Clone LD38919 Report

Search the DGRC for LD38919

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:389
Well:19
Vector:pOT2
Associated Gene/TranscriptUbqn-RA
Protein status:LD38919.pep: gold
Preliminary Size:3246
Sequenced Size:3005

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14224 2001-01-01 Release 2 assignment
CG14224 2002-06-19 Blastp of sequenced clone
CG14224 2003-01-01 Sim4 clustering to Release 3
CG14224 2008-04-29 Release 5.5 accounting
CG14224 2008-08-15 Release 5.9 accounting
Ubqn 2008-12-18 5.12 accounting

Clone Sequence Records

LD38919.complete Sequence

3005 bp (3005 high quality bases) assembled on 2002-06-19

GenBank Submission: AY128447

> LD38919.complete
AGAAAGTGACGAATTACTTTTCATCAAATGGGAAATAATTTAGGGTGAAA
ACACGTATATATTCGGAACACATTTAAATTACAGACGTGATAACATCTCG
AAAGAACCAGCTACATCGGTGCAAATTAAGCTAAACGAGAACACCGCAAA
TACACCATCGAAATGGCGGAAGGCGGCAGCAAGCGCATCAACGTGGTTGT
AAAAACGCCAAAGGACAAGAAAACGGTCGAAGTTGACGAAGATTCTGGAA
TAAAAGATTTCAAAATTCTGGTTGCACAAAAGTTCGAGGCGGAGCCCGAG
CAGCTCGTGCTCATTTTTGCCGGCAAAATTATGAAGGACACGGACACCCT
TCAGATGCACAACATCAAGGACAACCTGACGGTGCATCTGGTGATTAAGG
CGCCGACGCGCAACAACGAGCAGCCGGCCCGACAGCCGGCTGACGTGCGC
CAAACGCCCTTTGGCCTCAATCAATTCGGTGGCCTGGCCGGAATGGAGGC
ACTTGGAGCCGGATCGAACACGTTCATGGATCTGCAGGCGCGCATGCAGA
ACGAGCTGCTCAACAATGGCGACATGCTGCGCTCCCTGATGGACAACCCG
ATGGTGCAGCAGATGATGAATAATCCGGATACCATGCGTCAGCTTATCAC
GTCCAATCCGCAAATGCATGACCTGATGCAGCGCAACCCCGAGATCTCGC
ATATGCTTAACAATCCGGACCTGCTGCGCCAGACGATGGAGCTGGCCCGC
AATCCCTCGATGTTGCAGGAGCTGATGCGTTCGCACGACCGCGCCATGTC
GAATCTGGAGTCGGTGCCGGGCGGCTATAGCGCCCTGCAGCGCATCTACC
GCGATATTCAGGAGCCAATGATGAACGCGGCCACGGAATCCTTTGGTCGC
AACCCCTTTGCCGGCCTGGTCGACGGCGGCGGTTCAGGAGCCGGCAACAA
CCCGCAGCAGGGCACCGAGAACCGCAATCCCCTGCCGAATCCATGGGGCG
GTGCCAATTCGGGAACCAATGGAACAGTCGGTGGCTCCGGCGCCGGCAAT
CCGACGGGGGATCTGCCGCCGAACAATGTGCTCAACACGCCGGCCATGCG
AAGCCTGCTCCAGCAGATGGCCGACAATCCAGCCATGATGCAGAACCTGC
TGAACGCGCCCTACACGCGTTCCATGATGGAGTCCATGTCACAGGACCCG
GACATGGCCGCGCGCTTGCTGAGCAGCAGTCCGCTCATGTCTAACAATCC
CGCCCTGCAGGAGCAGGTGCGTCAGATGATGCCGCAGTTTATGGCCCAAA
TGCAGAACCCCGAGGTGATGAACATGCTGACCAATCCGGATGCAATGAAC
GCTATCCTGCAGATCCAGCAGGGCATGGAGCAGCTGCGCAGCGCGGCCCC
AGGTCTCGTTGGCACCCTGGGCATTCCACCGCCACCACCGGGTGCCGGCA
CCGGAACGAATCCAGCCAGCGGCGATGGGAGCGGGGGCAACAGCGGTGCC
AGCACCAACAATGTTTCGCCAAGCAGCGGCCTCAACGCCGGCACCGGCAC
TCCAAACCTGGCCCCGGGCGGTGGTCCCAACGCGCAGCTCTTCAACGACT
TCATGATGCGCATGCTCAACGGGATGTCGAACAACGCGGACAACACACAG
CCGCCGGAGGTGCGCTACCAGTCGCAGCTGGAGCAGCTGAACGCCATGGG
CTTTGTCAACCGTGATGCCAACTTGCAGGCTCTGATCGCTACCTTCGGGG
ACATCAATGCGGCGGTAGAGCGACTGCTGTCCCTCAACCAGTTGTCCTTG
AGTTAACAAGGCTAAGCCATAGCCATAACCAAACTGTACACAACCTGTCT
ATATATCTACGAACTACAACTACTATATATACCACTACGGCCCTGGAGAA
CGCGAATGAGAACACGACTAGTTAGGAGGACAGGTCCTAAACCCAAACAC
ACACCCTCCGCCAAAAAATTCCACGGTCAGCGCTGCTGATCGCTTGTTTC
CCCATCAAGCCGGAAATGTCAGGAATCCATCATAGCCACATGCCAACATA
CCAACACCCCCAAGACACAAAAAGATGGCTCCAAACGAGCATAGTTGCCT
CGAGATCGGAGAGATACTAGATATAGGTGGGTGATATGAATGACGCCGGT
GAGAATGTTAGATAGGGATCGCATACCAAAGTGTTAGCACTTTCGTAGTT
GATATCAGATTTTTTTTTTTTTTAAATAATTTACATTTCGTGAGCTCGGA
GAATCCTTTAAGCGGAAATGCGTTAGCCGAAAACCAACTTGAATATGCAT
ACTTTGCTCACGTAATGCATAGTTTTGCACGCCCAACAACTTCAATCGAA
ATACTTAACGCATTTCTTTATCGGAGAACTTCGTTAATTTTCAATAAAGT
TAAGCGGGAATGTGCACTTTTGTCATTGATAATGTAATAACTATTTTGTC
GCCAACAGATGCGAATTCCAGTTTTGTGTTTAAGAAAAAAGAATCGGTAC
AGAGATCAGAGGCGTAGTATATATCCTGTGTTCTGGTCAGGCAGTTTAGT
TTTAGTCGGGTGCTAGTGGGCGTGGGCTATAGCCGCAGTCCTTCTGACTC
CCCCCCCCCTCCATTTCTCGCGATCGGAAAACGTTCTGGAAATTGCAAAC
AACTGCAAACAGGACAAACGTACAGTAGATATCGGCTATATGCAAAGACG
ACACTGTCTTGGGGGAATCCTAACATACGCGCGAGTATGCTGTAGTCAAT
CAAAATGTTTATCGATTCGTTAATATAAGAGCAATCTCCAAGCGTTATTT
ATCCCACATCCCGTTCAGAGGAATACAAATGTAAAAAGTTGTTGCACACA
AGCGATTTGCATGCTAACGATATCTACTGTAAGTTAATGTGTGTATATAG
GTATATATATATGTATATACATATATATATATATATCAAAATATTCCAAG
GTGTTAACAAAAGACGTAAAACTATAAAACAAAAAAAAAAAAAAAAAAAA
AAAAA

LD38919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn.a 3657 Ubqn.a 158..3161 1..3004 15020 100 Plus
Ubqn-RA 3153 Ubqn-RA 158..3153 1..2996 14980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19573230..19574700 259..1729 7355 100 Plus
chrX 22417052 chrX 19574779..19576012 1729..2980 5855 98.4 Plus
chrX 22417052 chrX 19572629..19572886 1..258 1290 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19684440..19685910 259..1729 7355 100 Plus
X 23542271 X 19685989..19687264 1729..3004 6380 100 Plus
X 23542271 X 19683839..19684096 1..258 1290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19692538..19694008 259..1729 7355 100 Plus
X 23527363 X 19694087..19695362 1729..3004 6380 100 Plus
X 23527363 X 19691937..19692194 1..258 1290 100 Plus
Blast to na_te.dros performed 2019-03-15 22:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1981..2074 82..174 124 66 Plus

LD38919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:19 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19572629..19572886 1..258 100 -> Plus
chrX 19573230..19574700 259..1729 100 -> Plus
chrX 19574780..19576007 1730..2975 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:14 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 1..1644 163..1806 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:19:46 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 1..1644 163..1806 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:11 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 1..1644 163..1806 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:10:48 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
CG14224-RA 1..1644 163..1806 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:53 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 1..1644 163..1806 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:45:17 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 92..3071 1..2980 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:19:46 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 92..3071 1..2980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:11 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 32..3011 1..2980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:10:49 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
CG14224-RA 92..3071 1..2980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:53 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
Ubqn-RA 32..3011 1..2980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:19 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
X 19683839..19684096 1..258 100 -> Plus
X 19684440..19685910 259..1729 100 -> Plus
X 19685990..19687240 1730..2980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:19 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
X 19683839..19684096 1..258 100 -> Plus
X 19684440..19685910 259..1729 100 -> Plus
X 19685990..19687240 1730..2980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:19 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
X 19683839..19684096 1..258 100 -> Plus
X 19684440..19685910 259..1729 100 -> Plus
X 19685990..19687240 1730..2980 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:11 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19577872..19578129 1..258 100 -> Plus
arm_X 19578473..19579943 259..1729 100 -> Plus
arm_X 19580023..19581273 1730..2980 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:43:10 Download gff for LD38919.complete
Subject Subject Range Query Range Percent Splice Strand
X 19691937..19692194 1..258 100 -> Plus
X 19692538..19694008 259..1729 100 -> Plus
X 19694088..19695338 1730..2980 100   Plus

LD38919.pep Sequence

Translation from 162 to 1805

> LD38919.pep
MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVL
IFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPF
GLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQ
MMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSM
LQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFA
GLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGD
LPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAA
RLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQ
IQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN
VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEV
RYQSQLEQLNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLS*

LD38919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20422-PA 554 GF20422-PA 1..544 1..537 2419 88.3 Plus
Dana\GF18215-PA 398 GF18215-PA 7..235 9..278 256 26.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19246-PA 552 GG19246-PA 1..542 1..537 2398 95.2 Plus
Dere\GG12406-PA 345 GG12406-PA 7..232 9..278 249 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12490-PA 551 GH12490-PA 1..541 1..537 2271 86.4 Plus
Dgri\GH19051-PA 333 GH19051-PA 2..234 5..289 197 22.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-PB 547 CG14224-PB 1..547 1..547 2828 100 Plus
Ubqn-PA 547 CG14224-PA 1..547 1..547 2828 100 Plus
CG31528-PA 344 CG31528-PA 7..232 9..278 273 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11108-PA 557 GI11108-PA 1..547 1..537 2319 85.7 Plus
Dmoj\GI24345-PA 409 GI24345-PA 2..243 5..278 245 25.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18264-PA 558 GL18264-PA 1..558 1..547 2326 87 Plus
Dper\GL21467-PA 308 GL21467-PA 7..243 9..286 205 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12838-PA 558 GA12838-PA 1..558 1..547 2322 87 Plus
Dpse\GA16302-PA 308 GA16302-PA 7..243 9..286 177 25.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22982-PA 546 GM22982-PA 1..546 1..547 2776 98.5 Plus
Dsec\GM10755-PA 344 GM10755-PA 7..232 9..278 273 26.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15764-PA 183 GD15764-PA 1..183 365..547 908 98.4 Plus
Dsim\GD19730-PA 344 GD19730-PA 7..232 9..278 276 26.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15961-PA 555 GJ15961-PA 1..545 1..537 2254 86.4 Plus
Dvir\GJ10430-PA 392 GJ10430-PA 3..243 6..278 232 24.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25071-PA 572 GK25071-PA 1..562 1..537 2294 83.6 Plus
Dwil\GK13535-PA 373 GK13535-PA 5..230 7..278 267 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15866-PA 552 GE15866-PA 1..542 1..537 2442 94.3 Plus

LD38919.hyp Sequence

Translation from 162 to 1805

> LD38919.hyp
MAEGGSKRINVVVKTPKDKKTVEVDEDSGIKDFKILVAQKFEAEPEQLVL
IFAGKIMKDTDTLQMHNIKDNLTVHLVIKAPTRNNEQPARQPADVRQTPF
GLNQFGGLAGMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPMVQQ
MMNNPDTMRQLITSNPQMHDLMQRNPEISHMLNNPDLLRQTMELARNPSM
LQELMRSHDRAMSNLESVPGGYSALQRIYRDIQEPMMNAATESFGRNPFA
GLVDGGGSGAGNNPQQGTENRNPLPNPWGGANSGTNGTVGGSGAGNPTGD
LPPNNVLNTPAMRSLLQQMADNPAMMQNLLNAPYTRSMMESMSQDPDMAA
RLLSSSPLMSNNPALQEQVRQMMPQFMAQMQNPEVMNMLTNPDAMNAILQ
IQQGMEQLRSAAPGLVGTLGIPPPPPGAGTGTNPASGDGSGGNSGASTNN
VSPSSGLNAGTGTPNLAPGGGPNAQLFNDFMMRMLNGMSNNADNTQPPEV
RYQSQLEQLNAMGFVNRDANLQALIATFGDINAAVERLLSLNQLSLS*

LD38919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ubqn-PB 547 CG14224-PB 1..547 1..547 2828 100 Plus
Ubqn-PA 547 CG14224-PA 1..547 1..547 2828 100 Plus
CG31528-PA 344 CG31528-PA 7..232 9..278 273 27.3 Plus