Clone LD39232 Report

Search the DGRC for LD39232

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:392
Well:32
Vector:pOT2
Associated Gene/TranscriptCG43345-RB
Protein status:LD39232.pep2: gold LD39232.pep: gold
Preliminary Size:2195
Sequenced Size:2224

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9243 2001-01-01 Release 2 assignment
CG9243 2001-07-04 Blastp of sequenced clone
CG9243 2003-01-01 Sim4 clustering to Release 3
CG9243 2008-04-29 Release 5.5 accounting
CG9243 2008-08-15 Release 5.9 accounting
CG9243 2008-12-18 5.12 accounting

Clone Sequence Records

LD39232.complete Sequence

2224 bp (2224 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051903.1

> LD39232.complete
CTTTCCCACAACTGCGCGAATAATAAATAGGCTCGGCTGTGAAAAATGTT
TGACAATGGCCAGTCAGCATTAGTCCTGATCCCCTTGCCATGTCCGAGCG
TCGCGTAGTGCATGAGATACCCGGAGAGTACCAGCCAGTGCCCAGAGCAC
CGGAAGAGCCAACCCCTTTGACCACATCGTGTTGCCGGCGTCCCAATTGC
GGCCTAGGGCTCCAGGATGAGCGAAATATCTGTTCCTGCAAGCACGGCTA
CATCATACCAGTGCTTATACTCTTCGTTCTGGTGATGATTGTGCTTCTGT
TGCCTTGGGAGACCTACCATCGAAATGAAAACGGAAACAGCCCCGTTCCG
GTGGAAAAGCCGTTACCATGTCAACTCGAACTGGTGGAGAGCTTGCCCTT
GGGGTTGAACTACAGCCAATGGCAAAGCCACCCCCAACTGAGTAGCACCT
TTGATGCCTGGCAGCTACTACTAGGCAGGGCCAAGGCATCGTTGGACATC
GTTTCTCCGCACTGGACACTGCGCGGCTTGGACGTCAACGATAGCAGCAC
CGGGCCTGGAGATCAACTCTTTCAGCAGCTACTGTCGAATGGAGATGCCG
GCAGACCCAAGCTGCGCGTGCGGATTGTGGTTAATCGCAGCCACGATAGC
CTGTGGCATGCTGATGCCCGTATCTTGGCTAACTACGGAGCAGCCGACGT
CGTGGGCATTAATTTTCTGCACTCAAAACTGTGGTTAGTGGACGGGGAGC
ACTTCTACTTGGGCACAGCTAGCATGGACTGGCGATCACTGACGCAACGC
AAGGAACTAGGTGTGCTGGCCAGAAATTGTCCCCATCTTGCTCTAGATCT
GGGAAAGATCTTCAAGGCGTATTGGTACCTGGGCAGCAATGAAGTGCCAA
AGAGCTGGCCGTGGATATACCACACGCACATCAATCAAAGAAGACCGCTT
TTGCTAAACATCAACAAAAAACATACAATGAGAGCTTATTTATCCACATC
ACCACCAGAGTTGATCGCTACTGGAAGGACCCGAGAGCTAGATGCCATTT
TAGAGGCTATCGACAAGGCCACAGACGTTATATACCTCTCCTTAATGGAG
TACTCTCCTCGGCTAAGACGGAGTAACAAATTGGAGTACTGGCCGGTCAT
AGACAATGCCCTGCGTAGAGCTGCCTTGGAACGCGGTGTGGCCATTAAGG
TGCTTATTTCATGGTGGAAGTATTCGGATCCCAGCGAGGATCACTTCTTG
AGGTCCCTTCAAGCGCTCGACAAAATTACGGAAGGAGTAGATATACAAAT
GCGACGTTTTGTTGTACCCACCACAAATGAACTGGAGAGGATTTCCGGCG
GTAGAGTTAACTGCAACTCGTACTTAGTCACCGATAGGGTTGCCTTTATA
GGCACCTCCAGTTTTTCGGGAGAGCATTTTACTTACTCAGCTGGCATTGG
ATTAGTACTCCAGGACATGGAATACAACAATAATAGTCTCCGTACAGATT
TAATGGCAATTTTTCTGCGGGACTGGTTTAGTCCCTATGCATTGCCACTG
AAACCAATTTTACGAATTTGAATTACGCTTTTAAACCTGCCGGCATTTTG
CAACACCGCCACCAGCTGTTCATGTCATAACAAACGCAAGACCTAACCTC
AAATTCTAAAATAAATTTAAGTTCCTCGCTCTTAAGTTAAAATAAGCATG
GCTAACAAGCCGACGCGCGATGTGATCGGCATCATCTTCAAGAACTTTTG
GAAGTCCCTACGACCGCGGCAGTTTCGTGGGGATTACATTGGGGAGGACT
ATTTCGGGAATAAGTACTACGAAATTCCTGCAAATCCTTCGATTGGAAAG
AGGAAGCCTTCCCGGTGGTTCGAGCCAGCGGATAAGGAAGCCTTCGACCA
GGAGCTGACTGCCGAATGGGAGGCGTGGCTACGAGGGCGCCGGGAGGAGC
CGCCCACCCGCGAAGAGCTGGTGAAAAATCTTCAGATTATGGACATGAAG
AAACGCAACGCCGCCGAATTGGAAGCAACATACGCCAAGGGCAAGGACGA
CAAGGCACTGCCCAAGCAGGTGGACGGACCAACTATTGGAACCTTTCCCA
AATACAAGGAGTATGAGTTTATTCCTGGCAAGGAGCCACCGGAGAAGTAA
CTCTATATTGGTTTTCCTTTTAATTTAATGTGTAAATATAGTTAAATTGA
TCTTAAAAAAAAAAAAAAAAAAAA

LD39232.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9243.a 2378 CG9243.a 175..2378 1..2204 11020 100 Plus
CG9243-RA 2253 CG9243-RA 53..2253 1..2201 11005 100 Plus
CG9243-RB 1906 CG9243-RB 53..1402 1..1350 6750 100 Plus
CG9243-RB 1906 CG9243-RB 1402..1906 1686..2190 2525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21165508..21166808 1301..1 6505 100 Minus
chr2L 23010047 chr2L 21164551..21165454 2204..1301 4520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21168303 1301..1 6505 100 Minus
2L 23513712 2L 21166043..21166949 2207..1301 4535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21167003..21168303 1301..1 6505 100 Minus
2L 23513712 2L 21166043..21166949 2207..1301 4535 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:57:53 has no hits.

LD39232.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:58:56 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21164551..21165453 1302..2204 100 <- Minus
chr2L 21165508..21166808 1..1301 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:27 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 1..1482 90..1571 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:17 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 1..1482 90..1571 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:58 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG43345-RB 1..1482 90..1571 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:47 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 1..1482 90..1571 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:47 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG43345-RB 1..1482 90..1571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:57 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 42..2242 1..2201 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:17 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 42..2242 1..2201 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:58 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG43346-RA 47..2250 1..2204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:47 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG9243-RA 42..2242 1..2201 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:47 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
CG43345-RC 279..2482 1..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:56 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166046..21166948 1302..2204 100 <- Minus
2L 21167003..21168303 1..1301 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:56 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166046..21166948 1302..2204 100 <- Minus
2L 21167003..21168303 1..1301 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:58:56 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166046..21166948 1302..2204 100 <- Minus
2L 21167003..21168303 1..1301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:58 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21166046..21166948 1302..2204 100 <- Minus
arm_2L 21167003..21168303 1..1301 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:55 Download gff for LD39232.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21166046..21166948 1302..2204 100 <- Minus
2L 21167003..21168303 1..1301 100   Minus

LD39232.hyp Sequence

Translation from 89 to 1570

> LD39232.hyp
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRI*

LD39232.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-PC 493 CG43345-PC 1..493 1..493 2622 100 Plus
CG43345-PB 493 CG9243-PA 1..493 1..493 2622 100 Plus
CG9248-PC 494 CG9248-PC 33..493 42..487 1018 45.3 Plus
CG9248-PA 494 CG9248-PA 33..493 42..487 1018 45.3 Plus
CG9248-PB 494 CG9248-PB 33..493 42..487 1018 45.3 Plus

LD39232.pep Sequence

Translation from 89 to 1570

> LD39232.pep
MSERRVVHEIPGEYQPVPRAPEEPTPLTTSCCRRPNCGLGLQDERNICSC
KHGYIIPVLILFVLVMIVLLLPWETYHRNENGNSPVPVEKPLPCQLELVE
SLPLGLNYSQWQSHPQLSSTFDAWQLLLGRAKASLDIVSPHWTLRGLDVN
DSSTGPGDQLFQQLLSNGDAGRPKLRVRIVVNRSHDSLWHADARILANYG
AADVVGINFLHSKLWLVDGEHFYLGTASMDWRSLTQRKELGVLARNCPHL
ALDLGKIFKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINKKHTMRAY
LSTSPPELIATGRTRELDAILEAIDKATDVIYLSLMEYSPRLRRSNKLEY
WPVIDNALRRAALERGVAIKVLISWWKYSDPSEDHFLRSLQALDKITEGV
DIQMRRFVVPTTNELERISGGRVNCNSYLVTDRVAFIGTSSFSGEHFTYS
AGIGLVLQDMEYNNNSLRTDLMAIFLRDWFSPYALPLKPILRI*

LD39232.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15153-PA 572 GF15153-PA 1..439 1..442 1709 72.9 Plus
Dana\GF14741-PA 493 GF14741-PA 45..493 55..488 1034 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21517-PA 493 GG21517-PA 1..493 1..493 2462 92.9 Plus
Dere\GG21283-PA 493 GG21283-PA 3..493 13..488 1045 44.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10479-PA 508 GH10479-PA 17..503 12..488 1414 56.5 Plus
Dgri\GH13672-PA 479 GH13672-PA 70..478 94..487 1090 52.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG43345-PC 493 CG43345-PC 1..493 1..493 2622 100 Plus
CG43345-PB 493 CG9243-PA 1..493 1..493 2622 100 Plus
CG9248-PC 494 CG9248-PC 33..493 42..487 1018 45.3 Plus
CG9248-PA 494 CG9248-PA 33..493 42..487 1018 45.3 Plus
CG9248-PB 494 CG9248-PB 33..493 42..487 1018 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17997-PA 421 GI17997-PA 5..421 86..493 1390 60.4 Plus
Dmoj\GI17100-PA 474 GI17100-PA 69..470 94..484 1094 52.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25859-PA 442 GL25859-PA 8..442 65..493 1625 68.8 Plus
Dper\GL25893-PA 491 GL25893-PA 82..491 94..488 1058 50.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21638-PA 498 GA21638-PA 1..498 1..493 1772 68 Plus
Dpse\GA21643-PA 491 GA21643-PA 82..491 94..488 1047 50.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23269-PA 493 GM23269-PA 1..493 1..493 2505 95.1 Plus
Dsec\GM23395-PA 494 GM23395-PA 3..493 13..487 979 43.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21647-PA 493 GD21647-PA 1..493 1..493 2509 95.3 Plus
Dsim\GD24305-PA 494 GD24305-PA 33..493 42..487 989 45.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19603-PA 510 GJ19603-PA 1..510 1..493 1474 57.8 Plus
Dvir\GJ16138-PA 473 GJ16138-PA 68..469 94..484 1076 52.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21048-PA 472 GK21048-PA 1..468 1..471 1321 55.7 Plus
Dwil\GK21113-PA 477 GK21113-PA 19..477 44..488 959 43.8 Plus
Dwil\GK15877-PA 200 GK15877-PA 34..189 56..209 232 36.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12996-PA 493 GE12996-PA 1..493 1..493 2392 90.9 Plus
Dyak\GE12900-PA 493 GE12900-PA 32..492 42..487 1045 46.3 Plus

LD39232.pep2 Sequence

Translation from 1697 to 2149

> LD39232.pep2
MANKPTRDVIGIIFKNFWKSLRPRQFRGDYIGEDYFGNKYYEIPANPSIG
KRKPSRWFEPADKEAFDQELTAEWEAWLRGRREEPPTREELVKNLQIMDM
KKRNAAELEATYAKGKDDKALPKQVDGPTIGTFPKYKEYEFIPGKEPPEK
*

LD39232.pep2 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15153-PA 572 GF15153-PA 427..572 5..150 738 93.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21518-PA 150 GG21518-PA 1..150 1..150 778 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10480-PA 151 GH10480-PA 1..146 1..145 651 84.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG43346-PC 150 CG43346-PC 1..150 1..150 816 100 Plus
CG43346-PB 150 CG43346-PB 1..150 1..150 816 100 Plus
CG43346-PA 150 CG9243-PB 1..150 1..150 816 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17998-PA 150 GI17998-PA 3..148 2..147 629 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25860-PA 151 GL25860-PA 1..150 1..150 708 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25471-PA 151 GA25471-PA 1..149 1..149 704 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23270-PA 150 GM23270-PA 1..150 1..150 768 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21648-PA 119 GD21648-PA 1..119 1..150 557 78 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19608-PA 152 GJ19608-PA 1..147 1..147 592 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21049-PA 150 GK21049-PA 1..150 1..150 727 91.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12997-PA 150 GE12997-PA 1..150 1..150 764 98 Plus