTLLNE
LKINNDQLALLVDMGFEPSEARMALRSCKGGTAVEQAVQFIHERRQQLKN
ARMKYKASERAMERRLKRSNSKDCTWVNPRSVCSLADMGFESGLATIALQ
RSNNDILQAVELLQTESDELTGASPWFPVTVDTTKLAQLLQLGFNENDSR
VALQNASNNMEEAIESLMCAIESEEELKAILKHVGRLAENGGQNLDGPST
SNASGQTQVALPAPIIEAVINHARVEIETYKAYERFNSDLKLSDLEYLDL
PLIQEEKILTEYFNMLQQ*

LD38858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21714-PA 612 GF21714-PA 1..612 1..618 1907 62.4 Plus
Dana\GF17272-PA 615 GF17272-PA 1..615 1..618 1510 50.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19709-PA 565 GG19709-PA 1..565 1..618 2153 69.1 Plus
Dere\GG11412-PA 614 GG11412-PA 1..614 1..618 1425 47.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11840-PA 610 GH11840-PA 1..610 1..618 1739 58.3 Plus
Dgri\GH18980-PA 615 GH18980-PA 1..614 1..617 1504 48.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15445-PH 618 CG15445-PH 1..618 1..618 3138 100 Plus
CG15445-PG 618 CG15445-PG 1..618 1..618 3138 100 Plus
CG15445-PF 618 CG15445-PF 1..618 1..618 3138 100 Plus
CG15445-PE 618 CG15445-PE 1..618 1..618 3138 100 Plus
CG15445-PA 618 CG15445-PA 1..618 1..618 3138 100 Plus
CG5111-PA 614 CG5111-PA 1..613 1..617 1367 46.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14315-PA 612 GI14315-PA 1..612 1..618 1686 59.3 Plus
Dmoj\GI22406-PA 584 GI22406-PA 1..584 1..618 1421 47.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16401-PA 611 GL16401-PA 1..611 1..618 1729 56.9 Plus
Dper\GL22144-PA 597 GL22144-PA 1..597 1..618 1374 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13736-PA 611 GA13736-PA 1..611 1..618 1714 56.6 Plus
Dpse\GA18667-PA 597 GA18667-PA 1..597 1..618 1390 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23064-PA 579 GM23064-PA 1..579 1..618 2654 82.7 Plus
Dsec\GM10250-PA 614 GM10250-PA 1..613 1..617 1379 46.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17514-PA 530 GD17514-PA 1..530 1..530 2471 88.9 Plus
Dsim\GD21223-PA 614 GD21223-PA 1..613 1..617 1381 46.7 Plus
Dsim\GD24435-PA 207 GD24435-PA 1..207 412..618 944 85 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19373-PA 610 GJ19373-PA 1..610 1..618 1727 59.1 Plus
Dvir\GJ10966-PA 632 GJ10966-PA 1..632 1..618 1553 51.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10251-PA 621 GK10251-PA 1..621 1..618 1828 59.3 Plus
Dwil\GK12848-PA 626 GK12848-PA 1..626 1..618 1544 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17908-PA 579 GE17908-PA 1..579 1..618 2468 77.5 Plus
Dyak\GE23608-PA 614 GE23608-PA 1..614 1..618 1407 48.2 Plus