Clone LD39025 Report

Search the DGRC for LD39025

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:390
Well:25
Vector:pOT2
Associated Gene/TranscriptCG8483-RA
Protein status:LD39025.pep: gold
Preliminary Size:2153
Sequenced Size:1890

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8483 2001-01-01 Release 2 assignment
CG8483 2001-07-04 Blastp of sequenced clone
CG8483 2003-01-01 Sim4 clustering to Release 3
CG8483 2008-04-29 Release 5.5 accounting
CG8483 2008-08-15 Release 5.9 accounting
CG8483 2008-12-18 5.12 accounting

Clone Sequence Records

LD39025.complete Sequence

1890 bp (1890 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051901

> LD39025.complete
ACGCCTTCAAGTCTAGCTGCACGTACACGAGAGTGGAGTTGGAGTCGTCG
GCTTTTTTTCGTGGCGCTCTTTTTTTCGGTTTTCCACATTTCATCCACCA
CGCCCACCGTTCAAAATTGTGATACAAAAAATCCTAGCAAAATTGCAAAT
CTATAGTGTATGGAATACCAGATATAACTCTGTCATTTATGAAAAGGTTA
TATTTGAAAAATTAACAAAGTGCTTAAATCAATAAAAAAAAAAGAAGAAA
TCAACGTGTTGTTTAAAACCCAATTTTATATAACCAAAATGATGCAGCCA
AGTGCGGTATTACTAACCACAATTATGATCATCTCCTGCGAAGTGGCATT
CGCCTGCAATGGAAAGATAATTGCATCGGGCATCACGGCGGAAGAGAGAT
CAATCATCTTGCAGGAGCACAATCGCCTCCGGCAGATCGTGGCCACGGGT
CGCTATCCAGGCCAGCCGGGTGCCGAGAATATGCGGGAGATCGTCTGGGA
CGATGAGCTGGCCGCCAGAGCTCAGAAATGGGCTGACAACTGCCAGTTCC
GTCACGATCCGCACCGTACAATAAATCGCTTTACGATGGGCCAGAATCTG
GCCATCATCTGGAGTACGGCGCCTTTGGATGCCGATGACGGTGATTTCCC
CTCTCGCATCCAGAGTTGGTTTAACGAGGTGCAGAAGTACTCCTTCGGGG
ACGCCTGGTCCCCCAAAACTGGACACTATTCCCAACTGGTTTGGGGTGAG
ACCAGCTTGGTGGGCTGTGGATATGCGGAGTACAAGGATACCAGCAAGTA
CAACAAGCTCTACGTCTGCAATTATGGGCCTGGTGGCAATGTGGTGGGCT
ACAATCCCTATGAGGTTGGAAAGCCATCGTGCTCCACATACGGCATGAAG
CCTTCGTCCCGCTACCAAGGACTCTGCGCCGCTCCCGGATCCTCGCCAGC
GGCCAACAGCGTTTACGGAGCAAACACAATTGAAACGTATGAGTACGGCT
ACAACAGCAGCCCTTCCAGTCAAACCGCCAATAACAATCCGCCGACTAAC
AACATTAACAAGAGCCAGTTCAGCTATAACCAACCAAGACCCAAGCCCGT
CCAAACCATCAATCCAAATCCCTCCCCATTCAACCCACAGGCAGCGGTAC
CATCAGCGTCGACCTTCGGCGGCAGTTCGTTTGGCAGCGCCTCGAGGGGC
GGCAGCCACGCCTACACCACGGACCCATCGCAGTCGGCAGGCCGCTATAA
GCACAAGCTCGAGGCGTATCGGCCAAGTGCGGCCGAGTTCGAGAAGTCCG
TACACAAGCATACCATACTACGCACCTATATAGAGCAGAATCAACAGAGG
CAGGATCAGCAGCAGCAGCAACAACAGAAGGAACAGGATCAGCAGCAGCA
GCAGCCAGAGCCCTCGAGCACCAAGAAACCCAGTCGTGGATGGAGCCTTC
TAACCTGGCGTGGTTGAGCTTTAAATCTTGCCAATCCATTTGCCAATCTA
AAATGCCGCTCAATGTATTAGGCCATTAATAGCTACTATGTAGTGCCATT
AGCCAACCACCAGGATCCATCGTCATCTCTAACACCTTCTGTCCATCGCC
GTGAAACCCCTAGCAAATCCTATTTAAATACCCCAACAATTTGCCATATG
AGCTGAAGTAGTTTCACTTCTTTGGAATTCCGGCTTGTTGGTGCCAGAAC
ATAGAAGAAGTGCTGGCGGCGGACGATTCATGCCACAGACGAATATTTGT
ATCAAATGTTTGCCACCCACCAAAACTGTCATCCTGTTAAAACCAACCAA
TCGGCATTCAACATCGATCAGCTAGTTGTAGTATTGTGTTTAATAAAACA
AGAATATTGATTTGTAAATTAAAAAAAAAAAAAAAAAAAA

LD39025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-RA 1897 CG8483-RA 23..1893 1..1872 9320 99.9 Plus
CG8483.a 1727 CG8483.a 1..992 1..993 4925 99.8 Plus
CG8483.b 1743 CG8483.b 23..1008 1..987 4895 99.8 Plus
CG8483.a 1727 CG8483.a 992..1723 1141..1872 3660 100 Plus
CG8483.b 1743 CG8483.b 1008..1739 1141..1872 3660 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9033877..9034914 1870..833 5190 100 Minus
chr3R 27901430 chr3R 9039224..9039597 373..1 1775 98.9 Minus
chr3R 27901430 chr3R 9035194..9035452 833..575 1295 100 Minus
chr3R 27901430 chr3R 9036020..9036221 574..373 1010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13208752..13209791 1872..833 5200 100 Minus
3R 32079331 3R 13214094..13214465 373..1 1815 99.7 Minus
3R 32079331 3R 13210071..13210329 833..575 1295 100 Minus
3R 32079331 3R 13210897..13211098 574..373 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12949583..12950622 1872..833 5200 100 Minus
3R 31820162 3R 12954925..12955296 373..1 1825 99.7 Minus
3R 31820162 3R 12950902..12951160 833..575 1295 100 Minus
3R 31820162 3R 12951728..12951929 574..373 1010 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:04:38 has no hits.

LD39025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:28 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9033877..9034913 834..1870 95 <- Minus
chr3R 9035194..9035452 575..833 100 <- Minus
chr3R 9036020..9036220 374..574 100 <- Minus
chr3R 9039224..9039597 1..373 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:15 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 289..1467 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:25 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 289..1467 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:12 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 289..1467 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:54 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 289..1467 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:27 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 289..1467 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:10 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1869 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:25 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1869 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:12 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1869 1..1870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:54 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1869 1..1870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:27 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1869 1..1870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:28 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13208754..13209790 834..1870 100 <- Minus
3R 13210071..13210329 575..833 100 <- Minus
3R 13210897..13211097 374..574 100 <- Minus
3R 13214094..13214465 1..373 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:28 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13208754..13209790 834..1870 100 <- Minus
3R 13210071..13210329 575..833 100 <- Minus
3R 13210897..13211097 374..574 100 <- Minus
3R 13214094..13214465 1..373 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:28 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13208754..13209790 834..1870 100 <- Minus
3R 13210071..13210329 575..833 100 <- Minus
3R 13210897..13211097 374..574 100 <- Minus
3R 13214094..13214465 1..373 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:12 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9034476..9035512 834..1870 100 <- Minus
arm_3R 9035793..9036051 575..833 100 <- Minus
arm_3R 9036619..9036819 374..574 100 <- Minus
arm_3R 9039816..9040187 1..373 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:03 Download gff for LD39025.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12951728..12951928 374..574 100 <- Minus
3R 12954925..12955296 1..373 99   Minus
3R 12949585..12950621 834..1870 100 <- Minus
3R 12950902..12951160 575..833 100 <- Minus

LD39025.pep Sequence

Translation from 288 to 1466

> LD39025.pep
MMQPSAVLLTTIMIISCEVAFACNGKIIASGITAEERSIILQEHNRLRQI
VATGRYPGQPGAENMREIVWDDELAARAQKWADNCQFRHDPHRTINRFTM
GQNLAIIWSTAPLDADDGDFPSRIQSWFNEVQKYSFGDAWSPKTGHYSQL
VWGETSLVGCGYAEYKDTSKYNKLYVCNYGPGGNVVGYNPYEVGKPSCST
YGMKPSSRYQGLCAAPGSSPAANSVYGANTIETYEYGYNSSPSSQTANNN
PPTNNINKSQFSYNQPRPKPVQTINPNPSPFNPQAAVPSASTFGGSSFGS
ASRGGSHAYTTDPSQSAGRYKHKLEAYRPSAAEFEKSVHKHTILRTYIEQ
NQQRQDQQQQQQQKEQDQQQQQPEPSSTKKPSRGWSLLTWRG*

LD39025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17401-PA 396 GF17401-PA 1..394 1..391 1734 85.2 Plus
Dana\GF22388-PA 311 GF22388-PA 94..284 32..213 195 28.1 Plus
Dana\GF20496-PA 256 GF20496-PA 53..253 23..229 188 28.2 Plus
Dana\GF12099-PA 263 GF12099-PA 70..254 40..214 163 29.6 Plus
Dana\GF19647-PA 218 GF19647-PA 15..207 32..215 162 30.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17074-PA 396 GG17074-PA 1..396 1..392 1743 93.2 Plus
Dere\GG18928-PA 253 GG18928-PA 62..241 39..214 204 33.2 Plus
Dere\GG19461-PA 308 GG19461-PA 91..281 32..213 204 28.6 Plus
Dere\GG19449-PA 256 GG19449-PA 54..245 32..215 165 29.4 Plus
Dere\GG20780-PA 261 GG20780-PA 61..252 33..214 165 29.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19187-PA 391 GH19187-PA 1..391 2..392 1421 72.3 Plus
Dgri\GH24944-PA 305 GH24944-PA 89..278 32..213 228 30.7 Plus
Dgri\GH12214-PA 256 GH12214-PA 54..245 32..215 190 32 Plus
Dgri\GH12878-PA 260 GH12878-PA 50..249 18..215 188 31.1 Plus
Dgri\GH21186-PA 270 GH21186-PA 67..256 36..215 180 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-PA 392 CG8483-PA 1..392 1..392 2118 100 Plus
CG9400-PA 308 CG9400-PA 81..281 22..213 192 27.7 Plus
CG32679-PA 254 CG32679-PA 63..250 39..229 190 32.2 Plus
Ag5r-PC 256 CG9538-PC 42..256 20..226 164 27.2 Plus
Ag5r-PB 256 CG9538-PB 42..256 20..226 164 27.2 Plus
Ag5r-PA 256 CG9538-PA 42..256 20..226 164 27.2 Plus
CG17974-PA 259 CG17974-PA 60..250 34..214 161 28.4 Plus
CG9822-PA 263 CG9822-PA 64..251 37..214 153 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24221-PA 413 GI24221-PA 1..413 1..392 1362 66.5 Plus
Dmoj\GI15747-PA 256 GI15747-PA 54..244 32..214 201 33.3 Plus
Dmoj\GI15745-PA 257 GI15745-PA 54..244 32..214 179 30.6 Plus
Dmoj\GI20472-PA 267 GI20472-PA 67..255 36..214 179 31.1 Plus
Dmoj\GI15744-PA 256 GI15744-PA 59..248 32..213 167 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23137-PA 289 GL23137-PA 1..286 1..279 1228 80.6 Plus
Dper\GL22646-PA 302 GL22646-PA 81..275 26..213 198 28.8 Plus
Dper\GL11847-PA 263 GL11847-PA 61..250 36..215 173 31.6 Plus
Dper\GL10419-PA 289 GL10419-PA 64..268 33..217 170 27.7 Plus
Dper\GL20410-PA 254 GL20410-PA 44..244 22..214 169 27.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21107-PA 416 GA21107-PA 1..416 1..392 1542 76.3 Plus
Dpse\GA23354-PA 263 GA23354-PA 72..252 39..215 207 34.4 Plus
Dpse\GA21762-PA 301 GA21762-PA 80..274 26..213 198 28.8 Plus
Dpse\GA22059-PA 263 GA22059-PA 61..250 36..215 173 31.6 Plus
Dpse\GA14749-PA 261 GA14749-PA 61..252 33..214 171 30.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25958-PA 394 GM25958-PA 1..394 1..392 2067 98 Plus
Dsec\GM17559-PA 308 GM17559-PA 91..303 32..232 200 28 Plus
Dsec\GM11319-PA 237 GM11319-PA 46..225 39..214 198 33.2 Plus
Dsec\GM15725-PA 258 GM15725-PA 58..249 33..214 159 28.3 Plus
Dsec\GM12039-PA 256 GM12039-PA 54..245 32..215 154 27.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20518-PA 394 GD20518-PA 1..394 1..392 2084 98.5 Plus
Dsim\GD16039-PA 254 GD16039-PA 63..243 39..215 202 33 Plus
Dsim\GD15853-PA 308 GD15853-PA 91..303 32..232 200 28 Plus
Dsim\GD25202-PA 258 GD25202-PA 58..249 33..214 159 28.3 Plus
Dsim\GD25203-PA 263 GD25203-PA 64..251 37..214 152 28.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10792-PA 402 GJ10792-PA 16..402 15..392 1372 70.8 Plus
Dvir\GJ22140-PA 283 GJ22140-PA 65..265 37..217 195 30 Plus
Dvir\GJ18491-PA 324 GJ18491-PA 133..321 39..240 194 30.2 Plus
Dvir\GJ18606-PA 256 GJ18606-PA 54..255 32..232 183 31.3 Plus
Dvir\GJ22322-PA 262 GJ22322-PA 62..250 36..214 172 30.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22774-PA 380 GK22774-PA 1..380 1..392 1402 73.9 Plus
Dwil\GK10315-PA 296 GK10315-PA 82..291 32..232 201 26.1 Plus
Dwil\GK14741-PA 240 GK14741-PA 38..233 28..214 200 28.3 Plus
Dwil\GK25699-PA 253 GK25699-PA 35..241 18..214 186 31.2 Plus
Dwil\GK23199-PA 287 GK23199-PA 65..279 37..232 170 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24462-PA 392 GE24462-PA 1..392 1..392 1816 93.6 Plus
Dyak\GE16115-PA 308 GE16115-PA 91..281 32..213 216 29.2 Plus
Dyak\GE15398-PA 253 GE15398-PA 62..241 39..214 209 33.5 Plus
Dyak\Ag5r-PA 256 GE16102-PA 54..245 32..215 167 31 Plus
Dyak\GE13718-PA 262 GE13718-PA 62..253 33..214 160 28.9 Plus

LD39025.hyp Sequence

Translation from 288 to 1466

> LD39025.hyp
MMQPSAVLLTTIMIISCEVAFACNGKIIASGITAEERSIILQEHNRLRQI
VATGRYPGQPGAENMREIVWDDELAARAQKWADNCQFRHDPHRTINRFTM
GQNLAIIWSTAPLDADDGDFPSRIQSWFNEVQKYSFGDAWSPKTGHYSQL
VWGETSLVGCGYAEYKDTSKYNKLYVCNYGPGGNVVGYNPYEVGKPSCST
YGMKPSSRYQGLCAAPGSSPAANSVYGANTIETYEYGYNSSPSSQTANNN
PPTNNINKSQFSYNQPRPKPVQTINPNPSPFNPQAAVPSASTFGGSSFGS
ASRGGSHAYTTDPSQSAGRYKHKLEAYRPSAAEFEKSVHKHTILRTYIEQ
NQQRQDQQQQQQQKEQDQQQQQPEPSSTKKPSRGWSLLTWRG*

LD39025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-PA 392 CG8483-PA 1..392 1..392 2118 100 Plus
CG9400-PA 308 CG9400-PA 81..281 22..213 192 27.7 Plus
CG32679-PA 254 CG32679-PA 63..250 39..229 190 32.2 Plus
Ag5r-PC 256 CG9538-PC 42..256 20..226 164 27.2 Plus
Ag5r-PB 256 CG9538-PB 42..256 20..226 164 27.2 Plus