Clone LD39460 Report

Search the DGRC for LD39460

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:394
Well:60
Vector:pOT2
Associated Gene/TranscriptCG7544-RA
Protein status:LD39460.pep: gold
Preliminary Size:1850
Sequenced Size:1528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7544 2001-01-01 Release 2 assignment
CG7544 2001-09-19 Blastp of sequenced clone
CG7544 2003-01-01 Sim4 clustering to Release 3
CG7544 2008-04-29 Release 5.5 accounting
CG7544 2008-08-15 Release 5.9 accounting
CG7544 2008-12-18 5.12 accounting

Clone Sequence Records

LD39460.complete Sequence

1528 bp (1528 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058680

> LD39460.complete
TAACAATTGCGATTTTTTGAAAACGAAATATGGTAAAAACTAAGGGAAAC
CAAAAGATAGTCGGCATGCATCCACGTAATGTGTTACGCACGCAGCCCGA
CTATACCAAAATGGCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGT
TGGAGCTCAATGGCAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTT
CGTGAGTTGACCAAAATGCTGTTGAAGGAATATTACGATTTAGATGTGGA
TTTTGCACCCGGAAGTTTGGTGCCCACATTAGCACTACGTTTGAATTACA
TTTTGTGGTTGGAGGATCTAATGGAACCTCTAAATTTGCAGAACATACGT
GGTATAGATATAGGCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGC
CAAGAAAAATGGTTGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACA
TAGAATACGCCAAGGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATA
GAAGTCTATGCTCAACCAGACAACACGAACATCTTTAAGAGCTATTTTGA
GCAGGATCAGCAACAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCT
TCTTCGACTCGAACTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCA
GAGAGACGACCAGCACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACT
CACCTGCGTGGGTGGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGA
GTCTGGAGAACAAGGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTC
AAGGCCAACGTTCCAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGC
GAATGTCAGCACCACTGAATTCCATCAGGGACACACGACTCGGTGGGCGG
TGGCCTGGAGCTTCCACTCGGAGCCACTACAGCAGGGGACAACATAAAAT
TAAGTTACCATTAGCTCTGTTTTAATGTATAAGTTCTTGGAGAATTGCTG
CAACTTTCGAATGTACTGTGACCTTCACCTGTGCTCATCCCAAAAAGCAA
CTCCAAGGCACCTAGAAAGCTTTCGCCTTAAATGGAAATTTGCATGTCAA
CGGTCACTTTGCCACCCAGCTCCACGAACGGAAATTATCGTTTCGCTTTT
ATCATTGACCACAGCTGACCACACACTTCGACGGAAAAAGGCAAACGGAG
TCGAAATGGCAACCGAAATGGAGGCAAACACGCTCACTAAGCACAAGTTG
CCGCCGCTGGTCAACACACCGACGTTTCCACACCTTTGAGCCGGGGAATT
TGGGCGTTTCGCTTGGCCACCATGTGGGATAGCGAATAGCAAATTTTAAT
TGCTGCACAGGCAGGTTCCTGGTTTGCTAATTATTCGACACGAAAATACC
TTTCAATGCAGGGAGAGTATATTAAAAGGGAAATCAATGGCTCTTACAGA
TAGATAGATACTAAGTTGAAAGTGTAATATAATAAAATTGTATACATTCT
TAGTCAGTAAAAAAAAAAAAAAAAAAAA

LD39460.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-RA 1568 CG7544-RA 61..1568 1..1508 7540 100 Plus
CG7544.a 1635 CG7544.a 61..1029 1..969 4845 100 Plus
CG7544-RB 1343 CG7544-RB 61..1029 1..969 4845 100 Plus
CG7544.a 1635 CG7544.a 1122..1635 969..1482 2570 100 Plus
CG7544-RB 1343 CG7544-RB 1122..1343 969..1190 1110 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11036371..11036910 969..1508 2685 99.8 Plus
chr2R 21145070 chr2R 11035611..11036024 362..775 2055 99.8 Plus
chr2R 21145070 chr2R 11035350..11035562 152..364 1065 100 Plus
chr2R 21145070 chr2R 11036084..11036278 775..969 975 100 Plus
chr2R 21145070 chr2R 11035138..11035290 1..153 705 97.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15149170..15149711 969..1510 2710 100 Plus
2R 25286936 2R 15148410..15148823 362..775 2070 100 Plus
2R 25286936 2R 15148149..15148361 152..364 1065 100 Plus
2R 25286936 2R 15148883..15149077 775..969 975 100 Plus
2R 25286936 2R 15147937..15148089 1..153 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15150369..15150910 969..1510 2710 100 Plus
2R 25260384 2R 15149609..15150022 362..775 2070 100 Plus
2R 25260384 2R 15149348..15149560 152..364 1065 100 Plus
2R 25260384 2R 15150082..15150276 775..969 975 100 Plus
2R 25260384 2R 15149136..15149288 1..153 765 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:59:33 has no hits.

LD39460.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:00:24 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11035138..11035289 1..152 97 -> Plus
chr2R 11035351..11035561 153..363 100 -> Plus
chr2R 11035613..11036024 364..775 99 -> Plus
chr2R 11036085..11036278 776..969 100 -> Plus
chr2R 11036372..11036910 970..1508 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:41 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RB 1..918 30..947 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:55 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RB 1..918 30..947 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:31 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 1..918 30..947 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:19 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 1..918 30..947 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:03 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 1..918 30..947 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:11 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 61..1568 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:55 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 61..1568 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:31 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 78..1585 1..1508 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:20 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 61..1568 1..1508 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:03 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 78..1585 1..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:24 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15147937..15148088 1..152 100 -> Plus
2R 15148150..15148360 153..363 100 -> Plus
2R 15148412..15148823 364..775 100 -> Plus
2R 15148884..15149077 776..969 100 -> Plus
2R 15149171..15149709 970..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:24 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15147937..15148088 1..152 100 -> Plus
2R 15148150..15148360 153..363 100 -> Plus
2R 15148412..15148823 364..775 100 -> Plus
2R 15148884..15149077 776..969 100 -> Plus
2R 15149171..15149709 970..1508 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:24 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15147937..15148088 1..152 100 -> Plus
2R 15148150..15148360 153..363 100 -> Plus
2R 15148412..15148823 364..775 100 -> Plus
2R 15148884..15149077 776..969 100 -> Plus
2R 15149171..15149709 970..1508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:31 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11035442..11035593 1..152 100 -> Plus
arm_2R 11035655..11035865 153..363 100 -> Plus
arm_2R 11035917..11036328 364..775 100 -> Plus
arm_2R 11036389..11036582 776..969 100 -> Plus
arm_2R 11036676..11037214 970..1508 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:43 Download gff for LD39460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15149349..15149559 153..363 100 -> Plus
2R 15149611..15150022 364..775 100 -> Plus
2R 15150083..15150276 776..969 100 -> Plus
2R 15150370..15150908 970..1508 100   Plus
2R 15149136..15149287 1..152 100 -> Plus

LD39460.pep Sequence

Translation from 29 to 946

> LD39460.pep
MVKTKGNQKIVGMHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVN
FRNEKTLRELTKMLLKEYYDLDVDFAPGSLVPTLALRLNYILWLEDLMEP
LNLQNIRGIDIGCGSSCIYSLLGAKKNGWHMLALESKPQNIEYAKENVKR
NHMESLIEVYAQPDNTNIFKSYFEQDQQQLQYQFCLCNPPFFDSNLPNPL
GGNTRNPERRPAPNNARTGSQEELTCVGGEVQFVQRIIDESLENKERVRI
FTTMLGVKANVPRILDYLKELQVANVSTTEFHQGHTTRWAVAWSFHSEPL
QQGTT*

LD39460.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12312-PA 308 GF12312-PA 1..306 1..305 1358 81.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20499-PA 305 GG20499-PA 1..305 1..305 1538 92.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21111-PA 302 GH21111-PA 2..294 4..294 1196 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-PB 305 CG7544-PB 1..305 1..305 1618 100 Plus
CG7544-PA 305 CG7544-PA 1..305 1..305 1618 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18716-PA 306 GI18716-PA 4..305 5..305 1219 73.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10611-PA 300 GL10611-PA 5..297 12..304 1280 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20428-PA 305 GA20428-PA 1..302 1..304 1294 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21591-PA 307 GM21591-PA 1..305 1..305 1603 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11099-PA 307 GD11099-PA 1..305 1..305 1616 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21733-PA 314 GJ21733-PA 2..301 4..301 1229 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19702-PA 296 GK19702-PA 1..293 1..296 1183 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13632-PA 305 GE13632-PA 1..305 1..305 1559 93.1 Plus

LD39460.hyp Sequence

Translation from 29 to 946

> LD39460.hyp
MVKTKGNQKIVGMHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVN
FRNEKTLRELTKMLLKEYYDLDVDFAPGSLVPTLALRLNYILWLEDLMEP
LNLQNIRGIDIGCGSSCIYSLLGAKKNGWHMLALESKPQNIEYAKENVKR
NHMESLIEVYAQPDNTNIFKSYFEQDQQQLQYQFCLCNPPFFDSNLPNPL
GGNTRNPERRPAPNNARTGSQEELTCVGGEVQFVQRIIDESLENKERVRI
FTTMLGVKANVPRILDYLKELQVANVSTTEFHQGHTTRWAVAWSFHSEPL
QQGTT*

LD39460.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-PB 305 CG7544-PB 1..305 1..305 1618 100 Plus
CG7544-PA 305 CG7544-PA 1..305 1..305 1618 100 Plus