Clone LD39243 Report

Search the DGRC for LD39243

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:392
Well:43
Vector:pOT2
Associated Gene/TranscriptCG4502-RA
Protein status:LD39243.pep: gold
Preliminary Size:2169
Sequenced Size:2073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4502 2001-01-01 Release 2 assignment
CG4502 2001-09-19 Blastp of sequenced clone
CG4502 2003-01-01 Sim4 clustering to Release 3
CG4502 2008-04-29 Release 5.5 accounting
CG4502 2008-08-15 Release 5.9 accounting
CG4502 2008-12-18 5.12 accounting

Clone Sequence Records

LD39243.complete Sequence

2073 bp (2073 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060422

> LD39243.complete
CGCGGGCGAAAAAAGTGCAGTGCAACGAAAAGTTGGTGATACAGTGTCCA
GACCAGGAAATAATTCAAAAGTCGCGTGGAAACGCCGAACCTTATTGCTT
TTTGCTAGCGCTCAATAAAAGATATAATTGTTGGGAAGAACTGCATTCGA
GATTGCTTCTCCCGTTGCTATTATTTGTTTCTCTGTGCGAGTGGCGAAGG
AAGCGAAAGAAACGAGAATCGGGAATAAAGCGGATTGCTGATTAGCACGA
ATCGTGGAAAGAAAACAGAAGAACAGCGAATTGCATTTTACACTTGGCAA
ATACAATTTCCACGCCCACATTGCACCAGGAACCATTTAAAGAAGAAGAC
TGAACAAACACGCCCACGAAGTACTTGTAAACTACTGAATCAAAAGCCAC
CGCTCAAGTAACTCAGAAGCACACAATCAAAATCCAGCACACAGCAAATC
CACTCGTTGCAGACCAAGCCAATCCCAGCCAAGATGTCGTCGCGTTCCAA
GGAAAGAGTAGTCACTGCATTCCGCAAAATCTTCCACAAGTCCAGCAACA
ACAATAATAATAACAACAACAACCATAATAATAATATAAATAATAATAAC
AACAATGACAAGGTCGATGGCGCCACTGGCAGCAGCCCGAATATAAACAA
CAATAATAATAATAATAATAATAACAACAATCACGATGGAGCAGCAGCAC
CCTCTTCGGCAGGAGGCGTCGCCGTGGCCGGTGGAGCAGTAGGATCGTCG
GGATCATCCGGTGCCGCAAAAAATGCCGTAGTTCGAATGGCAGCCGAGCA
AGCTGTGTGGGATTCACCAGGCAAGCGGCGACGACAAGATCACAAGGTGG
CGCCGACAACGGAACGCCAACTGGTGGCGGCTCCGGATCATACGATTCGA
ACCCGTCGCCTGATGAAAGAATACCGCGAAATGGAGCGACTGCAGGCCAA
GAACGATGCTGTCTTCACGGTGGAACTCGTCAACGATAGTCTATTCGAGT
GGCACGTACGCCTGCACGTGATTGATCCCGACTCGCCGCTGGCCAGAGAT
ATGGCCGAGATGGGTGTGCCGGCCATACTGTTGCACCTGAGTTTCCCCGA
CAACTTCCCCTTTGCCCCGCCCTTTATGCGCGTGGTGGAGCCGCACATCG
AGAAGGGTTACGTGATGGAGGGTGGCGCCATCTGCATGGAGCTCTTAACC
CCACGCGGATGGGCCAGTGCCTATACGGTGGAGGCGGTCATCATGCAGTT
CGCAGCCAGCGTGGTTAAGGGCCAAGGCAGGATCGCGCGCAAGCCAAAGA
GTACAAAGGAGTTCACTCGGCGCCAGGCTGAGGAGTCGTTCCGTTCGCTG
GTGAAGACGCACGAGAAGTACGGATGGGTAACGCCCGCCCTGTCCGATGG
ATAAGCGCCGCATTCCGGACCGCAAGGAAACTCAGCTCAGATGCTCTGCG
TTTGCCAACACAACCAATGCAATTTAATAATCAGCCACCCAGCCAAGTTC
GCTCATAGTAATACATCAAGACATTTATCCATCTTTATACTCTCTGTTTC
ATCTACTTGTCAAGTAACGAACGATTTCAATTGCAAACCATCCAAAGCAA
CAAGACGAACTCCCAGAAACAAACAAACATGAAAAAACAAAACATCTAAA
TAAAACAAACTAAAAACGCGCATCAAGCAACAAATTTGCTTAAAATGTAA
CTCTAGCTCGTAGTCATCAGTAAATAGGAAGTTTCGCCGAATACAAAATG
GATATTTAAGTATTATTAGTTAAACAGGAACAAAAAAAAAAAACAAGTAC
GATGAACACCACTTTTCCACTATAATTTCCTTCGTCTAGCGCATATTAAG
TTATATAAGATTTACAGAATCAATTAGTCTGATATCTTGGTTCGACTGTG
TTATAATTTGTTGTGATTTTTGTTGAACTTAAACAAACCGTGAATAAACC
AAATTACAACATCAGCTTGTAAACATAAGTGTGTTCCTCGAACTTCGCAC
TTTCATTCTAAGCTATGCATAATAAATAAATCTAACATGTGTCTATTATC
GCAAAAAAAAAAAAAAAAAAAAA

LD39243.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-RA 2133 CG4502-RA 79..2131 1..2053 10265 100 Plus
CG4502.c 2100 CG4502.c 42..2098 1..2053 10200 99.8 Plus
CG4502.b 2077 CG4502.b 30..2077 1..2052 10175 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7193914..7194647 2052..1319 3640 99.7 Minus
chr2L 23010047 chr2L 7195319..7195864 846..301 2730 100 Minus
chr2L 23010047 chr2L 7194708..7195059 1320..969 1730 99.4 Minus
chr2L 23010047 chr2L 7202955..7203254 300..1 1500 100 Minus
chr2L 23010047 chr2L 7195117..7195242 971..846 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:33:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7194907..7195641 2053..1319 3675 100 Minus
2L 23513712 2L 7196312..7196857 846..301 2730 100 Minus
2L 23513712 2L 7195702..7196053 1320..969 1760 100 Minus
2L 23513712 2L 7203939..7204238 300..1 1500 100 Minus
2L 23513712 2L 7196110..7196235 971..846 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7194907..7195641 2053..1319 3675 100 Minus
2L 23513712 2L 7196312..7196857 846..301 2730 100 Minus
2L 23513712 2L 7195702..7196053 1320..969 1760 100 Minus
2L 23513712 2L 7203939..7204238 300..1 1500 100 Minus
2L 23513712 2L 7196110..7196235 971..846 630 100 Minus
Blast to na_te.dros performed 2019-03-15 22:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1 1666 Tc1 TC1 1666bp 1327..1541 1925..1722 115 57.2 Minus

LD39243.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:20 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7194709..7195058 970..1319 99 <- Minus
chr2L 7195119..7195242 846..969 100 <- Minus
chr2L 7193914..7194646 1320..2052 99 <- Minus
chr2L 7195320..7195864 301..845 100 <- Minus
chr2L 7202955..7203254 1..300 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:28 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 1..921 484..1404 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:11 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 1..921 484..1404 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:15 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 1..921 484..1404 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:21 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 1..921 484..1404 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:58 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RB 1..921 484..1404 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:39 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 22..2073 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:11 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 22..2073 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:15 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 27..2078 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:21 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 22..2073 1..2052 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:58 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4502-RA 27..2078 1..2052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:20 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7203939..7204238 1..300 100   Minus
2L 7194908..7195640 1320..2052 100 <- Minus
2L 7195703..7196052 970..1319 100 <- Minus
2L 7196112..7196235 846..969 100 <- Minus
2L 7196313..7196857 301..845 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:20 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7203939..7204238 1..300 100   Minus
2L 7194908..7195640 1320..2052 100 <- Minus
2L 7195703..7196052 970..1319 100 <- Minus
2L 7196112..7196235 846..969 100 <- Minus
2L 7196313..7196857 301..845 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:20 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7203939..7204238 1..300 100   Minus
2L 7194908..7195640 1320..2052 100 <- Minus
2L 7195703..7196052 970..1319 100 <- Minus
2L 7196112..7196235 846..969 100 <- Minus
2L 7196313..7196857 301..845 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:15 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7196112..7196235 846..969 100 <- Minus
arm_2L 7195703..7196052 970..1319 100 <- Minus
arm_2L 7194908..7195640 1320..2052 100 <- Minus
arm_2L 7196313..7196857 301..845 100 <- Minus
arm_2L 7203939..7204238 1..300 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:28 Download gff for LD39243.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7194908..7195640 1320..2052 100 <- Minus
2L 7195703..7196052 970..1319 100 <- Minus
2L 7196112..7196235 846..969 100 <- Minus
2L 7196313..7196857 301..845 100 <- Minus
2L 7203939..7204238 1..300 100   Minus

LD39243.hyp Sequence

Translation from 483 to 1403

> LD39243.hyp
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDG*

LD39243.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PA 306 CG4502-PA 1..306 1..306 1601 100 Plus
CG4502-PB 306 CG4502-PB 1..306 1..306 1601 100 Plus
CG2924-PD 397 CG2924-PD 224..397 140..306 452 51.7 Plus
CG2924-PB 397 CG2924-PB 224..397 140..306 452 51.7 Plus
CG2924-PE 397 CG2924-PE 224..397 140..306 452 51.7 Plus

LD39243.pep Sequence

Translation from 483 to 1403

> LD39243.pep
MSSRSKERVVTAFRKIFHKSSNNNNNNNNNHNNNINNNNNNDKVDGATGS
SPNINNNNNNNNNNNNHDGAAAPSSAGGVAVAGGAVGSSGSSGAAKNAVV
RMAAEQAVWDSPGKRRRQDHKVAPTTERQLVAAPDHTIRTRRLMKEYREM
ERLQAKNDAVFTVELVNDSLFEWHVRLHVIDPDSPLARDMAEMGVPAILL
HLSFPDNFPFAPPFMRVVEPHIEKGYVMEGGAICMELLTPRGWASAYTVE
AVIMQFAASVVKGQGRIARKPKSTKEFTRRQAEESFRSLVKTHEKYGWVT
PALSDG*

LD39243.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24417-PA 306 GF24417-PA 1..306 1..306 1185 82.2 Plus
Dana\GF21964-PA 400 GF21964-PA 227..400 140..306 479 51.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23546-PA 298 GG23546-PA 1..298 1..306 1251 92.5 Plus
Dere\GG23547-PA 205 GG23547-PA 1..205 102..306 1071 95.1 Plus
Dere\GG12629-PA 397 GG12629-PA 224..397 140..306 479 51.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13159-PA 308 GH13159-PA 1..308 1..306 1067 78.2 Plus
Dgri\GH24254-PA 394 GH24254-PA 221..394 140..306 488 52.9 Plus
Dgri\GH10576-PA 174 GH10576-PA 3..174 142..306 483 52.9 Plus
Dgri\GH13122-PA 381 GH13122-PA 205..381 137..306 396 43.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4502-PA 306 CG4502-PA 1..306 1..306 1601 100 Plus
CG4502-PB 306 CG4502-PB 1..306 1..306 1601 100 Plus
CG2924-PD 397 CG2924-PD 224..397 140..306 452 51.7 Plus
CG2924-PB 397 CG2924-PB 224..397 140..306 452 51.7 Plus
CG2924-PE 397 CG2924-PE 224..397 140..306 452 51.7 Plus
CG2924-PA 397 CG2924-PA 224..397 140..306 452 51.7 Plus
Hr4-PE 1842 CG43934-PE 257..304 20..67 166 62.5 Plus
Hr4-PK 1843 CG43934-PK 257..304 20..67 166 62.5 Plus
Hr4-PJ 1843 CG43934-PJ 257..304 20..67 166 62.5 Plus
Hr4-PG 1986 CG43934-PG 400..447 20..67 166 62.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17799-PA 323 GI17799-PA 1..323 1..306 1069 72.8 Plus
Dmoj\GI21448-PA 401 GI21448-PA 228..401 140..306 489 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16225-PA 290 GL16225-PA 1..290 1..306 1080 75.5 Plus
Dper\GL13385-PA 390 GL13385-PA 217..390 140..306 484 52.3 Plus
Dper\GL20899-PA 389 GL20899-PA 219..389 142..306 418 49.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18226-PA 290 GA18226-PA 1..290 1..306 1080 75.5 Plus
Dpse\GA15522-PA 390 GA15522-PA 217..390 140..306 484 52.3 Plus
Dpse\GA28233-PA 389 GA28233-PA 219..389 142..306 424 49.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13615-PA 302 GM13615-PA 1..302 1..306 1249 94.8 Plus
Dsec\GM18895-PA 397 GM18895-PA 224..397 140..306 479 51.7 Plus
Dsec\GM23086-PA 326 GM23086-PA 196..326 183..306 320 47.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22508-PA 301 GD22508-PA 1..301 1..306 1548 96.1 Plus
Dsim\GD16376-PA 397 GD16376-PA 224..397 140..306 479 51.7 Plus
Dsim\GD17538-PA 397 GD17538-PA 224..397 140..306 444 48.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17623-PA 325 GJ17623-PA 1..325 1..306 1108 72.9 Plus
Dvir\GJ16469-PA 396 GJ16469-PA 223..396 140..306 489 52.3 Plus
Dvir\GJ23257-PA 381 GJ23257-PA 208..381 140..306 466 50 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24734-PA 303 GK24734-PA 1..303 1..306 1134 75.7 Plus
Dwil\GK10301-PA 397 GK10301-PA 224..397 140..306 485 52.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18372-PA 303 GE18372-PA 1..303 1..306 1237 89.2 Plus
Dyak\GE16958-PA 397 GE16958-PA 224..397 140..306 479 51.7 Plus