Clone LD39604 Report

Search the DGRC for LD39604

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:396
Well:4
Vector:pOT2
Associated Gene/TranscriptSesn-RA
Protein status:LD39604.pep: gold
Preliminary Size:3088
Sequenced Size:3112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11299 2001-11-29 Blastp of sequenced clone
CG11299 2008-04-29 Release 5.5 accounting
CG11299 2008-08-15 Release 5.9 accounting
CG11299 2008-12-18 5.12 accounting

Clone Sequence Records

LD39604.complete Sequence

3112 bp (3112 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069626

> LD39604.complete
CCGCGTTCAGTTGTCCGGCTAGAAAAGCGGAAGACCGGGAAATCCAGACG
CGCTACAGACGCCCGATATCTGCTCCCACTCTCAGCGCAAGATCGCGGGA
AATCAGGAAGCTCCGAAAACATCGGATAACCGTTTTTATTTTTATTCCCC
TTTGGTTCGTTCTCGCCTCCGTTTCTTCTGTTGCTTCTGTTACTTCTGTT
TTCGTGTCTTAAGTTTCGGAGCCCTTCGCCGATTTCCAGCAATTAGTTAC
TACATCATATATGTTCTGTGTTATCAAAAACGCGAGCGAAAGAAGCGCTC
TATCTGCGATTGTAAAGACAAACACCACAAGAAAGTAGCTGTGTGCCCCT
CGGGCAAATGAACCGAAATTAAAGGAGATTACAAACATCGCTATCAAGCA
AATGTAGAGACTGTTAGTCCGGCGAACAAAGGCTAGCAACATCTGAGGAG
CACAAGCACGTGCAGAGTGGAAGGGTCGCCAGCTCAAAACGACAAATGAA
AACCAAAAACCAGACCAACATCATCTGCTCCAACTGCCAATGCTTTAGCC
ACTCGAATCGGGGAATAGCCATCACCGACGAGAAGAACGTCCTGCGGATC
CAGAGCTACACCTACAAGTGCTTGAACCACAATCCGCGACCTCGGATATT
CCGCTGATAGTGATAGTGGACTCTGGCTGCAGAGAGAAGAAGACCCTAGC
CTGACCACACCAGACCAGCATCGCAATCAGAAGCAGCAGTTTAAGAAAAT
CTGGTTTGGCTCCAGCTCCAGCTCCAGCGATCCAATCCGCTCTGATACGA
TACGATACGATACGATTCGATTCGGTACTATACGATCCGCGGACGAGCCT
CCTGCTTTGGTGCATTTCCAGTTTGGCGGCTGCTCCACTTTCGTGGCTCC
ATAAACAAAGAGCCGGGCGAAAACTGGTTATTTTCTCACTGCGATCGAAG
CTGCAGCTACCAACTGCAATCGACTGCGACCTCTGATTCCGAATCCGAGC
ACACGTCGCATCCACATCCAACTCGACTCGATCCCTCCGCCAGACTCATG
TACTACGCCGTCGATTACTACGCGGATATGGGACAAATCTCTCAAGATTG
TTTCGCTGCAACGCAAACTGGAGCATCCGACTTTGACATGGACGAGCTCG
ATGACCTGGACCAGGTGACCCAAGTGATTGGATATCATCCCCAGTTCCAC
GATCACTTCCTGGCCACCCAGAACTTCATTATGAAGGGCGATGGTCCGCT
GCCTAACGATTACAGATACTACTTGGCCATAATTGCTGCTGCCCGCCATC
AGTGTCCGTATCTGGTGAAGCGCTACGAGAAGGAGTTCATCAACCAGGGC
GGCGATAGTGCCTGGCTGGGCGGCCTGGACTTTATACCCGCCAAACTACG
TGCCATATACGATATCAATAAAATATTAGCCCATCGGCCCTGGCTGCTGC
GCAAGGAGCATATCGAGCGGCTCACCAAGGGGAAGAACAGCTGGTCGCTG
TCGGAGGTGGTGCACGCCATGGTCCTGCTCTCGCACTTCCACTCGCTGTC
CTCCTTTGTGTTCTCCTGCGGCCTCACACAAAAGCTGGACGGGCTGTCCA
GTCCCAAGCTGAAGAGTCCGCCCGCAGCAGTGGCGGCCCTCGCACCCACC
ATTCTCATCACTCCCACCTCGCCGACGGAGCCGCAGAAGGGGAAGCCAGT
GCTGGCGGAGATCTCGCTCAACAATGCAAATCCGGATTACGACAGCCAGA
CCGCAGCGAGCAGTAATGGAGGAGCTCCACCGGACTCGGCAAATGCGGTT
GCGGATGGACCCGATGCAACGACCCTTAACGGATATTTGGCCACGGCGCA
GCAGCTGCCGCAGCAGCACGGCATCAGTGTGGAGACGCTAATGGAGCGCA
TGAAGGTCCTGTCCCAGAAGCAGGACGAGTGCAGCGAGGCGGAGCTGAGC
AGCCGCTTCCAGAAGGTGGAGCAGCAGACGGCGGAGCTGGCGGCCGTGAC
TCCGGAGGCGGCTGTGGGCGTGCCCACCAACCTGTCGCACTACGTGGACG
ATGCCAACTTCATTTACCAGGACTTTGCCCGGCGCGGCACCGAGAGCATC
AACACGTTTCGCATCCAGGACTACTCTTGGGAGGATCACGGCTACTCGCT
AGTGGACGGATTGTACAACGATGTGGGCATCTTCTTGGACGCCAAGTTTC
GGGCGGCCTACAATCTCACCTACTGCACCATGGGCGGCATCAAGAATGTG
GACACGTCCAAGTTCCGGCGGGCCATTTGGAACTACATCCAGTGCATCTA
CGGCATTCGCCACGACGACTACGACTATGGCGAAGTGAACCAGCTCCTGG
TGCGTCCCCTGAAAATGTTTATTAAGACAGCCTGCTGCTTCCCCGAGCGA
ATCACCACCAAGGACTACGATAGTGTGCTGGTCGAGCTGCAGGACAGTGA
AAAGGTTCATGTGAATCTGATGATAATGGAAGCCCGTAATCAGGCCGAGT
TACTCTATGCTCTGCGCGAGATAATGCGCTATATGACTTGATCTCATTAA
GTGAATAAACATACATACGTACGAGTATATATATATACATACACGCCCAA
AAACCACTCACCACACACATACCCACACATGCATAAAACATTTTGTTATT
TTGAGAGAGCGCATCGGAAATTCGGCGAATCGGAAACGGAAACGGTATCT
GAAGGATCGATCCCAGAGGCAGGAAGAGCCGCGAAAATACTGTTTTGAAC
ACAACGAAAAGATGGAGTAAATGGAGCGTGTGCTAAGCTACATGGATAGC
AATTAATAGCCATTCGATATCGGTGTCCATTAAATGAATGTGAATCGTTT
ACTACTCAATTACCAATAGTCTGTGTCTATGGTTAGCCAACACGCCAATT
AATCACGTATGCAGCCACAATGCAAGAATGGAAAATAATTCCCAAATTGA
GCTGAACTCAAAAGCCAAACCTTCTGTCTGTTTCCCTTTCGTGAATGTGC
AAGCAATAATCACTGTACATATGTATTATGTTTTGTTTAATTATTTTAGC
GCAATAAATACAACTTTATTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

LD39604.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11299.s 4078 CG11299.s 101..3179 1..3079 15395 100 Plus
CG11299-RA 3255 CG11299-RA 101..3179 1..3079 15395 100 Plus
CG11299.u 4387 CG11299.u 101..3179 1..3079 15395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19608383..19609049 432..1098 3275 99.4 Plus
chr2R 21145070 chr2R 19618715..19619338 2453..3076 3075 99.5 Plus
chr2R 21145070 chr2R 19617310..19617684 1466..1840 1845 99.5 Plus
chr2R 21145070 chr2R 19617807..19618126 1840..2159 1540 98.8 Plus
chr2R 21145070 chr2R 19600818..19601051 198..432 1110 99.1 Plus
chr2R 21145070 chr2R 19600074..19600271 1..198 990 100 Plus
chr2R 21145070 chr2R 19615204..19615390 1099..1285 920 99.5 Plus
chr2R 21145070 chr2R 19617064..19617246 1285..1467 915 100 Plus
chr2R 21145070 chr2R 19618194..19618375 2162..2343 880 98.9 Plus
chr2R 21145070 chr2R 19618544..19618660 2340..2456 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23722209..23722875 432..1098 3335 100 Plus
2R 25286936 2R 23732560..23733186 2453..3079 3135 100 Plus
2R 25286936 2R 23731155..23731529 1466..1840 1875 100 Plus
2R 25286936 2R 23731652..23731971 1840..2159 1600 100 Plus
2R 25286936 2R 23714665..23714899 198..432 1175 100 Plus
2R 25286936 2R 23713921..23714118 1..198 990 100 Plus
2R 25286936 2R 23729049..23729235 1099..1285 935 100 Plus
2R 25286936 2R 23732036..23732220 2159..2343 925 100 Plus
2R 25286936 2R 23730909..23731091 1285..1467 915 100 Plus
2R 25286936 2R 23732389..23732505 2340..2456 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23723408..23724074 432..1098 3335 100 Plus
2R 25260384 2R 23733759..23734385 2453..3079 3135 100 Plus
2R 25260384 2R 23732354..23732728 1466..1840 1875 100 Plus
2R 25260384 2R 23732851..23733170 1840..2159 1600 100 Plus
2R 25260384 2R 23715864..23716098 198..432 1175 100 Plus
2R 25260384 2R 23715120..23715317 1..198 990 100 Plus
2R 25260384 2R 23730248..23730434 1099..1285 935 100 Plus
2R 25260384 2R 23733235..23733419 2159..2343 925 100 Plus
2R 25260384 2R 23732108..23732290 1285..1467 915 100 Plus
2R 25260384 2R 23733588..23733704 2340..2456 585 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:32:08 has no hits.

LD39604.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:08 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19600074..19600271 1..198 100 -> Plus
chr2R 19600819..19601051 199..432 99 -> Plus
chr2R 19608384..19609049 433..1098 92 -> Plus
chr2R 19615204..19615389 1099..1284 99 -> Plus
chr2R 19617064..19617246 1285..1467 100 -> Plus
chr2R 19617312..19617684 1468..1840 99 -> Plus
chr2R 19617808..19618126 1841..2159 98 -> Plus
chr2R 19618192..19618375 2160..2343 97 -> Plus
chr2R 19618548..19618658 2344..2454 100 -> Plus
chr2R 19618717..19618820 2455..2558 100 == Plus
chr2R 19618898..19619338 2636..3076 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:50:12 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1..1494 1048..2541 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:26:00 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RC 1..1494 1048..2541 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:18 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1..1494 1048..2541 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:53:19 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1..1494 1048..2541 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:06 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1..1494 1048..2541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:12 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RA 20..3095 1..3076 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:26:00 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 20..3095 1..3076 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:18 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 22..3097 1..3076 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:53:19 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RA 20..3095 1..3076 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:06 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 22..3097 1..3076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:08 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23730909..23731091 1285..1467 100 -> Plus
2R 23713921..23714118 1..198 100 -> Plus
2R 23714666..23714899 199..432 100 -> Plus
2R 23722210..23722875 433..1098 100 -> Plus
2R 23729049..23729234 1099..1284 100 -> Plus
2R 23731157..23731529 1468..1840 100 -> Plus
2R 23731653..23731971 1841..2159 100 -> Plus
2R 23732037..23732220 2160..2343 100 -> Plus
2R 23732393..23732503 2344..2454 100 -> Plus
2R 23732562..23733183 2455..3076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:08 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23730909..23731091 1285..1467 100 -> Plus
2R 23713921..23714118 1..198 100 -> Plus
2R 23714666..23714899 199..432 100 -> Plus
2R 23722210..23722875 433..1098 100 -> Plus
2R 23729049..23729234 1099..1284 100 -> Plus
2R 23731157..23731529 1468..1840 100 -> Plus
2R 23731653..23731971 1841..2159 100 -> Plus
2R 23732037..23732220 2160..2343 100 -> Plus
2R 23732393..23732503 2344..2454 100 -> Plus
2R 23732562..23733183 2455..3076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:08 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23730909..23731091 1285..1467 100 -> Plus
2R 23713921..23714118 1..198 100 -> Plus
2R 23714666..23714899 199..432 100 -> Plus
2R 23722210..23722875 433..1098 100 -> Plus
2R 23729049..23729234 1099..1284 100 -> Plus
2R 23731157..23731529 1468..1840 100 -> Plus
2R 23731653..23731971 1841..2159 100 -> Plus
2R 23732037..23732220 2160..2343 100 -> Plus
2R 23732393..23732503 2344..2454 100 -> Plus
2R 23732562..23733183 2455..3076 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:18 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19619916..19620026 2344..2454 100 -> Plus
arm_2R 19601444..19601641 1..198 100 -> Plus
arm_2R 19602189..19602422 199..432 100 -> Plus
arm_2R 19609733..19610398 433..1098 100 -> Plus
arm_2R 19616572..19616757 1099..1284 100 -> Plus
arm_2R 19618432..19618614 1285..1467 100 -> Plus
arm_2R 19618680..19619052 1468..1840 100 -> Plus
arm_2R 19619176..19619494 1841..2159 100 -> Plus
arm_2R 19619560..19619743 2160..2343 100 -> Plus
arm_2R 19620085..19620706 2455..3076 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:29:25 Download gff for LD39604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23715883..23716116 199..432 100 -> Plus
2R 23723427..23724092 433..1098 100 -> Plus
2R 23730266..23730451 1099..1284 100 -> Plus
2R 23732126..23732308 1285..1467 100 -> Plus
2R 23732374..23732746 1468..1840 100 -> Plus
2R 23732870..23733188 1841..2159 100 -> Plus
2R 23733254..23733437 2160..2343 100 -> Plus
2R 23733610..23733720 2344..2454 100 -> Plus
2R 23733779..23734400 2455..3076 100   Plus
2R 23715138..23715335 1..198 100 -> Plus

LD39604.hyp Sequence

Translation from 1047 to 2540

> LD39604.hyp
MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF
HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ
GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS
LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP
TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA
VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL
SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES
INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN
VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE
RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*

LD39604.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-PC 497 CG11299-PC 1..497 1..497 2613 100 Plus
Sesn-PB 497 CG11299-PB 1..497 1..497 2613 100 Plus
Sesn-PA 497 CG11299-PA 1..497 1..497 2613 100 Plus
Sesn-PD 467 CG11299-PD 1..467 31..497 2451 100 Plus

LD39604.pep Sequence

Translation from 1047 to 2540

> LD39604.pep
MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF
HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ
GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS
LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP
TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA
VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL
SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES
INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN
VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE
RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*

LD39604.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13078-PA 501 GF13078-PA 1..501 1..497 2342 88.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22883-PA 499 GG22883-PA 1..499 1..497 2584 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21308-PA 531 GH21308-PA 1..531 1..497 1983 73 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-PC 497 CG11299-PC 1..497 1..497 2613 100 Plus
Sesn-PB 497 CG11299-PB 1..497 1..497 2613 100 Plus
Sesn-PA 497 CG11299-PA 1..497 1..497 2613 100 Plus
Sesn-PD 467 CG11299-PD 1..467 31..497 2451 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19742-PA 546 GI19742-PA 1..546 1..497 1911 69.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16884-PA 528 GL16884-PA 1..528 1..497 2075 78.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10899-PB 509 GA10899-PB 1..509 1..497 2032 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16042-PA 484 GM16042-PA 1..484 1..497 2507 94.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11791-PA 497 GD11791-PA 1..497 1..497 2674 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18015-PA 485 GJ18015-PA 1..485 1..497 2018 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23074-PA 490 GK23074-PA 1..490 1..497 2039 78.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14320-PA 495 GE14320-PA 1..495 1..497 2579 96 Plus