Clone LD39211 Report

Search the DGRC for LD39211

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:392
Well:11
Vector:pOT2
Associated Gene/TranscriptCG14764-RA
Protein status:LD39211.pep: gold
Preliminary Size:3005
Sequenced Size:2783

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14764 2001-01-01 Release 2 assignment
CG2923 2001-01-01 Release 2 assignment
CG14764 2001-11-29 Blastp of sequenced clone
CG14764 2003-01-01 Sim4 clustering to Release 3
CG14764 2008-04-29 Release 5.5 accounting
CG14764 2008-08-15 Release 5.9 accounting
CG14764 2008-12-18 5.12 accounting

Clone Sequence Records

LD39211.complete Sequence

2783 bp (2783 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069622

> LD39211.complete
CCCGCTTTCCCACCTCTATCACCAACGAATTTGCATAAAAAACTTTCAGC
GAGCTAAAAGCGCGCACGGCGTTACCGATTCTGGTGCAGTTCGCTAGCTT
TTCCGCATTATTTCGTCCTGTGAAATTTAGTTGCCCCTGGCATATGTACC
GTGTCCGCTTAAGAGAGCTGGTGAATACGGAAAACGAAGTTCCCTATTAT
CGACGACGAGCGCTCGAGAAGTCTTTTTTGAACTGCGAATTCAAGTGTTT
TGTTTGTTGTCCGCGTCGCTCTTCATGATTATCATGTCTTATTTACCCTT
ACGAAGGGAAAACCGAAAGTAGAACCCGCAAGCCGCAGAAACTGTAAATT
ATGTAAAAGTGTATGGCCAACAACAAGTCGTTATGTGCATCAGTATGAGT
GCGTGCGTTGAGTGAGCTTATCAGAAAAGTTTAATGGAGGCTGCGCCGGT
AATTTCTCCATGTCACCACCCCAGTCTGCAGCAACAACAACTGCACGCGG
CGTACAACAAAAGCAACTGTAAATAACCGCTGCCCTTTGATGAGCGCCCC
ATTAAAAACTGAGAACCAATAATGTTAACAACGGGAAACTGCAGCCATAA
TGATGATGACGGGATAAACAAATAAATGCTCAATAACCTAATTGCGTGGC
AAGTCATAGAAGCGAACGATGATGGTCTAGTGCCAAACGCTGTGTAATAG
ACCAAATTGCCACTCGGCTAAAAGGGAAAGCCAAAAGCCTTCAGACTGGA
GGCCTCACTCACGCTGAAGCGCATCTTTGCCCGCAAAATTGGCTACAAGG
CGAAGACGAAGTCAATTTTAGCGGCCATGCGCACGAAACACCTGATCCTG
ATACTGATCGGAGTGATAATCGCCACGATCGTCTTCATCGCATTTGGTCC
AGCCGGAGAGCCGAACGATTCATTCAAGAACATCGTTGTCCAGACGCACC
AGCAGTTTAAAGAGTTCCAGGAAAACCTCCGCGTTGGCTTGGAACGCAAA
AAGCTCGAAATAGACCCAAAGTATTTGCTTCTTCTGGGCTTCACCTCGTC
AAATGAAGCTACAGGCCAACAGCAGCAGCTGGATCAGCAAAATGTGGTGG
ACATCGGTTCACCAGGTCAGCAACTGCCAAAGACAGATTTTTCAGCGCCG
GCTACAAAAGCGGAACTGGAGCTCAGCGAACTGCGAGGTCTGCGGCGTCC
ACAGGATGCTGTTACCTTCGGTAGTCAGGCAGGAGATCAAAAGGGGCAGC
GGAAGCGGATCACGACGCCGTACAACGGTACAAAGAGCAACTTCACAATC
GTCAGCTATGTGCTGGAGGGGCAGGCCGCATCGGCCATCCTGCTGGCCCA
GAATATTGCCGCCAAGCTTCCCAGCGAGTACCTGCTAATCTACGATTTGG
GCGTTTCCGAGGAGCAACTACGGGATTTGGGCGCCTACTGTAATAACAGC
CGATGCTCGGTGATCACCTATGATCTGTCGGAGTTTCCCTCCTTCGTCGC
CGATCAGCGGACGCACGCCTACCGGCCCATTGTAATTAAGGACGGTCTTA
TGCGTGCCCGATCGGTTCTCTTCTTGGAAAACAGCATGCGCGTGCGCGGA
GGTTCCGCCCAGCTGCGAAGTCTGCAGAGCATCGTTATGAATCCAGGAGT
GGGAAAATCTGCAGTCAAGTCCGCTGGAGTGCTCGGATGGAACACAGCGA
CGGCGGTATCCTCTCTGACGCATCCAAAAATGTTCGACTACTTTGAGTCG
AAAGCTGAGGAGTTTAACTTTCTTCGGATGGTCGACCTGGATGCTGTCTT
CTTCTCGGACAGCTCCTTGGTGGCCGAGAAGATCATGCTTCCCTGGCTGA
AGTGCTGCCTCACCCTCGAGTGCATCGATCCGATCGGTGCCCAATCGAAT
GGCTGCAAGTTCAACAAGAAGCCGATGTTCCGATACTCTGGCTGCCACGG
CTACGATGCGTCCGCCTTCAACATCGTGCTGGGCCTAACTTTCCAAATGG
ACACCTCTGAATACTCGCTGCCCGGCGACAGTCCGCGTAACATATTCTAC
AAGGAAAGCCTGGAGCAGGCGACCCGTATACTGGAGAGCAGGCGGCGCAA
CAGCAGCGAAACCTCCGACCATCCTTTCACGGACGACTGAGCTGGGAAAC
CTAAAAATCGAACTGGACGAGAGCGTGGCCAAAGCATTTGATATAACTTT
TTCTACCGACAACCACACAAGCGGATACACTCAGGCGGTGACGGAGCCAA
CTGAGATTACTAGGAATATCGAAGGAAATGAGAGTTATTGATGTGAATTA
GATAAAGGGTAACCGATTCCCACTTGAACAGATATAGACAGATGACTTGG
CGTCCAAGAAAAGATCAGAAATGAACAGACACAGCACAGTAATTAAGCGT
AGCGTAATTATGTGCAGCTTATCAATACTTATTACAATTTAGTGCAGCCC
TAATTACTTATTTAATGAAATATACATACATGAAAATCTGTGTTAATGTC
CCCGTGTTTTTGCTGCGAGAGTCGATATGTGTAAAAGCCCCTGTTTAGTT
AACTATCCCAAATGTAAATACATAAAAACATCAAATGGCATACATTTTGT
GATTGTATTTTATAGTTACTCACGCGTAGACAAACATATACAGTATATAA
ATATAAATATAAATGTAATTTAACTATCCTAGAACAAGACGAGCCAAAAA
GTAAGTTAATAAAATTCTGAATTACGAATACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD39211.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14764-RA 2805 CG14764-RA 71..2804 1..2734 13670 100 Plus
CG14764.a 2380 CG14764.a 616..2379 971..2734 8820 100 Plus
CG14764.a 2380 CG14764.a 56..622 1..567 2820 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3834995..3835916 1889..968 4595 99.9 Minus
chr2R 21145070 chr2R 3829436..3830282 2732..1886 4220 99.9 Minus
chr2R 21145070 chr2R 3842704..3843264 561..1 2805 100 Minus
chr2R 21145070 chr2R 3841293..3841703 971..561 2055 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7947602..7948523 1889..968 4610 100 Minus
2R 25286936 2R 7942041..7942889 2734..1886 4245 100 Minus
2R 25286936 2R 7955312..7955872 561..1 2805 100 Minus
2R 25286936 2R 7953901..7954311 971..561 2055 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7948801..7949722 1889..968 4610 100 Minus
2R 25260384 2R 7943240..7944088 2734..1886 4245 100 Minus
2R 25260384 2R 7956511..7957071 561..1 2805 100 Minus
2R 25260384 2R 7955100..7955510 971..561 2055 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:06:20 has no hits.

LD39211.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:07:00 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3829436..3830281 1887..2732 99 <- Minus
chr2R 3834998..3835913 971..1886 99 <- Minus
chr2R 3841294..3841703 561..970 100 <- Minus
chr2R 3842705..3843264 1..560 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:53:38 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..1314 827..2140 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:11 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..1314 827..2140 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:53:23 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..1314 827..2140 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:53:28 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..1314 827..2140 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:34 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..1314 827..2140 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:38 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..2732 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:10 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..2732 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:23 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 11..2742 1..2732 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:53:28 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 1..2732 1..2732 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:34 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
CG14764-RA 11..2742 1..2732 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:07:00 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7942043..7942888 1887..2732 100 <- Minus
2R 7947605..7948520 971..1886 100 <- Minus
2R 7953902..7954311 561..970 100 <- Minus
2R 7955313..7955872 1..560 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:07:00 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7942043..7942888 1887..2732 100 <- Minus
2R 7947605..7948520 971..1886 100 <- Minus
2R 7953902..7954311 561..970 100 <- Minus
2R 7955313..7955872 1..560 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:07:00 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7942043..7942888 1887..2732 100 <- Minus
2R 7947605..7948520 971..1886 100 <- Minus
2R 7953902..7954311 561..970 100 <- Minus
2R 7955313..7955872 1..560 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:23 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3829548..3830393 1887..2732 100 <- Minus
arm_2R 3835110..3836025 971..1886 100 <- Minus
arm_2R 3841407..3841816 561..970 100 <- Minus
arm_2R 3842818..3843377 1..560 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:29:37 Download gff for LD39211.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7943242..7944087 1887..2732 100 <- Minus
2R 7948804..7949719 971..1886 100 <- Minus
2R 7955101..7955510 561..970 100 <- Minus
2R 7956512..7957071 1..560 100   Minus

LD39211.pep Sequence

Translation from 826 to 2139

> LD39211.pep
MRTKHLILILIGVIIATIVFIAFGPAGEPNDSFKNIVVQTHQQFKEFQEN
LRVGLERKKLEIDPKYLLLLGFTSSNEATGQQQQLDQQNVVDIGSPGQQL
PKTDFSAPATKAELELSELRGLRRPQDAVTFGSQAGDQKGQRKRITTPYN
GTKSNFTIVSYVLEGQAASAILLAQNIAAKLPSEYLLIYDLGVSEEQLRD
LGAYCNNSRCSVITYDLSEFPSFVADQRTHAYRPIVIKDGLMRARSVLFL
ENSMRVRGGSAQLRSLQSIVMNPGVGKSAVKSAGVLGWNTATAVSSLTHP
KMFDYFESKAEEFNFLRMVDLDAVFFSDSSLVAEKIMLPWLKCCLTLECI
DPIGAQSNGCKFNKKPMFRYSGCHGYDASAFNIVLGLTFQMDTSEYSLPG
DSPRNIFYKESLEQATRILESRRRNSSETSDHPFTDD*

LD39211.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11228-PA 421 GF11228-PA 1..421 1..437 1681 76 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10694-PA 436 GG10694-PA 1..436 1..437 2134 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20579-PA 435 GH20579-PA 1..435 1..437 1526 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14764-PC 437 CG14764-PC 1..437 1..437 2236 100 Plus
CG14764-PA 437 CG14764-PA 1..437 1..437 2236 100 Plus
CG14764-PB 100 CG14764-PB 1..52 1..52 246 94.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19726-PA 422 GI19726-PA 1..422 1..437 1525 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10382-PA 425 GL10382-PA 1..425 1..437 1706 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13231-PA 425 GA13231-PA 1..425 1..437 1700 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20742-PA 437 GM20742-PA 1..437 1..437 2309 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10208-PA 384 GD10208-PA 1..354 1..354 1834 97.2 Plus
Dsim\GD10207-PA 69 GD10207-PA 1..58 1..58 196 86.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14964-PA 423 GJ14964-PA 1..423 1..437 1570 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21346-PA 420 GK21346-PA 1..420 1..437 1613 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23476-PA 430 GE23476-PA 1..430 1..437 2116 93.8 Plus

LD39211.hyp Sequence

Translation from 826 to 2139

> LD39211.hyp
MRTKHLILILIGVIIATIVFIAFGPAGEPNDSFKNIVVQTHQQFKEFQEN
LRVGLERKKLEIDPKYLLLLGFTSSNEATGQQQQLDQQNVVDIGSPGQQL
PKTDFSAPATKAELELSELRGLRRPQDAVTFGSQAGDQKGQRKRITTPYN
GTKSNFTIVSYVLEGQAASAILLAQNIAAKLPSEYLLIYDLGVSEEQLRD
LGAYCNNSRCSVITYDLSEFPSFVADQRTHAYRPIVIKDGLMRARSVLFL
ENSMRVRGGSAQLRSLQSIVMNPGVGKSAVKSAGVLGWNTATAVSSLTHP
KMFDYFESKAEEFNFLRMVDLDAVFFSDSSLVAEKIMLPWLKCCLTLECI
DPIGAQSNGCKFNKKPMFRYSGCHGYDASAFNIVLGLTFQMDTSEYSLPG
DSPRNIFYKESLEQATRILESRRRNSSETSDHPFTDD*

LD39211.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14764-PC 437 CG14764-PC 1..437 1..437 2236 100 Plus
CG14764-PA 437 CG14764-PA 1..437 1..437 2236 100 Plus
CG14764-PB 100 CG14764-PB 1..52 1..52 246 94.2 Plus