Clone LD39537 Report

Search the DGRC for LD39537

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:395
Well:37
Vector:pOT2
Associated Gene/TranscriptCG5194-RA
Protein status:LD39537.pep: gold
Preliminary Size:1248
Sequenced Size:1108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5194 2001-01-01 Release 2 assignment
CG5194 2002-06-12 Blastp of sequenced clone
CG5194 2003-01-01 Sim4 clustering to Release 3
CG5194 2008-04-29 Release 5.5 accounting
CG5194 2008-08-15 Release 5.9 accounting
CG5194 2008-12-18 5.12 accounting

Clone Sequence Records

LD39537.complete Sequence

1108 bp (1108 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122182

> LD39537.complete
AAACATTTAACGATAATAAGCATAAGAATGAGCTCTCTTGTTGATACCAG
TCACTCGGATATCGATGACAATGACTCCTTCCACTCGTTCGACCAAAGCG
AAGATATCATGGACAACCTTAGCCTCTCGCTCTCGGAGAGCGACTGCGAC
AGCGCCGCGGACTTTGATTCCGGCTCGGCGGATGAGATTTCCATGGAAAA
AAAAATGGTTGGTGCACCCGCCCAGCTGGGCCAGGGCGCAGGAAATACTT
TGAAGCCCACGCCTTCCGACGTCTTCGTAAAGCCAAAGTCGCCCGTTTTG
GAGGTCCATTCCAGCGACTCATCCACCTGCGATGGCGTCTCCGCTGGCAA
GCCCACACAGGTTGCGGGCTGTTTCAAGTCTCCCAAGAAGTTTACCGTTT
CGCCGATCAGTGAGCAGAAGCAGAGACCAGTGCCCTTGTGTCCCAGAGAT
GTTCCGGGACTTTCCTCGAGCCAGATACCATGCATAAAACACTTTGACCT
TGACCACTCAGTAACAGTCCGAAAAGAGCACCTGATCTCCAATCCCGAAA
CGGAGGCCTTACAAAAACACGCCTTCACCGAAATTTGGATCGATTCGCAG
CAGAAACCTTGCCAGGCCAAGGTTTCTCGCTTGCAGCAGTTTTCTATGGC
CCTGGAGGCCTATTTTGACCAGGATTCTGACAAGAAGGATCCGGAGCCAG
CAAAAACCATCACGCCTGCTCCGAAAAGTGACAAACCCGTGGAGAAGGTG
GTGTATGTGTCTCCCTTTCCGGACATTCCCATACCACCATCAGCTCGAAA
AGAAACTCGCATGTTGAGCGGAGTTAAGCCACCCAATATAGTGCCAGCTG
GCTTTGATTTGACCCGATTGATTGAGTACAATAATCCCAATCACTGGCAC
CGTCGTCCCCACATGCGCACTGGCGATAGCATATAAACTTGATTAGCACA
ACATCTTGATCAACATTGTTATTTTCGTAATCACCACACTCAACTGACCG
ATTGGACGTTCTTTTTGTAAAACTGATATCTTTCTGCAATAAAGGATTCC
GAACTACCAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

LD39537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-RA 1210 CG5194-RA 135..1199 1..1065 5325 100 Plus
CG5194.a 1132 CG5194.a 90..794 1..705 3525 100 Plus
CG5194.a 1132 CG5194.a 791..1131 725..1065 1690 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9001012..9001510 705..207 2315 97.6 Minus
chr3L 24539361 chr3L 9000604..9000961 1063..706 1745 99.2 Minus
chr3L 24539361 chr3L 9001561..9001768 208..1 1025 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9009032..9009530 705..207 2495 100 Minus
3L 28110227 3L 9008622..9008981 1065..706 1800 100 Minus
3L 28110227 3L 9009581..9009788 208..1 1040 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9002132..9002630 705..207 2495 100 Minus
3L 28103327 3L 9001722..9002081 1065..706 1800 100 Minus
3L 28103327 3L 9002681..9002888 208..1 1040 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:23:36 has no hits.

LD39537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:24:39 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9000604..9000961 706..1063 99 <- Minus
chr3L 9001012..9001509 208..705 97 <- Minus
chr3L 9001562..9001768 1..207 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:46 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 28..936 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:17 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 28..936 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:27:57 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 28..936 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:04 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 28..936 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:37:45 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 1..909 28..936 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:48:55 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 64..1126 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:17 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 64..1126 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:57 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 51..1113 1..1063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:04 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 64..1126 1..1063 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:37:45 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5194-RA 51..1113 1..1063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:39 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9009582..9009788 1..207 100   Minus
3L 9008624..9008981 706..1063 100 <- Minus
3L 9009032..9009529 208..705 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:39 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9009582..9009788 1..207 100   Minus
3L 9008624..9008981 706..1063 100 <- Minus
3L 9009032..9009529 208..705 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:39 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9009582..9009788 1..207 100   Minus
3L 9008624..9008981 706..1063 100 <- Minus
3L 9009032..9009529 208..705 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:57 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9001724..9002081 706..1063 100 <- Minus
arm_3L 9002132..9002629 208..705 100 <- Minus
arm_3L 9002682..9002888 1..207 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:50 Download gff for LD39537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9001724..9002081 706..1063 100 <- Minus
3L 9002132..9002629 208..705 100 <- Minus
3L 9002682..9002888 1..207 100   Minus

LD39537.hyp Sequence

Translation from 0 to 935

> LD39537.hyp
KHLTIISIRMSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCD
SAADFDSGSADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVL
EVHSSDSSTCDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRD
VPGLSSSQIPCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQ
QKPCQAKVSRLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKV
VYVSPFPDIPIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWH
RRPHMRTGDSI*

LD39537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 302 CG5194-PA 1..302 10..311 1594 100 Plus
CG5194-PB 296 CG5194-PB 1..296 10..311 1547 98 Plus

LD39537.pep Sequence

Translation from 27 to 935

> LD39537.pep
MSSLVDTSHSDIDDNDSFHSFDQSEDIMDNLSLSLSESDCDSAADFDSGS
ADEISMEKKMVGAPAQLGQGAGNTLKPTPSDVFVKPKSPVLEVHSSDSST
CDGVSAGKPTQVAGCFKSPKKFTVSPISEQKQRPVPLCPRDVPGLSSSQI
PCIKHFDLDHSVTVRKEHLISNPETEALQKHAFTEIWIDSQQKPCQAKVS
RLQQFSMALEAYFDQDSDKKDPEPAKTITPAPKSDKPVEKVVYVSPFPDI
PIPPSARKETRMLSGVKPPNIVPAGFDLTRLIEYNNPNHWHRRPHMRTGD
SI*

LD39537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10131-PA 282 GF10131-PA 7..277 7..299 214 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15042-PA 306 GG15042-PA 1..305 1..302 919 68.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14957-PA 151 GH14957-PA 1..142 150..293 258 41.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5194-PA 302 CG5194-PA 1..302 1..302 1594 100 Plus
CG5194-PB 296 CG5194-PB 1..296 1..302 1547 98 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11483-PA 256 GI11483-PA 17..252 13..298 300 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23928-PA 190 GL23928-PA 57..189 149..302 180 35 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24896-PA 310 GM24896-PA 1..310 1..302 1227 78.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12946-PA 311 GD12946-PA 1..311 1..302 1227 80.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13678-PA 313 GJ13678-PA 17..304 13..293 304 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22731-PA 252 GK22731-PA 91..247 139..294 199 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21265-PA 314 GE21265-PA 1..313 1..302 916 67.9 Plus