Clone LD39409 Report

Search the DGRC for LD39409

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:394
Well:9
Vector:pOT2
Associated Gene/TranscriptaurB-RA
Protein status:LD39409.pep: gold
Preliminary Size:1268
Sequenced Size:1169

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6620 2001-01-01 Release 2 assignment
CG6620 2003-01-01 Sim4 clustering to Release 3
CG6620 2003-01-14 Blastp of sequenced clone
ial 2008-04-29 Release 5.5 accounting
ial 2008-08-15 Release 5.9 accounting
ial 2008-12-18 5.12 accounting

Clone Sequence Records

LD39409.complete Sequence

1169 bp (1169 high quality bases) assembled on 2003-01-14

GenBank Submission: AY118562

> LD39409.complete
GGACGCTTATAGAAAATACAACTTAAAATAATTAATTTACTTAAAAATCA
TAATATTATAAACAAGTCAGCGCCATGACGCTTTCCCGCGCGAAGCACGC
CAACCGCAACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACC
AGGAGCCGATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATAC
GGACAGCCATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTT
GGGACGCGGCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGC
ACTATCTGGTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGC
TGCGTGCAGCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAA
GCACCCGCACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCA
TCTATCTGGCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTG
CGTGGCGCACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACAC
CTACCAAGTGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCC
ATCGGGATCTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTT
AAGCTGGCCGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAG
GACTCTGTGCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGA
ACTCCTACGACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTAC
GAGTTCGTCGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCAC
CTACAGCAAGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCA
AGGGCTGCAAGGAATTGATTGGCGGGCTGCTTCGCAAGGAAAGCAAGGGC
CGCATCACCTTGGTGGATGTGATGACCCATTATTGGGTGAAGGCGGGAAT
GGCCGAAAGGGAGCTGCAGCTGCAGAAACGGGAGCGCGGCAAGGAGAACA
CGGCCAGAAATTGACTGGTTTCGAGTTTGCATTGTGTAACGACTTATTTC
AGATTTTACTTTTATGTTTAATAAACGGTTTATAAGATTTAAAAAAAATA
AAAAAAAAAAAAAAAAAAA

LD39409.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
ial-RA 1270 ial-RA 60..1201 1..1142 5710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10855843..10856560 926..209 3590 100 Minus
chr2L 23010047 chr2L 10855567..10855783 1142..926 1070 99.5 Minus
chr2L 23010047 chr2L 10856611..10856823 213..1 1050 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 926..209 3590 100 Minus
2L 23513712 2L 10856795..10857011 1142..926 1085 100 Minus
2L 23513712 2L 10857839..10858051 213..1 1050 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 926..209 3590 100 Minus
2L 23513712 2L 10856795..10857011 1142..926 1085 100 Minus
2L 23513712 2L 10857839..10858051 213..1 1050 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 05:37:07 has no hits.

LD39409.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:37:44 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10855560..10855782 927..1149 97 <- Minus
chr2L 10855843..10856560 209..926 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:38 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 75..1064 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:58 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 75..1064 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:12:03 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 75..1064 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:50 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 75..1064 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:50 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 1..990 75..1064 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:53 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 32..1179 1..1149 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:57 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 32..1179 1..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:03 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 44..1183 1..1140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:51 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 32..1179 1..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:50 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 44..1183 1..1140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:44 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856788..10857010 927..1149 98 <- Minus
2L 10857071..10857788 209..926 100 <- Minus
2L 10857844..10858051 1..208 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:44 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856788..10857010 927..1149 98 <- Minus
2L 10857071..10857788 209..926 100 <- Minus
2L 10857844..10858051 1..208 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:37:44 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856788..10857010 927..1149 98 <- Minus
2L 10857071..10857788 209..926 100 <- Minus
2L 10857844..10858051 1..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:03 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856788..10857010 927..1149 98 <- Minus
arm_2L 10857071..10857788 209..926 100 <- Minus
arm_2L 10857844..10858051 1..208 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:08 Download gff for LD39409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856788..10857010 927..1149 98 <- Minus
2L 10857071..10857788 209..926 100 <- Minus
2L 10857844..10858051 1..208 100   Minus

LD39409.pep Sequence

Translation from 74 to 1063

> LD39409.pep
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARN*

LD39409.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14057-PA 329 GF14057-PA 1..329 1..329 1594 89.1 Plus
Dana\GF17839-PA 404 GF17839-PA 142..401 48..307 724 52.3 Plus
Dana\GF10707-PA 770 GF10707-PA 1..267 36..305 465 36.9 Plus
Dana\GF12120-PA 692 GF12120-PA 41..303 53..320 423 36.3 Plus
Dana\GF21892-PA 495 GF21892-PA 187..419 52..287 422 37.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10347-PA 329 GG10347-PA 1..329 1..329 1770 98.8 Plus
Dere\GG18531-PA 421 GG18531-PA 159..418 48..307 731 51.9 Plus
Dere\GG13228-PA 766 GG13228-PA 1..267 36..305 474 37.8 Plus
Dere\GG24016-PA 485 GG24016-PA 177..409 52..287 422 37.7 Plus
Dere\GG21916-PA 699 GG21916-PA 41..304 53..321 422 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13588-PA 331 GH13588-PA 1..331 1..329 1488 81.6 Plus
Dgri\GH23526-PA 398 GH23526-PA 136..395 48..307 722 51.2 Plus
Dgri\GH16744-PA 762 GH16744-PA 1..272 36..308 459 36.2 Plus
Dgri\GH11053-PA 353 GH11053-PA 45..277 52..287 422 37.7 Plus
Dgri\GH20038-PA 719 GH20038-PA 34..293 53..313 410 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-PA 329 CG6620-PA 1..329 1..329 1774 100 Plus
aurA-PA 411 CG3068-PA 149..408 48..307 718 51.9 Plus
SAK-PA 769 CG7186-PA 1..264 36..302 470 38.2 Plus
Pka-C1-PD 353 CG4379-PD 45..277 52..287 412 37.7 Plus
Pka-C1-PC 353 CG4379-PC 45..277 52..287 412 37.7 Plus
Pka-C1-PB 353 CG4379-PB 45..277 52..287 412 37.7 Plus
par-1-PS 827 CG8201-PS 240..514 45..315 411 33.8 Plus
par-1-PW 832 CG8201-PW 240..514 45..315 411 33.8 Plus
par-1-PL 833 CG8201-PL 240..514 45..315 411 33.8 Plus
par-1-PA 938 CG8201-PA 240..514 45..315 411 33.8 Plus
par-1-PV 951 CG8201-PV 240..514 45..315 411 33.8 Plus
par-1-PH 993 CG8201-PH 363..637 45..315 411 33.8 Plus
par-1-PR 1046 CG8201-PR 468..742 45..315 411 33.8 Plus
par-1-PT 1058 CG8201-PT 468..742 45..315 411 33.8 Plus
par-1-PP 1141 CG8201-PP 468..742 45..315 411 33.8 Plus
par-1-PX 1170 CG8201-PX 240..514 45..315 411 33.8 Plus
Sik2-PA 1398 CG4290-PA 141..401 53..314 410 34.5 Plus
Sik3-PA 702 CG15072-PA 41..304 53..321 409 35.4 Plus
Sik3-PF 1379 CG42856-PF 41..304 53..321 409 35.4 Plus
Sik3-PE 1382 CG42856-PE 41..304 53..321 409 35.4 Plus
Sik3-PD 1468 CG42856-PD 41..304 53..321 409 35.4 Plus
Sik3-PC 1471 CG18604-PA 41..304 53..321 409 35.4 Plus
Sik3-PB 1471 CG15072-PB 41..304 53..321 409 35.4 Plus
sff-PB 845 CG6114-PB 24..285 59..320 397 34 Plus
sff-PC 851 CG6114-PC 24..285 59..320 397 34 Plus
sff-PA 861 CG6114-PA 24..285 59..320 397 34 Plus
CG12069-PC 356 CG12069-PC 46..304 52..306 396 35.1 Plus
CG12069-PA 356 CG12069-PA 46..304 52..306 396 35.1 Plus
CG8485-PC 860 CG8485-PC 20..304 53..327 393 33.4 Plus
CG8485-PB 860 CG8485-PB 20..304 53..327 393 33.4 Plus
CG8485-PA 860 CG8485-PA 20..304 53..327 393 33.4 Plus
Pka-C3-PA 500 CG6117-PA 190..446 52..306 388 34.2 Plus
Pka-C3-PB 583 CG6117-PB 273..529 52..306 388 34.2 Plus
KP78a-PB 705 CG6715-PB 104..368 59..324 388 35.1 Plus
Akt1-PE 530 CG4006-PE 184..426 52..294 373 33.9 Plus
Akt1-PD 530 CG4006-PD 184..426 52..294 373 33.9 Plus
Akt1-PA 530 CG4006-PA 184..426 52..294 373 33.9 Plus
Akt1-PB 530 CG4006-PB 184..426 52..294 373 33.9 Plus
Akt1-PC 611 CG4006-PC 265..507 52..294 373 33.9 Plus
KP78b-PB 604 CG17216-PB 69..317 59..308 371 34.9 Plus
KP78b-PA 604 CG17216-PA 69..317 59..308 371 34.9 Plus
AMPKalpha-PC 582 CG3051-PC 30..279 55..304 363 30.2 Plus
AMPKalpha-PB 582 CG3051-PB 30..279 55..304 363 30.2 Plus
AMPKalpha-PA 582 CG3051-PA 30..279 55..304 363 30.2 Plus
fu-PA 805 CG6551-PA 4..275 53..329 359 31.2 Plus
Pka-C2-PB 354 CG12066-PB 49..300 57..304 355 35.3 Plus
S6k-PB 490 CG10539-PB 74..322 50..294 355 33.1 Plus
S6k-PA 490 CG10539-PA 74..322 50..294 355 33.1 Plus
Pkc98E-PB 554 CG1954-PB 214..465 44..294 352 33.5 Plus
Pkc53E-PD 525 CG6622-PD 195..438 52..294 350 32.1 Plus
CaMKI-PI 390 CG1495-PI 37..312 59..329 349 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23549-PA 329 GI23549-PA 1..329 1..329 1470 81 Plus
Dmoj\GI23560-PA 329 GI23560-PA 1..329 1..329 1457 81.9 Plus
Dmoj\GI23550-PA 366 GI23550-PA 104..363 48..307 727 51.5 Plus
Dmoj\GI13469-PA 778 GI13469-PA 1..272 36..308 461 35.1 Plus
Dmoj\GI19215-PA 714 GI19215-PA 30..293 53..321 428 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19028-PA 329 GL19028-PA 1..329 1..329 1580 88.4 Plus
Dper\GL22255-PA 416 GL22255-PA 154..413 48..307 733 51.9 Plus
Dper\GL11903-PA 777 GL11903-PA 1..269 36..306 478 38.5 Plus
Dper\GL19216-PA 546 GL19216-PA 238..470 52..287 422 37.7 Plus
Dper\GL10764-PA 617 GL10764-PA 47..317 53..327 422 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19730-PA 329 GA19730-PA 1..329 1..329 1580 88.4 Plus
Dpse\GA15904-PA 416 GA15904-PA 154..413 48..307 733 51.9 Plus
Dpse\GA20166-PA 777 GA20166-PA 1..269 36..306 478 38.5 Plus
Dpse\GA18145-PA 464 GA18145-PA 156..388 52..287 423 37.7 Plus
Dpse\GA24476-PA 712 GA24476-PA 50..320 53..327 421 36.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11336-PA 329 GM11336-PA 1..329 1..329 1783 100 Plus
Dsec\GM23989-PA 421 GM23989-PA 159..418 48..307 732 51.9 Plus
Dsec\GM22133-PA 769 GM22133-PA 1..267 36..305 481 37.9 Plus
Dsec\GM21908-PA 703 GM21908-PA 41..304 53..321 423 35.8 Plus
Dsec\GM12352-PA 488 GM12352-PA 180..412 52..287 422 37.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22216-PA 329 GD22216-PA 1..329 1..329 1783 100 Plus
Dsim\GD18792-PA 421 GD18792-PA 159..418 48..307 731 51.9 Plus
Dsim\GD12112-PA 769 GD12112-PA 1..267 36..305 474 37.8 Plus
Dsim\GD22345-PA 353 GD22345-PA 45..277 52..287 422 37.7 Plus
Dsim\GD16891-PA 356 GD16891-PA 46..304 52..306 401 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20756-PA 331 GJ20756-PA 1..331 1..329 1514 83.1 Plus
Dvir\GJ23510-PA 363 GJ23510-PA 101..360 48..307 721 51.2 Plus
Dvir\GJ11832-PA 781 GJ11832-PA 1..272 36..308 482 37 Plus
Dvir\GJ20287-PA 715 GJ20287-PA 30..298 53..326 430 36.2 Plus
Dvir\GJ17913-PA 476 GJ17913-PA 168..400 52..287 423 37.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18371-PA 331 GK18371-PA 1..331 1..329 1518 84 Plus
Dwil\GK13515-PA 406 GK13515-PA 144..403 48..307 729 52.7 Plus
Dwil\GK17621-PA 787 GK17621-PA 7..276 46..313 468 37 Plus
Dwil\GK15458-PA 498 GK15458-PA 190..422 52..287 422 37.7 Plus
Dwil\GK20917-PA 755 GK20917-PA 49..318 53..327 420 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13219-PA 329 GE13219-PA 1..329 1..329 1755 98.2 Plus
Dyak\GE26150-PA 417 GE26150-PA 155..414 48..307 729 51.9 Plus
Dyak\GE22325-PA 766 GE22325-PA 1..267 36..305 474 37.8 Plus
Dyak\Pka-C1-PA 488 GE10413-PA 180..412 52..287 422 37.7 Plus
Dyak\GE11992-PA 704 GE11992-PA 41..304 53..321 420 35.8 Plus

LD39409.hyp Sequence

Translation from 74 to 1063

> LD39409.hyp
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARN*

LD39409.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-PA 329 CG6620-PA 1..329 1..329 1774 100 Plus
aurA-PA 411 CG3068-PA 149..408 48..307 718 51.9 Plus
SAK-PA 769 CG7186-PA 1..264 36..302 470 38.2 Plus
Pka-C1-PD 353 CG4379-PD 45..277 52..287 412 37.7 Plus
Pka-C1-PC 353 CG4379-PC 45..277 52..287 412 37.7 Plus