BDGP Sequence Production Resources |
Search the DGRC for LD39166
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 391 |
Well: | 66 |
Vector: | pOT2 |
Associated Gene/Transcript | Hs6st-RA |
Protein status: | LD39166.pep: gold |
Preliminary Size: | 2927 |
Sequenced Size: | 2656 |
Gene | Date | Evidence |
---|---|---|
CG12249 | 2001-01-01 | Release 2 assignment |
CG4451 | 2001-01-01 | Release 2 assignment |
CG11683 | 2001-01-01 | Release 2 assignment |
CG17188 | 2001-01-01 | Release 2 assignment |
CG4451 | 2001-07-04 | Blastp of sequenced clone |
CG4451 | 2003-01-01 | Sim4 clustering to Release 3 |
Hs6st | 2008-04-29 | Release 5.5 accounting |
Hs6st | 2008-08-15 | Release 5.9 accounting |
Hs6st | 2008-12-18 | 5.12 accounting |
2656 bp (2656 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051902
> LD39166.complete AAGAATGCGGACGTTGACGCTGGTACCGCGTCGTTTTGCCAAAATAATTC GTAAAAAATATACGCAAAACGCTTAGAAAGTGTCAATTAACTAAACATTA GCTATTGAGCAGTGCAAGTGCAGGAAAAACGATCGCAGAAATAGCCGAAA ACACATGAAAGTGCGAATTGCGGGCTTTTTTGTGGCTGGCACAGAATGTG TGGCACAAAGCGGAAAGCGCGCTAATTGAGCGTGCGAGCGCCTGAAACGC AGAGAAATGTAAATAAATAAACGTGTGACGCCGCGACAATTGTGAAAAGT GCACAAACACGACGTTTGGCAAGTGAAAAGCACTGAAAGCCGAGAGACAA GGAAAACCCATTTCCGCGCCAAGTGCAATGGGCGAAGGTGTTCCCATTTT TCGAGTTCTTATCGGGCAGCGACTGAAGTATGATTGAGTTGGCCTCGCCT CCGATTCGCGTCTGGTTCTCGTTGCGCTAGGCCGATACGGATACCCGCTT GGACTCCACTCGGGTGGACCCTTGTTGGACCTTTAGTGCGATTTTCGAGG GAGGCCAGGGAATGGAACATGCCCGGGGATATGCATAAGAACGTATCTGT TCAAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAA TCAAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGC CTCTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGA TCAGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATA TCCTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGC AATGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCAC GGCCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAG GGTTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGAT GGCCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTC GTTTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGT GCCAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAG AACTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGC CGACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACG AAGGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAA CCCATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCAC CTGGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCG AGCTGCCCGCTTGCTACAAGGGCAAGGACTGGCTGGACGTGGATCTTGAC CAGTTCGCCGGCTGCGAGTCCAATCTGGCGGCTAACCGCCAGACCCGCAT GCTGGCCGATCTCGCCCTCGTCGGCTGCTACAACAAGTCTTCGATGCCCG CTCATGAGCGGGATCGCGTGATGCTGGCCAGCGCAAAGCGCAATCTGGCC GCCATGGCCTACTTTGGACTGACTGAATATCAAAAGATGTCCCAGTACAT TTTCGAGGAGACTTTCAACCTGCGTTTCGCCATTCCCTTCGAGCAGCACA ACACCACAATCTCGGCGACTGCTGTCCAGAATCTTCGACCCGACCAGAAG CGTCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGC CAAGACTTTGCTCTTTCAGCGTTTCGAACATCTGAAGGCAAAGGACACAA ACTTTGAGCAGCGCTACGCCAATCTGGGCAACATCTACTTCAAGCAGGGC GTCACGGAATTCAACTGGGACAGCAACGTGGAGGATGGGCTCAGCACGGA TCATTGAACTCGAAACCAAATATTACCGATTAGGAACTAGATGTAGGACA AACCAACTCATAAATATGTAGCTGGGAAGGGCGGAATATGGGGGGGTGGT CACTAAGGTTACCGATACGCAGAAGCATCAGCATAAAAATCAACCGAAGG ACTTTAAACTAGCGATTAAGCATAATGTTAATTAAGCAGACAAAAAACAT CTAGCGGACTTGGCTTGTTTCAATCGAACGTAACACAACTAAAGGACAAA CGAGCAAAATCTCAGAGCGTATATTATCTCTAAACCTAAACCTAAGCAAA ACTATAAAATCTATGACTATAACTATACTCCTTGCTTAAGTCGCGCACCG AAAATTTTAGAAAATGTAAATACTTTGCATAAAATGTTTATTTCTTAAAC GCAAGTTCCCTTTTCAAACATTGTGAGGTGCGAGCCCACTCGAATTCACT TTTCACCTTCACAACGCACCCACACTACTACACCGCCATAAATTAGATTA ATTAATTAATTTGTAATACGTAGCTTTTCGTTTATTGTTACGCCAAGTCT CTGCAAAGCCAAATCCACACTTAGTCTAAGAGCATAGTGCTTGGAAAATG TTTTCGATCCAATAACGCATTTATTTTATTTTACTACTAGACATCACTGT AAATACTGCAGAATAAAGTTAAACAAAACAATTGAAAAAAAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 15753638..15754451 | 2634..1821 | 4025 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 15761395..15761945 | 1636..1086 | 2620 | 98.4 | Minus |
chr3R | 27901430 | chr3R | 15830169..15830596 | 757..330 | 2110 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 15762017..15762352 | 1087..752 | 1680 | 100 | Minus |
chr3R | 27901430 | chr3R | 15832097..15832426 | 330..1 | 1635 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 15761147..15761333 | 1821..1635 | 920 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 19929718..19930533 | 2636..1821 | 4080 | 100 | Minus |
3R | 32079331 | 3R | 19937502..19938052 | 1636..1086 | 2755 | 100 | Minus |
3R | 32079331 | 3R | 20006232..20006659 | 757..330 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 19938124..19938459 | 1087..752 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 20008160..20008489 | 330..1 | 1650 | 100 | Minus |
3R | 32079331 | 3R | 19937254..19937440 | 1821..1635 | 935 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 19670549..19671364 | 2636..1821 | 4080 | 100 | Minus |
3R | 31820162 | 3R | 19678333..19678883 | 1636..1086 | 2755 | 100 | Minus |
3R | 31820162 | 3R | 19747063..19747490 | 757..330 | 2140 | 100 | Minus |
3R | 31820162 | 3R | 19678955..19679290 | 1087..752 | 1680 | 100 | Minus |
3R | 31820162 | 3R | 19748991..19749320 | 330..1 | 1650 | 100 | Minus |
3R | 31820162 | 3R | 19678085..19678271 | 1821..1635 | 935 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 15753638..15754450 | 1822..2634 | 99 | <- | Minus |
chr3R | 15761147..15761331 | 1637..1821 | 99 | <- | Minus |
chr3R | 15761395..15761943 | 1088..1636 | 98 | <- | Minus |
chr3R | 15762017..15762349 | 755..1087 | 100 | <- | Minus |
chr3R | 15830172..15830596 | 330..754 | 99 | <- | Minus |
chr3R | 15832098..15832426 | 1..329 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 1..1389 | 569..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 1..1389 | 569..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 1..1389 | 569..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 1..1389 | 569..1957 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 34..2667 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 34..2667 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 24..2657 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 34..2667 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs6st-RA | 24..2657 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19929720..19930532 | 1822..2634 | 100 | <- | Minus |
3R | 19937254..19937438 | 1637..1821 | 100 | <- | Minus |
3R | 19937502..19938050 | 1088..1636 | 100 | <- | Minus |
3R | 19938124..19938456 | 755..1087 | 100 | <- | Minus |
3R | 20006235..20006659 | 330..754 | 100 | <- | Minus |
3R | 20008161..20008489 | 1..329 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19929720..19930532 | 1822..2634 | 100 | <- | Minus |
3R | 19937254..19937438 | 1637..1821 | 100 | <- | Minus |
3R | 19937502..19938050 | 1088..1636 | 100 | <- | Minus |
3R | 19938124..19938456 | 755..1087 | 100 | <- | Minus |
3R | 20006235..20006659 | 330..754 | 100 | <- | Minus |
3R | 20008161..20008489 | 1..329 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19929720..19930532 | 1822..2634 | 100 | <- | Minus |
3R | 19937254..19937438 | 1637..1821 | 100 | <- | Minus |
3R | 19937502..19938050 | 1088..1636 | 100 | <- | Minus |
3R | 19938124..19938456 | 755..1087 | 100 | <- | Minus |
3R | 20006235..20006659 | 330..754 | 100 | <- | Minus |
3R | 20008161..20008489 | 1..329 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 15762976..15763160 | 1637..1821 | 100 | <- | Minus |
arm_3R | 15755442..15756254 | 1822..2634 | 100 | <- | Minus |
arm_3R | 15763224..15763772 | 1088..1636 | 100 | <- | Minus |
arm_3R | 15763846..15764178 | 755..1087 | 100 | <- | Minus |
arm_3R | 15831957..15832381 | 330..754 | 100 | <- | Minus |
arm_3R | 15833883..15834211 | 1..329 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19748992..19749320 | 1..329 | 100 | Minus | |
3R | 19670551..19671363 | 1822..2634 | 100 | <- | Minus |
3R | 19678085..19678269 | 1637..1821 | 100 | <- | Minus |
3R | 19678333..19678881 | 1088..1636 | 100 | <- | Minus |
3R | 19678955..19679287 | 755..1087 | 100 | <- | Minus |
3R | 19747066..19747490 | 330..754 | 100 | <- | Minus |
Translation from 568 to 1956
> LD39166.hyp MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW DSNVEDGLSTDH*
Translation from 568 to 1956
> LD39166.pep MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW DSNVEDGLSTDH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17343-PA | 381 | GF17343-PA | 1..381 | 78..462 | 2008 | 95.3 | Plus |
Dana\GF17344-PA | 68 | GF17344-PA | 1..63 | 1..63 | 339 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15697-PA | 454 | GG15697-PA | 1..454 | 1..462 | 2442 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23267-PA | 397 | GH23267-PA | 15..397 | 60..462 | 1917 | 87.3 | Plus |
Dgri\GH19610-PA | 371 | GH19610-PA | 1..371 | 72..462 | 1867 | 87.5 | Plus |
Dgri\GH23259-PA | 71 | GH23259-PA | 1..67 | 1..67 | 346 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hs6st-PB | 462 | CG4451-PB | 1..462 | 1..462 | 2458 | 100 | Plus |
Hs6st-PA | 462 | CG4451-PA | 1..462 | 1..462 | 2458 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10319-PA | 456 | GI10319-PA | 1..456 | 1..462 | 2239 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12524-PA | 465 | GL12524-PA | 3..465 | 2..462 | 2285 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28003-PB | 358 | GA28003-PB | 1..358 | 63..418 | 1729 | 93.3 | Plus |
Dpse\GA30239-PB | 100 | GA30239-PB | 3..63 | 2..62 | 327 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26877-PA | 353 | GM26877-PA | 1..353 | 63..418 | 1675 | 93 | Plus |
Dsec\GM17703-PA | 69 | GM17703-PA | 1..67 | 1..67 | 358 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\mira-PA | 462 | GD20088-PA | 1..462 | 1..462 | 2511 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10173-PA | 380 | GJ10173-PA | 1..380 | 78..462 | 1868 | 89.7 | Plus |
Dvir\GJ10174-PA | 77 | GJ10174-PA | 1..63 | 1..63 | 348 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22800-PA | 467 | GK22800-PA | 1..467 | 1..462 | 2256 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25098-PA | 350 | GE25098-PA | 1..350 | 113..462 | 1907 | 99.4 | Plus |