Clone LD38861 Report

Search the DGRC for LD38861

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:388
Well:61
Vector:pOT2
Associated Gene/TranscriptCG2246-RB
Protein status:LD38861.pep: gold
Preliminary Size:1741
Sequenced Size:1602

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2246-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

LD38861.complete Sequence

1602 bp assembled on 2009-08-13

GenBank Submission: BT099581.1

> LD38861.complete
AGGATTTTGTGGCAGTTTTGTCTGAGTTTTCGGAAAAGTGCGAATTAAGT
GAAGCAGTGTCGTGAAGAAAAGAGTAATTATTGATAAACGTTTATTAATA
GCTAATATAATCGGCGAATGTGTGATAGTGTCTCTGTATTAATTACTACT
TTCTTCGGCCTGTTAACACTGCTAAAAACAGGATATAGATCTAGGCAAGA
AAGAAGAGAAAACTTGAATATAAATCCATAAGCGTCGAGATAAAACAGCT
AATTCTTCGAAAAGTCAACATGCTGCTGCAGCGGAACAAATTAGGCAGCG
TACGGCCACCAAAGCGTTGCAGGAGCGACATGGATAACACCTCCACCTCG
GACATTGTCATCATCAATGGCAACTCGCATCCGGATCTGGCCAATATGGT
GGCCGAGCGTATGGGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGT
CCAATAGGGAGACTATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGAC
ATCTACATCATCCAAACGGGCACAAAGGATGCCAACAATAATATCATGGA
GCTTCTGATTATGGCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCG
TGGGAGTGATTCCATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAG
CGCGGCTGCATTGTGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGG
CCTGACGCACATCATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCT
TCTTTGACATACCCGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAA
TATATTCAAGAGAGCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCG
CAATCCGGGCGTGGCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTC
TTGGCCTGGCCGTCATCCATGGCGAACAGAAGGAAACGGATGCCGATGAG
GTCGACGGTCGGTACTCCCCTCCACCGACCAGAAACTCTACTCCACAACA
CGCCCCAACCAGCAGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTG
TTCCGGAGCACATTGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGAT
GTCAGTGGACGCATCGCCATCATGGTGGATGACCTGATCGACGATGTGCA
GGCCTTCGTGGCCGCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGA
TATACGTGCTGGCCACGCATGGTCTGCTTAGCTCAGATGCACCGCGTCAG
CTGGACGAGTCGCCCATCGATGAGATCGTTGTAACCAATACCATTCCACA
CGAGATCCAAAAGCTGCAGTGCCATAAGATCAAGACGATCGACATCTCCA
TTCTGATCGCTGAGGCCATTCGCCGCATTCACAACAAGGAGTCCATGTCC
TATCTGTTCCGCAACGTAACGCTGGAGGACTAGGGGACCCACTCACTCAT
ATAACCACTCACAAGTCACAAAAATAGTGTTGCAACCGACCCGTTTTGGG
TCGTTTTTTGTTTGTTTATCGCTTTTAGACATCAATTCAACGAGCGCCCA
GCGCACGTTTGCTCAAATAAAATTGATTGATCCCAAAAAAAAAAAAAAAA
AA

LD38861.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-RG 1877 CG2246-RG 31..1615 1..1585 7925 100 Plus
CG2246-RA 1782 CG2246-RA 1..982 1..982 4910 100 Plus
CG2246.f 1695 CG2246.f 1..982 1..982 4910 100 Plus
CG2246-RA 1782 CG2246-RA 1038..1642 981..1585 3025 100 Plus
CG2246.f 1695 CG2246.f 978..1555 1008..1585 2890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26415637..26415948 1584..1273 1560 100 Minus
chr3R 27901430 chr3R 26417564..26417852 815..527 1445 100 Minus
chr3R 27901430 chr3R 26423706..26423994 289..1 1355 97.9 Minus
chr3R 27901430 chr3R 26417912..26418153 527..286 1165 98.8 Minus
chr3R 27901430 chr3R 26417342..26417508 982..816 835 100 Minus
chr3R 27901430 chr3R 26416015..26416162 1274..1127 740 100 Minus
chr3R 27901430 chr3R 26416230..26416377 1128..981 725 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30593110..30593422 1585..1273 1565 100 Minus
3R 32079331 3R 30595040..30595328 815..527 1445 100 Minus
3R 32079331 3R 30601201..30601489 289..1 1445 100 Minus
3R 32079331 3R 30595389..30595630 527..286 1195 99.6 Minus
3R 32079331 3R 30594818..30594984 982..816 835 100 Minus
3R 32079331 3R 30593489..30593636 1274..1127 740 100 Minus
3R 32079331 3R 30593704..30593851 1128..981 740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30333941..30334253 1585..1273 1565 100 Minus
3R 31820162 3R 30342032..30342320 289..1 1445 100 Minus
3R 31820162 3R 30335871..30336159 815..527 1445 100 Minus
3R 31820162 3R 30336220..30336461 527..286 1195 99.5 Minus
3R 31820162 3R 30335649..30335815 982..816 835 100 Minus
3R 31820162 3R 30334535..30334682 1128..981 740 100 Minus
3R 31820162 3R 30334320..30334467 1274..1127 740 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:12:36 has no hits.

LD38861.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:13:35 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26415637..26415946 1275..1584 100 <- Minus
chr3R 26416015..26416161 1128..1274 100 <- Minus
chr3R 26416231..26416375 983..1127 99 <- Minus
chr3R 26417342..26417508 816..982 100 <- Minus
chr3R 26417564..26417852 527..815 100 <- Minus
chr3R 26417913..26418149 290..526 99 <- Minus
chr3R 26423706..26423994 1..289 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:14:03 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 1..1164 270..1433 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:58:38 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 1..1164 270..1433 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:59 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 1..1164 270..1433 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:59:12 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 1..1164 270..1433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-13 10:28:43 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RB 41..1443 182..1584 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:58:38 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RG 1..1584 1..1584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:59 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RG 1..1584 1..1584 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:59:12 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
CG2246-RG 1..1584 1..1584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:35 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1275..1584 100 <- Minus
3R 30593489..30593635 1128..1274 100 <- Minus
3R 30593705..30593849 983..1127 100 <- Minus
3R 30594818..30594984 816..982 100 <- Minus
3R 30595040..30595328 527..815 100 <- Minus
3R 30595390..30595626 290..526 100 <- Minus
3R 30601201..30601489 1..289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:35 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1275..1584 100 <- Minus
3R 30593489..30593635 1128..1274 100 <- Minus
3R 30593705..30593849 983..1127 100 <- Minus
3R 30594818..30594984 816..982 100 <- Minus
3R 30595040..30595328 527..815 100 <- Minus
3R 30595390..30595626 290..526 100 <- Minus
3R 30601201..30601489 1..289 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:35 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30593111..30593420 1275..1584 100 <- Minus
3R 30593489..30593635 1128..1274 100 <- Minus
3R 30593705..30593849 983..1127 100 <- Minus
3R 30594818..30594984 816..982 100 <- Minus
3R 30595040..30595328 527..815 100 <- Minus
3R 30595390..30595626 290..526 100 <- Minus
3R 30601201..30601489 1..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:59 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26418833..26419142 1275..1584 100 <- Minus
arm_3R 26419211..26419357 1128..1274 100 <- Minus
arm_3R 26419427..26419571 983..1127 100 <- Minus
arm_3R 26420540..26420706 816..982 100 <- Minus
arm_3R 26420762..26421050 527..815 100 <- Minus
arm_3R 26421112..26421348 290..526 100 <- Minus
arm_3R 26426923..26427211 1..289 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:50:19 Download gff for LD38861.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30333942..30334251 1275..1584 100 <- Minus
3R 30334320..30334466 1128..1274 100 <- Minus
3R 30334536..30334680 983..1127 100 <- Minus
3R 30335649..30335815 816..982 100 <- Minus
3R 30335871..30336159 527..815 100 <- Minus
3R 30336221..30336457 290..526 100 <- Minus
3R 30342032..30342320 1..289 100   Minus

LD38861.pep Sequence

Translation from 269 to 1432

> LD38861.pep
MLLQRNKLGSVRPPKRCRSDMDNTSTSDIVIINGNSHPDLANMVAERMGI
KNGGCSVFHKSNRETIVEISDSVRGKDIYIIQTGTKDANNNIMELLIMAY
ACKTSSARSIVGVIPYLPYSKQCKMRKRGCIVSKLLAKMMCTSGLTHIIT
MDLHQKEIQGFFDIPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGVAK
KANSYAERLRLGLAVIHGEQKETDADEVDGRYSPPPTRNSTPQHAPTSSA
RQRTTSVSVGVPEHIVKVKPPLTIVGDVSGRIAIMVDDLIDDVQAFVAAA
EMLKENGACKIYVLATHGLLSSDAPRQLDESPIDEIVVTNTIPHEIQKLQ
CHKIKTIDISILIAEAIRRIHNKESMSYLFRNVTLED*

LD38861.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23320-PA 406 GF23320-PA 1..406 1..387 1975 92.4 Plus
Dana\GF24649-PA 388 GF24649-PA 50..386 28..383 726 40.8 Plus
Dana\GF15832-PA 323 GF15832-PA 4..305 29..372 478 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11922-PA 406 GG11922-PA 1..406 1..387 2029 95.3 Plus
Dere\GG14016-PA 388 GG14016-PA 50..386 28..383 726 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14115-PA 406 GH14115-PA 1..406 1..387 1928 91.2 Plus
Dgri\GH15140-PA 388 GH15140-PA 50..386 28..383 727 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-PG 387 CG2246-PG 1..387 1..387 1975 100 Plus
CG2246-PB 387 CG2246-PB 1..387 1..387 1975 100 Plus
CG2246-PJ 385 CG2246-PJ 1..385 3..387 1947 98.7 Plus
CG2246-PH 406 CG2246-PH 1..406 1..387 1945 95.3 Plus
CG2246-PA 406 CG2246-PA 1..406 1..387 1945 95.3 Plus
CG2246-PI 404 CG2246-PI 1..404 3..387 1917 94.1 Plus
CG2246-PO 377 CG2246-PO 1..377 1..387 1898 97.4 Plus
CG2246-PN 376 CG2246-PN 1..376 1..387 1893 97.2 Plus
CG2246-PM 367 CG2246-PM 1..367 21..387 1870 100 Plus
CG2246-PL 367 CG2246-PL 1..367 21..387 1870 100 Plus
CG2246-PK 367 CG2246-PK 1..367 21..387 1870 100 Plus
CG2246-PF 367 CG2246-PF 1..367 21..387 1870 100 Plus
CG2246-PD 367 CG2246-PD 1..367 21..387 1870 100 Plus
CG2246-PC 386 CG2246-PC 1..386 21..387 1840 95.1 Plus
CG2246-PE 386 CG2246-PE 1..386 21..387 1840 95.1 Plus
CG2246-PP 356 CG2246-PP 1..356 21..387 1788 97 Plus
CG6767-PH 350 CG6767-PH 35..348 28..383 716 43.4 Plus
CG6767-PA 350 CG6767-PA 35..348 28..383 716 43.4 Plus
CG6767-PC 354 CG6767-PC 35..352 28..383 712 42.9 Plus
CG6767-PJ 354 CG6767-PJ 35..352 28..383 712 42.9 Plus
CG6767-PF 369 CG6767-PF 50..367 28..383 712 42.9 Plus
CG6767-PD 373 CG6767-PD 50..371 28..383 708 42.5 Plus
CG6767-PG 373 CG6767-PG 35..371 28..383 697 40.8 Plus
CG6767-PI 373 CG6767-PI 35..371 28..383 697 40.8 Plus
CG6767-PB 388 CG6767-PB 50..386 28..383 697 40.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10642-PA 405 GI10642-PA 1..405 1..387 1946 91.9 Plus
Dmoj\GI12077-PA 388 GI12077-PA 50..386 28..383 726 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14002-PA 274 GL14002-PA 1..237 1..237 1249 97.5 Plus
Dper\GL20451-PA 101 GL20451-PA 1..101 287..387 508 97 Plus
Dper\GL14515-PA 101 GL14515-PA 1..101 287..387 508 97 Plus
Dper\GL19127-PA 369 GL19127-PA 4..313 29..380 479 33.1 Plus
Dper\GL12852-PA 213 GL12852-PA 50..211 28..164 319 42 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26930-PA 407 GA26930-PA 1..407 1..387 1954 91.9 Plus
Dpse\GA26930-PB 368 GA26930-PB 1..368 21..387 1875 96.2 Plus
Dpse\GA26930-PC 387 GA26930-PC 1..387 21..387 1843 91.5 Plus
Dpse\GA19849-PA 387 GA19849-PA 50..385 28..383 727 40.9 Plus
Dpse\GA27810-PA 369 GA27810-PA 4..315 29..382 483 33.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12142-PA 406 GM12142-PA 1..406 1..387 2029 95.3 Plus
Dsec\GM24850-PA 388 GM24850-PA 50..386 28..383 726 40.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12902-PA 388 GD12902-PA 50..386 28..383 726 40.8 Plus
Dsim\GD15073-PA 103 GD15073-PA 1..103 285..387 539 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22998-PA 405 GJ22998-PA 1..405 1..387 1937 91.6 Plus
Dvir\GJ13347-PA 371 GJ13347-PA 40..369 28..383 692 39.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13119-PA 405 GK13119-PA 1..405 1..387 1950 91.6 Plus
Dwil\GK17570-PA 388 GK17570-PA 50..386 28..383 726 40.8 Plus
Dwil\GK18441-PA 310 GK18441-PA 4..296 28..362 569 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23373-PA 406 GE23373-PA 1..406 1..387 2029 95.3 Plus
Dyak\GE21218-PA 388 GE21218-PA 50..386 28..383 726 40.8 Plus

LD38861.hyp Sequence

Translation from 269 to 1432

> LD38861.hyp
MLLQRNKLGSVRPPKRCRSDMDNTSTSDIVIINGNSHPDLANMVAERMGI
KNGGCSVFHKSNRETIVEISDSVRGKDIYIIQTGTKDANNNIMELLIMAY
ACKTSSARSIVGVIPYLPYSKQCKMRKRGCIVSKLLAKMMCTSGLTHIIT
MDLHQKEIQGFFDIPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGVAK
KANSYAERLRLGLAVIHGEQKETDADEVDGRYSPPPTRNSTPQHAPTSSA
RQRTTSVSVGVPEHIVKVKPPLTIVGDVSGRIAIMVDDLIDDVQAFVAAA
EMLKENGACKIYVLATHGLLSSDAPRQLDESPIDEIVVTNTIPHEIQKLQ
CHKIKTIDISILIAEAIRRIHNKESMSYLFRNVTLED*

LD38861.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2246-PG 387 CG2246-PG 1..387 1..387 1975 100 Plus
CG2246-PB 387 CG2246-PB 1..387 1..387 1975 100 Plus
CG2246-PJ 385 CG2246-PJ 1..385 3..387 1947 98.7 Plus
CG2246-PH 406 CG2246-PH 1..406 1..387 1945 95.3 Plus
CG2246-PA 406 CG2246-PA 1..406 1..387 1945 95.3 Plus