Clone LD39166 Report

Search the DGRC for LD39166

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:391
Well:66
Vector:pOT2
Associated Gene/TranscriptHs6st-RA
Protein status:LD39166.pep: gold
Preliminary Size:2927
Sequenced Size:2656

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12249 2001-01-01 Release 2 assignment
CG4451 2001-01-01 Release 2 assignment
CG11683 2001-01-01 Release 2 assignment
CG17188 2001-01-01 Release 2 assignment
CG4451 2001-07-04 Blastp of sequenced clone
CG4451 2003-01-01 Sim4 clustering to Release 3
Hs6st 2008-04-29 Release 5.5 accounting
Hs6st 2008-08-15 Release 5.9 accounting
Hs6st 2008-12-18 5.12 accounting

Clone Sequence Records

LD39166.complete Sequence

2656 bp (2656 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051902

> LD39166.complete
AAGAATGCGGACGTTGACGCTGGTACCGCGTCGTTTTGCCAAAATAATTC
GTAAAAAATATACGCAAAACGCTTAGAAAGTGTCAATTAACTAAACATTA
GCTATTGAGCAGTGCAAGTGCAGGAAAAACGATCGCAGAAATAGCCGAAA
ACACATGAAAGTGCGAATTGCGGGCTTTTTTGTGGCTGGCACAGAATGTG
TGGCACAAAGCGGAAAGCGCGCTAATTGAGCGTGCGAGCGCCTGAAACGC
AGAGAAATGTAAATAAATAAACGTGTGACGCCGCGACAATTGTGAAAAGT
GCACAAACACGACGTTTGGCAAGTGAAAAGCACTGAAAGCCGAGAGACAA
GGAAAACCCATTTCCGCGCCAAGTGCAATGGGCGAAGGTGTTCCCATTTT
TCGAGTTCTTATCGGGCAGCGACTGAAGTATGATTGAGTTGGCCTCGCCT
CCGATTCGCGTCTGGTTCTCGTTGCGCTAGGCCGATACGGATACCCGCTT
GGACTCCACTCGGGTGGACCCTTGTTGGACCTTTAGTGCGATTTTCGAGG
GAGGCCAGGGAATGGAACATGCCCGGGGATATGCATAAGAACGTATCTGT
TCAAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAA
TCAAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGC
CTCTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGA
TCAGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATA
TCCTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGC
AATGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCAC
GGCCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAG
GGTTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGAT
GGCCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTC
GTTTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGT
GCCAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAG
AACTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGC
CGACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACG
AAGGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAA
CCCATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCAC
CTGGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCG
AGCTGCCCGCTTGCTACAAGGGCAAGGACTGGCTGGACGTGGATCTTGAC
CAGTTCGCCGGCTGCGAGTCCAATCTGGCGGCTAACCGCCAGACCCGCAT
GCTGGCCGATCTCGCCCTCGTCGGCTGCTACAACAAGTCTTCGATGCCCG
CTCATGAGCGGGATCGCGTGATGCTGGCCAGCGCAAAGCGCAATCTGGCC
GCCATGGCCTACTTTGGACTGACTGAATATCAAAAGATGTCCCAGTACAT
TTTCGAGGAGACTTTCAACCTGCGTTTCGCCATTCCCTTCGAGCAGCACA
ACACCACAATCTCGGCGACTGCTGTCCAGAATCTTCGACCCGACCAGAAG
CGTCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGC
CAAGACTTTGCTCTTTCAGCGTTTCGAACATCTGAAGGCAAAGGACACAA
ACTTTGAGCAGCGCTACGCCAATCTGGGCAACATCTACTTCAAGCAGGGC
GTCACGGAATTCAACTGGGACAGCAACGTGGAGGATGGGCTCAGCACGGA
TCATTGAACTCGAAACCAAATATTACCGATTAGGAACTAGATGTAGGACA
AACCAACTCATAAATATGTAGCTGGGAAGGGCGGAATATGGGGGGGTGGT
CACTAAGGTTACCGATACGCAGAAGCATCAGCATAAAAATCAACCGAAGG
ACTTTAAACTAGCGATTAAGCATAATGTTAATTAAGCAGACAAAAAACAT
CTAGCGGACTTGGCTTGTTTCAATCGAACGTAACACAACTAAAGGACAAA
CGAGCAAAATCTCAGAGCGTATATTATCTCTAAACCTAAACCTAAGCAAA
ACTATAAAATCTATGACTATAACTATACTCCTTGCTTAAGTCGCGCACCG
AAAATTTTAGAAAATGTAAATACTTTGCATAAAATGTTTATTTCTTAAAC
GCAAGTTCCCTTTTCAAACATTGTGAGGTGCGAGCCCACTCGAATTCACT
TTTCACCTTCACAACGCACCCACACTACTACACCGCCATAAATTAGATTA
ATTAATTAATTTGTAATACGTAGCTTTTCGTTTATTGTTACGCCAAGTCT
CTGCAAAGCCAAATCCACACTTAGTCTAAGAGCATAGTGCTTGGAAAATG
TTTTCGATCCAATAACGCATTTATTTTATTTTACTACTAGACATCACTGT
AAATACTGCAGAATAAAGTTAAACAAAACAATTGAAAAAAAAAAAAAAAA
AAAAAA

LD39166.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st.a 3127 Hs6st.a 56..2691 1..2636 13180 100 Plus
Hs6st-RA 3159 Hs6st-RA 81..2716 1..2636 13180 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15753638..15754451 2634..1821 4025 99.6 Minus
chr3R 27901430 chr3R 15761395..15761945 1636..1086 2620 98.4 Minus
chr3R 27901430 chr3R 15830169..15830596 757..330 2110 99.5 Minus
chr3R 27901430 chr3R 15762017..15762352 1087..752 1680 100 Minus
chr3R 27901430 chr3R 15832097..15832426 330..1 1635 99.7 Minus
chr3R 27901430 chr3R 15761147..15761333 1821..1635 920 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19929718..19930533 2636..1821 4080 100 Minus
3R 32079331 3R 19937502..19938052 1636..1086 2755 100 Minus
3R 32079331 3R 20006232..20006659 757..330 2140 100 Minus
3R 32079331 3R 19938124..19938459 1087..752 1680 100 Minus
3R 32079331 3R 20008160..20008489 330..1 1650 100 Minus
3R 32079331 3R 19937254..19937440 1821..1635 935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19670549..19671364 2636..1821 4080 100 Minus
3R 31820162 3R 19678333..19678883 1636..1086 2755 100 Minus
3R 31820162 3R 19747063..19747490 757..330 2140 100 Minus
3R 31820162 3R 19678955..19679290 1087..752 1680 100 Minus
3R 31820162 3R 19748991..19749320 330..1 1650 100 Minus
3R 31820162 3R 19678085..19678271 1821..1635 935 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:22:17 has no hits.

LD39166.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:23:11 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15753638..15754450 1822..2634 99 <- Minus
chr3R 15761147..15761331 1637..1821 99 <- Minus
chr3R 15761395..15761943 1088..1636 98 <- Minus
chr3R 15762017..15762349 755..1087 100 <- Minus
chr3R 15830172..15830596 330..754 99 <- Minus
chr3R 15832098..15832426 1..329 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:46:42 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1..1389 569..1957 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:15 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1..1389 569..1957 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:27:10 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1..1389 569..1957 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:36:59 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1..1389 569..1957 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:41 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 34..2667 1..2634 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:15 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 34..2667 1..2634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:10 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 24..2657 1..2634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:44 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 34..2667 1..2634 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:36:59 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 24..2657 1..2634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:11 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19929720..19930532 1822..2634 100 <- Minus
3R 19937254..19937438 1637..1821 100 <- Minus
3R 19937502..19938050 1088..1636 100 <- Minus
3R 19938124..19938456 755..1087 100 <- Minus
3R 20006235..20006659 330..754 100 <- Minus
3R 20008161..20008489 1..329 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:11 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19929720..19930532 1822..2634 100 <- Minus
3R 19937254..19937438 1637..1821 100 <- Minus
3R 19937502..19938050 1088..1636 100 <- Minus
3R 19938124..19938456 755..1087 100 <- Minus
3R 20006235..20006659 330..754 100 <- Minus
3R 20008161..20008489 1..329 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:11 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19929720..19930532 1822..2634 100 <- Minus
3R 19937254..19937438 1637..1821 100 <- Minus
3R 19937502..19938050 1088..1636 100 <- Minus
3R 19938124..19938456 755..1087 100 <- Minus
3R 20006235..20006659 330..754 100 <- Minus
3R 20008161..20008489 1..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:10 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15762976..15763160 1637..1821 100 <- Minus
arm_3R 15755442..15756254 1822..2634 100 <- Minus
arm_3R 15763224..15763772 1088..1636 100 <- Minus
arm_3R 15763846..15764178 755..1087 100 <- Minus
arm_3R 15831957..15832381 330..754 100 <- Minus
arm_3R 15833883..15834211 1..329 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:52 Download gff for LD39166.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19748992..19749320 1..329 100   Minus
3R 19670551..19671363 1822..2634 100 <- Minus
3R 19678085..19678269 1637..1821 100 <- Minus
3R 19678333..19678881 1088..1636 100 <- Minus
3R 19678955..19679287 755..1087 100 <- Minus
3R 19747066..19747490 330..754 100 <- Minus

LD39166.hyp Sequence

Translation from 568 to 1956

> LD39166.hyp
MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA
GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS
NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV
FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR
YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM
SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE
SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG
LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL
NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW
DSNVEDGLSTDH*

LD39166.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-PB 462 CG4451-PB 1..462 1..462 2458 100 Plus
Hs6st-PA 462 CG4451-PA 1..462 1..462 2458 100 Plus

LD39166.pep Sequence

Translation from 568 to 1956

> LD39166.pep
MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA
GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS
NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV
FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR
YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM
SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE
SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG
LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL
NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW
DSNVEDGLSTDH*

LD39166.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17343-PA 381 GF17343-PA 1..381 78..462 2008 95.3 Plus
Dana\GF17344-PA 68 GF17344-PA 1..63 1..63 339 98.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15697-PA 454 GG15697-PA 1..454 1..462 2442 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23267-PA 397 GH23267-PA 15..397 60..462 1917 87.3 Plus
Dgri\GH19610-PA 371 GH19610-PA 1..371 72..462 1867 87.5 Plus
Dgri\GH23259-PA 71 GH23259-PA 1..67 1..67 346 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-PB 462 CG4451-PB 1..462 1..462 2458 100 Plus
Hs6st-PA 462 CG4451-PA 1..462 1..462 2458 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10319-PA 456 GI10319-PA 1..456 1..462 2239 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12524-PA 465 GL12524-PA 3..465 2..462 2285 94 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28003-PB 358 GA28003-PB 1..358 63..418 1729 93.3 Plus
Dpse\GA30239-PB 100 GA30239-PB 3..63 2..62 327 96.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26877-PA 353 GM26877-PA 1..353 63..418 1675 93 Plus
Dsec\GM17703-PA 69 GM17703-PA 1..67 1..67 358 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\mira-PA 462 GD20088-PA 1..462 1..462 2511 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10173-PA 380 GJ10173-PA 1..380 78..462 1868 89.7 Plus
Dvir\GJ10174-PA 77 GJ10174-PA 1..63 1..63 348 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22800-PA 467 GK22800-PA 1..467 1..462 2256 90.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25098-PA 350 GE25098-PA 1..350 113..462 1907 99.4 Plus