Clone LD39332 Report

Search the DGRC for LD39332

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:393
Well:32
Vector:pOT2
Associated Gene/TranscriptCG1518-RA
Protein status:LD39332.pep: gold
Sequenced Size:2494

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1518 2008-04-29 Picked prior to 5.5
CG1518 2008-08-15 Release 5.9 accounting
CG1518 2008-12-18 5.12 accounting

Clone Sequence Records

LD39332.complete Sequence

2494 bp assembled on 2008-05-22

GenBank Submission: BT032845

> LD39332.complete
AGCCGGCAGGCGGAAGAGCAAGGAAAATGACGCTGGACGTGGGCGGCGTC
GCCAGGGGACTGCTCACCTGGGACAAACAGGAGCACCTGGTCAAGCTGGC
CATTCTCATCCTGGCAGCGGTTTTATCATTTGCCACACGCTTGTTCTCTG
TGCTGCGATTCGAAAGCGTAATCCATGAGTTCGATCCGTACTTCAACTAC
CGCACCACGCGGTTTCTGGCGGAGCAGGGCTTTTACAAGTTCCACAACTG
GTTCGATGACCGCGCCTGGTATCCCCTGGGCCGCATCATCGGCGGCACCA
TCTATCCCGGGCTGATGCTCACCTCGGCGGCCCTGTACCGCCTGATGTGG
CTGCTCAATGTGACCATCGACATACGGAACGTGTGCGTCTTCCTGGCGCC
CTTCTTCTCCTCGCTGACCACGCTGGTGACCTACGCCCTCACAAAGGAGA
TACACAGCACTGGAGCTGGACTGGTGGCCGCCGCTTTGATATCCATCGTT
CCCGGGTATATCTCTCGATCCGTGGCGGGATCGTACGACAATGAAGGCAT
CGCCATTTTCTGCATGCTCTTCACCTACTATTTGTGGATCAAGGCGGTAA
AGACGGGCACGATCTTTTGGTCGGCTATGTCGGCATTGGCCTACTTCTAT
ATGGTCTCCTCGTGGGGTGGCTATGTCTTCCTGATTAACCTAATCCCGCT
GCACGTGCTGGCGCTGATGATCACCGGACGTTTCTCGCACAGGATCTACA
TAGCATACAGCACGCTATACTGCGTCGGCACCATTCTGTCGATGCAGATC
TCGTTTGTGGGATTCCAACCCATCCAGAGCTCCGAACACATGCTGGCACT
GGGAACCTTTGGCCTGTGCCAGATTCACGCTTTCGTCGACTATCTGCGCT
CGCGCATTCCCAAGGATCACTTCGATCTGCTCTTCAAGACGTTGGTTTCC
AGTGTTTTGACTGTGGTGTTCGTCGTGGGTACCCTGCTCACGCTTACCGG
GAAAGTCTCCCCCTGGACCGGCAGATTTTACTCGCTACTAGATCCATCCT
ATGCCAAGAATCACATTCCAATCATCGCCTCCGTATCGGAGCATCAGCCT
ACATCCTGGTCGTCTTTCTATTTTGATCTGCAGATCCTGGTCTTCCTCTT
TCCCGCTGGCCTTTATTTCTGCTTTTCCAAGCTGACGGACTCGAACATCT
TTATTATTTTGTATGGCGTCACCAGTATTTATTTCGCCGGAGTGATGGTG
CGTCTAATGCTGGTCCTGGCGCCCGTGATGTGTGTGCTATCCGGAATTGC
CATTTCGCATCTGCTGGCCAAGTATATCAAGAGCGTTGATGCCGGAAGCT
CATCGAAGCAGGGAGTAGAAAGCAAGCGGCAGCACAAGAAGCTGGAACAG
CAGACGGGAGGCGTGAAGAGCGAGGTGGCCATTGGATTCGTGGGTGTCAT
CACTCTGATGCTTATAGTGTACACGCTGCACTGCACCTGGGTCACCTCGG
AGGCCTACTCCTCGCCCAGTATTGTGTTGAGTGCCAGGTCGCACGATGGC
GGCCGCATCATTTTCGATGACTTCCGCGAGGCCTACTACTGGCTGCAGAT
GAACACTCCGGAGGACGCTCGCATAATGTCCTGGTGGGACTACGGCTACC
AGATAACGGCCATGGCCAATCGGACGATATTGGTGGATAACAATACTTGG
AACAACACACATATATCGCGCGTTGGCCAGGCGATGGCCTCTTCGGAGGA
GAAAGCCTACGAGATAATGAGGGAACTGGATGTGGACTACGTTCTCGTGA
TTTTCGGAGGGCTCACTGGCTACTCATCGGACGATATCAACAAGTTCCTG
TGGATGGTGCGCATTGGCGGCAGCACGGATCGTGGTGCGCACATCCGCGA
AAAGGACTACTATGCGGCCAACGGAGAGTTCCGAGTGGACAAGGAGGGCT
CACCCACACTGCTCAATTGTTTGATGTACAAGATGTGCTACTATCGCTTT
GGGCAAATGTACACGGAAGGTGGCAAAGCCCAGGGCTACGATCGAGTTCG
TGCCGCCGAGATCGGCAACAAGGACTTTGAACTGGATGTCATGGAGGAGG
CGTACACCACGGAGCACTGGCTGGTGCGCATCTACAAGGTTAAGGATCTG
CCGAATCGTGGAGTCTGAGAAATAAGTGTCGCAGTCATTCCGCTCTATTC
TGTGTTCTGTACATTAGCTAACTCTGCCCGTCTCCCTCTATCTCGAATAT
TTGGCAATCTCTCTCGCTCTATGAGCACCAATTGCTGCATTCTCCTGCTT
TGCCCATCATGCATTTAGTTCTACACTGGCACAAAACCACAAAAACCAAG
TATTTTTTTTGTTTTTATATTTTTACAAATGTCTCAAGTGTACCAGATGC
GTCTGGCTTCTTAAGCAAGAAAGGAGCATGTAAGCGAATCGAACGAAATA
TATATATGTGGAGAAAAACTATCATAAAAAAAAAAAAAAAAAAA

LD39332.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1518-RA 2971 CG1518-RA 381..2857 1..2477 12385 100 Plus
CG1518.a 2567 CG1518.a 1221..2567 1129..2475 6720 99.9 Plus
CG1518.a 2567 CG1518.a 381..1225 1..845 4225 100 Plus
OstStt3-RA 2833 OstStt3-RA 1788..2036 1553..1801 330 75.5 Plus
OstStt3-RA 2833 OstStt3-RA 1215..1307 1049..1141 210 81.7 Plus
OstStt3-RA 2833 OstStt3-RA 400..483 234..317 195 82.1 Plus
OstStt3-RA 2833 OstStt3-RA 802..872 636..706 160 81.6 Plus
OstStt3-RA 2833 OstStt3-RA 2068..2101 1833..1866 140 94.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20915121..20915984 2475..1612 4320 100 Minus
chrX 22417052 chrX 20916282..20916767 1614..1129 2430 100 Minus
chrX 22417052 chrX 20917566..20917956 846..456 1955 100 Minus
chrX 22417052 chrX 20918055..20918383 455..127 1645 100 Minus
chrX 22417052 chrX 20917073..20917365 1133..841 1450 99.7 Minus
chrX 22417052 chrX 20918768..20918893 126..1 630 100 Minus
chr3R 27901430 chr3R 20890711..20891024 1866..1553 400 75.2 Minus
chr3R 27901430 chr3R 20892445..20892591 317..171 225 76.9 Minus
chr3R 27901430 chr3R 20891621..20891713 1141..1049 210 81.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21049962..21050827 2477..1612 4330 100 Minus
X 23542271 X 21051125..21051610 1614..1129 2430 100 Minus
X 23542271 X 21052409..21052799 846..456 1955 100 Minus
X 23542271 X 21052898..21053226 455..127 1645 100 Minus
X 23542271 X 21051916..21052208 1133..841 1450 99.7 Minus
X 23542271 X 21053611..21053736 126..1 630 100 Minus
3R 32079331 3R 25067539..25067852 1866..1553 415 75.5 Minus
3R 32079331 3R 25069273..25069419 317..171 225 76.9 Minus
3R 32079331 3R 25068449..25068541 1141..1049 210 81.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21035054..21035919 2477..1612 4330 100 Minus
X 23527363 X 21036217..21036702 1614..1129 2430 100 Minus
X 23527363 X 21037501..21037891 846..456 1955 100 Minus
X 23527363 X 21037990..21038318 455..127 1645 100 Minus
X 23527363 X 21037008..21037300 1133..841 1450 99.6 Minus
X 23527363 X 21038703..21038828 126..1 630 100 Minus
3R 31820162 3R 24808435..24808683 1801..1553 330 75.5 Minus
3R 31820162 3R 24809280..24809372 1141..1049 210 81.7 Minus
3R 31820162 3R 24810104..24810187 317..234 195 82.1 Minus
3R 31820162 3R 24809715..24809785 706..636 160 81.6 Minus
3R 31820162 3R 24808370..24808403 1866..1833 140 94.1 Minus
Blast to na_te.dros performed on 2019-03-16 20:29:43 has no hits.

LD39332.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:30:55 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20915121..20915982 1614..2475 100 <- Minus
chrX 20916283..20916762 1134..1613 100 <- Minus
chrX 20917073..20917360 846..1133 100 <- Minus
chrX 20917567..20917956 456..845 100 <- Minus
chrX 20918055..20918383 127..455 100 <- Minus
chrX 20918768..20918893 1..126 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:35 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 1..2142 27..2168 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:37:41 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 1..2142 27..2168 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:45 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 1..2142 27..2168 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:43:22 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 1..2142 27..2168 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:23 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 1..2142 27..2168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:06:49 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 381..2855 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:37:41 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 381..2855 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:45 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 202..2676 1..2475 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:43:22 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 381..2855 1..2475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:23 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
CG1518-RA 202..2676 1..2475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:55 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
X 21053611..21053736 1..126 100   Minus
X 21049964..21050825 1614..2475 100 <- Minus
X 21051126..21051605 1134..1613 100 <- Minus
X 21051916..21052203 846..1133 100 <- Minus
X 21052410..21052799 456..845 100 <- Minus
X 21052898..21053226 127..455 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:55 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
X 21053611..21053736 1..126 100   Minus
X 21049964..21050825 1614..2475 100 <- Minus
X 21051126..21051605 1134..1613 100 <- Minus
X 21051916..21052203 846..1133 100 <- Minus
X 21052410..21052799 456..845 100 <- Minus
X 21052898..21053226 127..455 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:30:55 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
X 21053611..21053736 1..126 100   Minus
X 21049964..21050825 1614..2475 100 <- Minus
X 21051126..21051605 1134..1613 100 <- Minus
X 21051916..21052203 846..1133 100 <- Minus
X 21052410..21052799 456..845 100 <- Minus
X 21052898..21053226 127..455 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:45 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20920991..20921852 1614..2475 100 <- Minus
arm_X 20922153..20922632 1134..1613 100 <- Minus
arm_X 20922943..20923230 846..1133 100 <- Minus
arm_X 20923437..20923826 456..845 100 <- Minus
arm_X 20923925..20924253 127..455 100 <- Minus
arm_X 20924638..20924763 1..126 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:35 Download gff for LD39332.complete
Subject Subject Range Query Range Percent Splice Strand
X 21037990..21038318 127..455 100 <- Minus
X 21037502..21037891 456..845 100 <- Minus
X 21038703..21038828 1..126 100   Minus
X 21035056..21035917 1614..2475 100 <- Minus
X 21036218..21036697 1134..1613 100 <- Minus
X 21037008..21037295 846..1133 100 <- Minus

LD39332.pep Sequence

Translation from 2 to 2167

> LD39332.pep
PAGGRARKMTLDVGGVARGLLTWDKQEHLVKLAILILAAVLSFATRLFSV
LRFESVIHEFDPYFNYRTTRFLAEQGFYKFHNWFDDRAWYPLGRIIGGTI
YPGLMLTSAALYRLMWLLNVTIDIRNVCVFLAPFFSSLTTLVTYALTKEI
HSTGAGLVAAALISIVPGYISRSVAGSYDNEGIAIFCMLFTYYLWIKAVK
TGTIFWSAMSALAYFYMVSSWGGYVFLINLIPLHVLALMITGRFSHRIYI
AYSTLYCVGTILSMQISFVGFQPIQSSEHMLALGTFGLCQIHAFVDYLRS
RIPKDHFDLLFKTLVSSVLTVVFVVGTLLTLTGKVSPWTGRFYSLLDPSY
AKNHIPIIASVSEHQPTSWSSFYFDLQILVFLFPAGLYFCFSKLTDSNIF
IILYGVTSIYFAGVMVRLMLVLAPVMCVLSGIAISHLLAKYIKSVDAGSS
SKQGVESKRQHKKLEQQTGGVKSEVAIGFVGVITLMLIVYTLHCTWVTSE
AYSSPSIVLSARSHDGGRIIFDDFREAYYWLQMNTPEDARIMSWWDYGYQ
ITAMANRTILVDNNTWNNTHISRVGQAMASSEEKAYEIMRELDVDYVLVI
FGGLTGYSSDDINKFLWMVRIGGSTDRGAHIREKDYYAANGEFRVDKEGS
PTLLNCLMYKMCYYRFGQMYTEGGKAQGYDRVRAAEIGNKDFELDVMEEA
YTTEHWLVRIYKVKDLPNRGV*

LD39332.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21857-PA 713 GF21857-PA 1..713 9..721 3713 96.9 Plus
Dana\GF17105-PA 774 GF17105-PA 18..725 29..714 2219 58.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17558-PA 713 GG17558-PA 1..713 9..721 3796 99.7 Plus
Dere\GG12291-PA 774 GG12291-PA 18..725 29..714 2214 58 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12900-PA 719 GH12900-PA 1..719 9..721 3645 94.6 Plus
Dgri\GH19585-PA 774 GH19585-PA 18..725 29..714 2193 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Stt3A-PC 713 CG1518-PC 1..713 9..721 3724 100 Plus
Stt3A-PA 713 CG1518-PA 1..713 9..721 3724 100 Plus
Stt3B-PA 774 CG7748-PA 18..725 29..714 2202 58.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14454-PA 719 GI14454-PA 1..719 9..721 3635 93.6 Plus
Dmoj\GI23816-PA 774 GI23816-PA 18..725 29..714 2203 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21896-PA 774 GL21896-PA 18..725 29..714 2212 58.3 Plus
Dper\GL16584-PA 672 GL16584-PA 214..672 262..721 2200 92.8 Plus
Dper\GL16584-PA 672 GL16584-PA 37..217 17..197 914 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22298-PA 720 GA22298-PA 17..720 17..721 3610 96.2 Plus
Dpse\GA22539-PA 774 GA22539-PA 18..725 29..714 2210 58.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22642-PA 713 GM22642-PA 1..713 9..721 3776 99.2 Plus
Dsec\GM17756-PA 774 GM17756-PA 18..725 29..714 2214 58.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24643-PA 511 GD24643-PA 1..506 9..537 2562 94.2 Plus
Dsim\GD18237-PA 742 GD18237-PA 18..705 29..714 2093 56.1 Plus
Dsim\GD13502-PA 143 GD13502-PA 15..143 593..721 695 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18789-PA 719 GJ18789-PA 1..719 9..721 3650 94.7 Plus
Dvir\GJ23594-PA 774 GJ23594-PA 18..725 29..714 2184 57.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10089-PA 709 GK10089-PA 4..709 15..721 3652 95.6 Plus
Dwil\GK13408-PA 774 GK13408-PA 18..725 29..714 2202 57.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15319-PA 713 GE15319-PA 1..713 9..721 3797 99.6 Plus
Dyak\GE10744-PA 774 GE10744-PA 18..725 29..714 2213 58.1 Plus

LD39332.hyp Sequence

Translation from 2 to 2167

> LD39332.hyp
PAGGRARKMTLDVGGVARGLLTWDKQEHLVKLAILILAAVLSFATRLFSV
LRFESVIHEFDPYFNYRTTRFLAEQGFYKFHNWFDDRAWYPLGRIIGGTI
YPGLMLTSAALYRLMWLLNVTIDIRNVCVFLAPFFSSLTTLVTYALTKEI
HSTGAGLVAAALISIVPGYISRSVAGSYDNEGIAIFCMLFTYYLWIKAVK
TGTIFWSAMSALAYFYMVSSWGGYVFLINLIPLHVLALMITGRFSHRIYI
AYSTLYCVGTILSMQISFVGFQPIQSSEHMLALGTFGLCQIHAFVDYLRS
RIPKDHFDLLFKTLVSSVLTVVFVVGTLLTLTGKVSPWTGRFYSLLDPSY
AKNHIPIIASVSEHQPTSWSSFYFDLQILVFLFPAGLYFCFSKLTDSNIF
IILYGVTSIYFAGVMVRLMLVLAPVMCVLSGIAISHLLAKYIKSVDAGSS
SKQGVESKRQHKKLEQQTGGVKSEVAIGFVGVITLMLIVYTLHCTWVTSE
AYSSPSIVLSARSHDGGRIIFDDFREAYYWLQMNTPEDARIMSWWDYGYQ
ITAMANRTILVDNNTWNNTHISRVGQAMASSEEKAYEIMRELDVDYVLVI
FGGLTGYSSDDINKFLWMVRIGGSTDRGAHIREKDYYAANGEFRVDKEGS
PTLLNCLMYKMCYYRFGQMYTEGGKAQGYDRVRAAEIGNKDFELDVMEEA
YTTEHWLVRIYKVKDLPNRGV*

LD39332.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1518-PC 713 CG1518-PC 1..713 9..721 3724 100 Plus
CG1518-PA 713 CG1518-PA 1..713 9..721 3724 100 Plus
OstStt3-PA 774 CG7748-PA 18..725 29..714 2202 58.1 Plus