BDGP Sequence Production Resources |
Search the DGRC for LD38861
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 388 |
Well: | 61 |
Vector: | pOT2 |
Associated Gene/Transcript | CG2246-RB |
Protein status: | LD38861.pep: gold |
Preliminary Size: | 1741 |
Sequenced Size: | 1602 |
Gene | Date | Evidence |
---|---|---|
CG2246-RA | 2009-06-22 | Replacement based on scoring |
1602 bp assembled on 2009-08-13
GenBank Submission: BT099581.1
> LD38861.complete AGGATTTTGTGGCAGTTTTGTCTGAGTTTTCGGAAAAGTGCGAATTAAGT GAAGCAGTGTCGTGAAGAAAAGAGTAATTATTGATAAACGTTTATTAATA GCTAATATAATCGGCGAATGTGTGATAGTGTCTCTGTATTAATTACTACT TTCTTCGGCCTGTTAACACTGCTAAAAACAGGATATAGATCTAGGCAAGA AAGAAGAGAAAACTTGAATATAAATCCATAAGCGTCGAGATAAAACAGCT AATTCTTCGAAAAGTCAACATGCTGCTGCAGCGGAACAAATTAGGCAGCG TACGGCCACCAAAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCG GACATTGTCATCATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGT GGCCGAGCGTATGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGT CCAATAGGGAGACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGAC ATCTACATCATCCAAACGGGCACAAAGGATGCCAACAATAATATCATGGA GCTTCTGATTATGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCG TGGGAGTGATTCCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAG CGCGGCTGCATTGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGG CCTGACGCACATCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCT TCTTTGACATACCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAA TATATTCAAGAGAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCG CAATCCGGGCGTGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTC TTGGCCTGGCCGTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAG GTCGACGGTCGGTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACA CGCCCCAACCAGCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTG TTCCGGAGCACATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGAT GTCAGTGGACGCATCGCCATCATGGTGGATGACCTGATCGACGATGTGCA GGCCTTCGTGGCCGCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGA TATACGTGCTGGCCACGCATGGTCTGCTTAGCTCAGATGCACCGCGTCAG CTGGACGAGTCGCCCATCGATGAGATCGTTGTAACCAATACCATTCCACA CGAGATCCAAAAGCTGCAGTGCCATAAGATCAAGACGATCGACATCTCCA TTCTGATCGCTGAGGCCATTCGCCGCATTCACAACAAGGAGTCCATGTCC TATCTGTTCCGCAACGTAACGCTGGAGGACTAGGGGACCCACTCACTCAT ATAACCACTCACAAGTCACAAAAATAGTGTTGCAACCGACCCGTTTTGGG TCGTTTTTTGTTTGTTTATCGCTTTTAGACATCAATTCAACGAGCGCCCA GCGCACGTTTGCTCAAATAAAATTGATTGATCCCAAAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2246-RG | 1877 | CG2246-RG | 31..1615 | 1..1585 | 7925 | 100 | Plus |
CG2246-RA | 1782 | CG2246-RA | 1..982 | 1..982 | 4910 | 100 | Plus |
CG2246.f | 1695 | CG2246.f | 1..982 | 1..982 | 4910 | 100 | Plus |
CG2246-RA | 1782 | CG2246-RA | 1038..1642 | 981..1585 | 3025 | 100 | Plus |
CG2246.f | 1695 | CG2246.f | 978..1555 | 1008..1585 | 2890 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26415637..26415948 | 1584..1273 | 1560 | 100 | Minus |
chr3R | 27901430 | chr3R | 26417564..26417852 | 815..527 | 1445 | 100 | Minus |
chr3R | 27901430 | chr3R | 26423706..26423994 | 289..1 | 1355 | 97.9 | Minus |
chr3R | 27901430 | chr3R | 26417912..26418153 | 527..286 | 1165 | 98.8 | Minus |
chr3R | 27901430 | chr3R | 26417342..26417508 | 982..816 | 835 | 100 | Minus |
chr3R | 27901430 | chr3R | 26416015..26416162 | 1274..1127 | 740 | 100 | Minus |
chr3R | 27901430 | chr3R | 26416230..26416377 | 1128..981 | 725 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30593110..30593422 | 1585..1273 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 30595040..30595328 | 815..527 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 30601201..30601489 | 289..1 | 1445 | 100 | Minus |
3R | 32079331 | 3R | 30595389..30595630 | 527..286 | 1195 | 99.6 | Minus |
3R | 32079331 | 3R | 30594818..30594984 | 982..816 | 835 | 100 | Minus |
3R | 32079331 | 3R | 30593489..30593636 | 1274..1127 | 740 | 100 | Minus |
3R | 32079331 | 3R | 30593704..30593851 | 1128..981 | 740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30333941..30334253 | 1585..1273 | 1565 | 100 | Minus |
3R | 31820162 | 3R | 30342032..30342320 | 289..1 | 1445 | 100 | Minus |
3R | 31820162 | 3R | 30335871..30336159 | 815..527 | 1445 | 100 | Minus |
3R | 31820162 | 3R | 30336220..30336461 | 527..286 | 1195 | 99.5 | Minus |
3R | 31820162 | 3R | 30335649..30335815 | 982..816 | 835 | 100 | Minus |
3R | 31820162 | 3R | 30334535..30334682 | 1128..981 | 740 | 100 | Minus |
3R | 31820162 | 3R | 30334320..30334467 | 1274..1127 | 740 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26415637..26415946 | 1275..1584 | 100 | <- | Minus |
chr3R | 26416015..26416161 | 1128..1274 | 100 | <- | Minus |
chr3R | 26416231..26416375 | 983..1127 | 99 | <- | Minus |
chr3R | 26417342..26417508 | 816..982 | 100 | <- | Minus |
chr3R | 26417564..26417852 | 527..815 | 100 | <- | Minus |
chr3R | 26417913..26418149 | 290..526 | 99 | <- | Minus |
chr3R | 26423706..26423994 | 1..289 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RB | 1..1164 | 270..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RB | 1..1164 | 270..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RB | 1..1164 | 270..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RB | 1..1164 | 270..1433 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RB | 41..1443 | 182..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RG | 1..1584 | 1..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RG | 1..1584 | 1..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2246-RG | 1..1584 | 1..1584 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30593111..30593420 | 1275..1584 | 100 | <- | Minus |
3R | 30593489..30593635 | 1128..1274 | 100 | <- | Minus |
3R | 30593705..30593849 | 983..1127 | 100 | <- | Minus |
3R | 30594818..30594984 | 816..982 | 100 | <- | Minus |
3R | 30595040..30595328 | 527..815 | 100 | <- | Minus |
3R | 30595390..30595626 | 290..526 | 100 | <- | Minus |
3R | 30601201..30601489 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30593111..30593420 | 1275..1584 | 100 | <- | Minus |
3R | 30593489..30593635 | 1128..1274 | 100 | <- | Minus |
3R | 30593705..30593849 | 983..1127 | 100 | <- | Minus |
3R | 30594818..30594984 | 816..982 | 100 | <- | Minus |
3R | 30595040..30595328 | 527..815 | 100 | <- | Minus |
3R | 30595390..30595626 | 290..526 | 100 | <- | Minus |
3R | 30601201..30601489 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30593111..30593420 | 1275..1584 | 100 | <- | Minus |
3R | 30593489..30593635 | 1128..1274 | 100 | <- | Minus |
3R | 30593705..30593849 | 983..1127 | 100 | <- | Minus |
3R | 30594818..30594984 | 816..982 | 100 | <- | Minus |
3R | 30595040..30595328 | 527..815 | 100 | <- | Minus |
3R | 30595390..30595626 | 290..526 | 100 | <- | Minus |
3R | 30601201..30601489 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26418833..26419142 | 1275..1584 | 100 | <- | Minus |
arm_3R | 26419211..26419357 | 1128..1274 | 100 | <- | Minus |
arm_3R | 26419427..26419571 | 983..1127 | 100 | <- | Minus |
arm_3R | 26420540..26420706 | 816..982 | 100 | <- | Minus |
arm_3R | 26420762..26421050 | 527..815 | 100 | <- | Minus |
arm_3R | 26421112..26421348 | 290..526 | 100 | <- | Minus |
arm_3R | 26426923..26427211 | 1..289 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30333942..30334251 | 1275..1584 | 100 | <- | Minus |
3R | 30334320..30334466 | 1128..1274 | 100 | <- | Minus |
3R | 30334536..30334680 | 983..1127 | 100 | <- | Minus |
3R | 30335649..30335815 | 816..982 | 100 | <- | Minus |
3R | 30335871..30336159 | 527..815 | 100 | <- | Minus |
3R | 30336221..30336457 | 290..526 | 100 | <- | Minus |
3R | 30342032..30342320 | 1..289 | 100 | Minus |
Translation from 269 to 1432
> LD38861.pep MLLQRNKLGSVRPPKRCRSDMDNTSTSDIVIINGNSHPDLANMVAERMGI KNGGCSVFHKSNRETIVEISDSVRGKDIYIIQTGTKDANNNIMELLIMAY ACKTSSARSIVGVIPYLPYSKQCKMRKRGCIVSKLLAKMMCTSGLTHIIT MDLHQKEIQGFFDIPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGVAK KANSYAERLRLGLAVIHGEQKETDADEVDGRYSPPPTRNSTPQHAPTSSA RQRTTSVSVGVPEHIVKVKPPLTIVGDVSGRIAIMVDDLIDDVQAFVAAA EMLKENGACKIYVLATHGLLSSDAPRQLDESPIDEIVVTNTIPHEIQKLQ CHKIKTIDISILIAEAIRRIHNKESMSYLFRNVTLED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23320-PA | 406 | GF23320-PA | 1..406 | 1..387 | 1975 | 92.4 | Plus |
Dana\GF24649-PA | 388 | GF24649-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Dana\GF15832-PA | 323 | GF15832-PA | 4..305 | 29..372 | 478 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11922-PA | 406 | GG11922-PA | 1..406 | 1..387 | 2029 | 95.3 | Plus |
Dere\GG14016-PA | 388 | GG14016-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14115-PA | 406 | GH14115-PA | 1..406 | 1..387 | 1928 | 91.2 | Plus |
Dgri\GH15140-PA | 388 | GH15140-PA | 50..386 | 28..383 | 727 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2246-PG | 387 | CG2246-PG | 1..387 | 1..387 | 1975 | 100 | Plus |
CG2246-PB | 387 | CG2246-PB | 1..387 | 1..387 | 1975 | 100 | Plus |
CG2246-PJ | 385 | CG2246-PJ | 1..385 | 3..387 | 1947 | 98.7 | Plus |
CG2246-PH | 406 | CG2246-PH | 1..406 | 1..387 | 1945 | 95.3 | Plus |
CG2246-PA | 406 | CG2246-PA | 1..406 | 1..387 | 1945 | 95.3 | Plus |
CG2246-PI | 404 | CG2246-PI | 1..404 | 3..387 | 1917 | 94.1 | Plus |
CG2246-PO | 377 | CG2246-PO | 1..377 | 1..387 | 1898 | 97.4 | Plus |
CG2246-PN | 376 | CG2246-PN | 1..376 | 1..387 | 1893 | 97.2 | Plus |
CG2246-PM | 367 | CG2246-PM | 1..367 | 21..387 | 1870 | 100 | Plus |
CG2246-PL | 367 | CG2246-PL | 1..367 | 21..387 | 1870 | 100 | Plus |
CG2246-PK | 367 | CG2246-PK | 1..367 | 21..387 | 1870 | 100 | Plus |
CG2246-PF | 367 | CG2246-PF | 1..367 | 21..387 | 1870 | 100 | Plus |
CG2246-PD | 367 | CG2246-PD | 1..367 | 21..387 | 1870 | 100 | Plus |
CG2246-PC | 386 | CG2246-PC | 1..386 | 21..387 | 1840 | 95.1 | Plus |
CG2246-PE | 386 | CG2246-PE | 1..386 | 21..387 | 1840 | 95.1 | Plus |
CG2246-PP | 356 | CG2246-PP | 1..356 | 21..387 | 1788 | 97 | Plus |
CG6767-PH | 350 | CG6767-PH | 35..348 | 28..383 | 716 | 43.4 | Plus |
CG6767-PA | 350 | CG6767-PA | 35..348 | 28..383 | 716 | 43.4 | Plus |
CG6767-PC | 354 | CG6767-PC | 35..352 | 28..383 | 712 | 42.9 | Plus |
CG6767-PJ | 354 | CG6767-PJ | 35..352 | 28..383 | 712 | 42.9 | Plus |
CG6767-PF | 369 | CG6767-PF | 50..367 | 28..383 | 712 | 42.9 | Plus |
CG6767-PD | 373 | CG6767-PD | 50..371 | 28..383 | 708 | 42.5 | Plus |
CG6767-PG | 373 | CG6767-PG | 35..371 | 28..383 | 697 | 40.8 | Plus |
CG6767-PI | 373 | CG6767-PI | 35..371 | 28..383 | 697 | 40.8 | Plus |
CG6767-PB | 388 | CG6767-PB | 50..386 | 28..383 | 697 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10642-PA | 405 | GI10642-PA | 1..405 | 1..387 | 1946 | 91.9 | Plus |
Dmoj\GI12077-PA | 388 | GI12077-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14002-PA | 274 | GL14002-PA | 1..237 | 1..237 | 1249 | 97.5 | Plus |
Dper\GL20451-PA | 101 | GL20451-PA | 1..101 | 287..387 | 508 | 97 | Plus |
Dper\GL14515-PA | 101 | GL14515-PA | 1..101 | 287..387 | 508 | 97 | Plus |
Dper\GL19127-PA | 369 | GL19127-PA | 4..313 | 29..380 | 479 | 33.1 | Plus |
Dper\GL12852-PA | 213 | GL12852-PA | 50..211 | 28..164 | 319 | 42 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26930-PA | 407 | GA26930-PA | 1..407 | 1..387 | 1954 | 91.9 | Plus |
Dpse\GA26930-PB | 368 | GA26930-PB | 1..368 | 21..387 | 1875 | 96.2 | Plus |
Dpse\GA26930-PC | 387 | GA26930-PC | 1..387 | 21..387 | 1843 | 91.5 | Plus |
Dpse\GA19849-PA | 387 | GA19849-PA | 50..385 | 28..383 | 727 | 40.9 | Plus |
Dpse\GA27810-PA | 369 | GA27810-PA | 4..315 | 29..382 | 483 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12142-PA | 406 | GM12142-PA | 1..406 | 1..387 | 2029 | 95.3 | Plus |
Dsec\GM24850-PA | 388 | GM24850-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12902-PA | 388 | GD12902-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Dsim\GD15073-PA | 103 | GD15073-PA | 1..103 | 285..387 | 539 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22998-PA | 405 | GJ22998-PA | 1..405 | 1..387 | 1937 | 91.6 | Plus |
Dvir\GJ13347-PA | 371 | GJ13347-PA | 40..369 | 28..383 | 692 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13119-PA | 405 | GK13119-PA | 1..405 | 1..387 | 1950 | 91.6 | Plus |
Dwil\GK17570-PA | 388 | GK17570-PA | 50..386 | 28..383 | 726 | 40.8 | Plus |
Dwil\GK18441-PA | 310 | GK18441-PA | 4..296 | 28..362 | 569 | 36.6 | Plus |
Translation from 269 to 1432
> LD38861.hyp MLLQRNKLGSVRPPKRCRSDMDNTSTSDIVIINGNSHPDLANMVAERMGI KNGGCSVFHKSNRETIVEISDSVRGKDIYIIQTGTKDANNNIMELLIMAY ACKTSSARSIVGVIPYLPYSKQCKMRKRGCIVSKLLAKMMCTSGLTHIIT MDLHQKEIQGFFDIPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGVAK KANSYAERLRLGLAVIHGEQKETDADEVDGRYSPPPTRNSTPQHAPTSSA RQRTTSVSVGVPEHIVKVKPPLTIVGDVSGRIAIMVDDLIDDVQAFVAAA EMLKENGACKIYVLATHGLLSSDAPRQLDESPIDEIVVTNTIPHEIQKLQ CHKIKTIDISILIAEAIRRIHNKESMSYLFRNVTLED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2246-PG | 387 | CG2246-PG | 1..387 | 1..387 | 1975 | 100 | Plus |
CG2246-PB | 387 | CG2246-PB | 1..387 | 1..387 | 1975 | 100 | Plus |
CG2246-PJ | 385 | CG2246-PJ | 1..385 | 3..387 | 1947 | 98.7 | Plus |
CG2246-PH | 406 | CG2246-PH | 1..406 | 1..387 | 1945 | 95.3 | Plus |
CG2246-PA | 406 | CG2246-PA | 1..406 | 1..387 | 1945 | 95.3 | Plus |