BDGP Sequence Production Resources |
Search the DGRC for LD39604
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 396 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | Sesn-RA |
Protein status: | LD39604.pep: gold |
Preliminary Size: | 3088 |
Sequenced Size: | 3112 |
Gene | Date | Evidence |
---|---|---|
CG11299 | 2001-11-29 | Blastp of sequenced clone |
CG11299 | 2008-04-29 | Release 5.5 accounting |
CG11299 | 2008-08-15 | Release 5.9 accounting |
CG11299 | 2008-12-18 | 5.12 accounting |
3112 bp (3112 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069626
> LD39604.complete CCGCGTTCAGTTGTCCGGCTAGAAAAGCGGAAGACCGGGAAATCCAGACG CGCTACAGACGCCCGATATCTGCTCCCACTCTCAGCGCAAGATCGCGGGA AATCAGGAAGCTCCGAAAACATCGGATAACCGTTTTTATTTTTATTCCCC TTTGGTTCGTTCTCGCCTCCGTTTCTTCTGTTGCTTCTGTTACTTCTGTT TTCGTGTCTTAAGTTTCGGAGCCCTTCGCCGATTTCCAGCAATTAGTTAC TACATCATATATGTTCTGTGTTATCAAAAACGCGAGCGAAAGAAGCGCTC TATCTGCGATTGTAAAGACAAACACCACAAGAAAGTAGCTGTGTGCCCCT CGGGCAAATGAACCGAAATTAAAGGAGATTACAAACATCGCTATCAAGCA AATGTAGAGACTGTTAGTCCGGCGAACAAAGGCTAGCAACATCTGAGGAG CACAAGCACGTGCAGAGTGGAAGGGTCGCCAGCTCAAAACGACAAATGAA AACCAAAAACCAGACCAACATCATCTGCTCCAACTGCCAATGCTTTAGCC ACTCGAATCGGGGAATAGCCATCACCGACGAGAAGAACGTCCTGCGGATC CAGAGCTACACCTACAAGTGCTTGAACCACAATCCGCGACCTCGGATATT CCGCTGATAGTGATAGTGGACTCTGGCTGCAGAGAGAAGAAGACCCTAGC CTGACCACACCAGACCAGCATCGCAATCAGAAGCAGCAGTTTAAGAAAAT CTGGTTTGGCTCCAGCTCCAGCTCCAGCGATCCAATCCGCTCTGATACGA TACGATACGATACGATTCGATTCGGTACTATACGATCCGCGGACGAGCCT CCTGCTTTGGTGCATTTCCAGTTTGGCGGCTGCTCCACTTTCGTGGCTCC ATAAACAAAGAGCCGGGCGAAAACTGGTTATTTTCTCACTGCGATCGAAG CTGCAGCTACCAACTGCAATCGACTGCGACCTCTGATTCCGAATCCGAGC ACACGTCGCATCCACATCCAACTCGACTCGATCCCTCCGCCAGACTCATG TACTACGCCGTCGATTACTACGCGGATATGGGACAAATCTCTCAAGATTG TTTCGCTGCAACGCAAACTGGAGCATCCGACTTTGACATGGACGAGCTCG ATGACCTGGACCAGGTGACCCAAGTGATTGGATATCATCCCCAGTTCCAC GATCACTTCCTGGCCACCCAGAACTTCATTATGAAGGGCGATGGTCCGCT GCCTAACGATTACAGATACTACTTGGCCATAATTGCTGCTGCCCGCCATC AGTGTCCGTATCTGGTGAAGCGCTACGAGAAGGAGTTCATCAACCAGGGC GGCGATAGTGCCTGGCTGGGCGGCCTGGACTTTATACCCGCCAAACTACG TGCCATATACGATATCAATAAAATATTAGCCCATCGGCCCTGGCTGCTGC GCAAGGAGCATATCGAGCGGCTCACCAAGGGGAAGAACAGCTGGTCGCTG TCGGAGGTGGTGCACGCCATGGTCCTGCTCTCGCACTTCCACTCGCTGTC CTCCTTTGTGTTCTCCTGCGGCCTCACACAAAAGCTGGACGGGCTGTCCA GTCCCAAGCTGAAGAGTCCGCCCGCAGCAGTGGCGGCCCTCGCACCCACC ATTCTCATCACTCCCACCTCGCCGACGGAGCCGCAGAAGGGGAAGCCAGT GCTGGCGGAGATCTCGCTCAACAATGCAAATCCGGATTACGACAGCCAGA CCGCAGCGAGCAGTAATGGAGGAGCTCCACCGGACTCGGCAAATGCGGTT GCGGATGGACCCGATGCAACGACCCTTAACGGATATTTGGCCACGGCGCA GCAGCTGCCGCAGCAGCACGGCATCAGTGTGGAGACGCTAATGGAGCGCA TGAAGGTCCTGTCCCAGAAGCAGGACGAGTGCAGCGAGGCGGAGCTGAGC AGCCGCTTCCAGAAGGTGGAGCAGCAGACGGCGGAGCTGGCGGCCGTGAC TCCGGAGGCGGCTGTGGGCGTGCCCACCAACCTGTCGCACTACGTGGACG ATGCCAACTTCATTTACCAGGACTTTGCCCGGCGCGGCACCGAGAGCATC AACACGTTTCGCATCCAGGACTACTCTTGGGAGGATCACGGCTACTCGCT AGTGGACGGATTGTACAACGATGTGGGCATCTTCTTGGACGCCAAGTTTC GGGCGGCCTACAATCTCACCTACTGCACCATGGGCGGCATCAAGAATGTG GACACGTCCAAGTTCCGGCGGGCCATTTGGAACTACATCCAGTGCATCTA CGGCATTCGCCACGACGACTACGACTATGGCGAAGTGAACCAGCTCCTGG TGCGTCCCCTGAAAATGTTTATTAAGACAGCCTGCTGCTTCCCCGAGCGA ATCACCACCAAGGACTACGATAGTGTGCTGGTCGAGCTGCAGGACAGTGA AAAGGTTCATGTGAATCTGATGATAATGGAAGCCCGTAATCAGGCCGAGT TACTCTATGCTCTGCGCGAGATAATGCGCTATATGACTTGATCTCATTAA GTGAATAAACATACATACGTACGAGTATATATATATACATACACGCCCAA AAACCACTCACCACACACATACCCACACATGCATAAAACATTTTGTTATT TTGAGAGAGCGCATCGGAAATTCGGCGAATCGGAAACGGAAACGGTATCT GAAGGATCGATCCCAGAGGCAGGAAGAGCCGCGAAAATACTGTTTTGAAC ACAACGAAAAGATGGAGTAAATGGAGCGTGTGCTAAGCTACATGGATAGC AATTAATAGCCATTCGATATCGGTGTCCATTAAATGAATGTGAATCGTTT ACTACTCAATTACCAATAGTCTGTGTCTATGGTTAGCCAACACGCCAATT AATCACGTATGCAGCCACAATGCAAGAATGGAAAATAATTCCCAAATTGA GCTGAACTCAAAAGCCAAACCTTCTGTCTGTTTCCCTTTCGTGAATGTGC AAGCAATAATCACTGTACATATGTATTATGTTTTGTTTAATTATTTTAGC GCAATAAATACAACTTTATTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19608383..19609049 | 432..1098 | 3275 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 19618715..19619338 | 2453..3076 | 3075 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 19617310..19617684 | 1466..1840 | 1845 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 19617807..19618126 | 1840..2159 | 1540 | 98.8 | Plus |
chr2R | 21145070 | chr2R | 19600818..19601051 | 198..432 | 1110 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 19600074..19600271 | 1..198 | 990 | 100 | Plus |
chr2R | 21145070 | chr2R | 19615204..19615390 | 1099..1285 | 920 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 19617064..19617246 | 1285..1467 | 915 | 100 | Plus |
chr2R | 21145070 | chr2R | 19618194..19618375 | 2162..2343 | 880 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 19618544..19618660 | 2340..2456 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23722209..23722875 | 432..1098 | 3335 | 100 | Plus |
2R | 25286936 | 2R | 23732560..23733186 | 2453..3079 | 3135 | 100 | Plus |
2R | 25286936 | 2R | 23731155..23731529 | 1466..1840 | 1875 | 100 | Plus |
2R | 25286936 | 2R | 23731652..23731971 | 1840..2159 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 23714665..23714899 | 198..432 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 23713921..23714118 | 1..198 | 990 | 100 | Plus |
2R | 25286936 | 2R | 23729049..23729235 | 1099..1285 | 935 | 100 | Plus |
2R | 25286936 | 2R | 23732036..23732220 | 2159..2343 | 925 | 100 | Plus |
2R | 25286936 | 2R | 23730909..23731091 | 1285..1467 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23732389..23732505 | 2340..2456 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23723408..23724074 | 432..1098 | 3335 | 100 | Plus |
2R | 25260384 | 2R | 23733759..23734385 | 2453..3079 | 3135 | 100 | Plus |
2R | 25260384 | 2R | 23732354..23732728 | 1466..1840 | 1875 | 100 | Plus |
2R | 25260384 | 2R | 23732851..23733170 | 1840..2159 | 1600 | 100 | Plus |
2R | 25260384 | 2R | 23715864..23716098 | 198..432 | 1175 | 100 | Plus |
2R | 25260384 | 2R | 23715120..23715317 | 1..198 | 990 | 100 | Plus |
2R | 25260384 | 2R | 23730248..23730434 | 1099..1285 | 935 | 100 | Plus |
2R | 25260384 | 2R | 23733235..23733419 | 2159..2343 | 925 | 100 | Plus |
2R | 25260384 | 2R | 23732108..23732290 | 1285..1467 | 915 | 100 | Plus |
2R | 25260384 | 2R | 23733588..23733704 | 2340..2456 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19600074..19600271 | 1..198 | 100 | -> | Plus |
chr2R | 19600819..19601051 | 199..432 | 99 | -> | Plus |
chr2R | 19608384..19609049 | 433..1098 | 92 | -> | Plus |
chr2R | 19615204..19615389 | 1099..1284 | 99 | -> | Plus |
chr2R | 19617064..19617246 | 1285..1467 | 100 | -> | Plus |
chr2R | 19617312..19617684 | 1468..1840 | 99 | -> | Plus |
chr2R | 19617808..19618126 | 1841..2159 | 98 | -> | Plus |
chr2R | 19618192..19618375 | 2160..2343 | 97 | -> | Plus |
chr2R | 19618548..19618658 | 2344..2454 | 100 | -> | Plus |
chr2R | 19618717..19618820 | 2455..2558 | 100 | == | Plus |
chr2R | 19618898..19619338 | 2636..3076 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11299-RC | 1..1494 | 1048..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RC | 1..1494 | 1048..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RA | 1..1494 | 1048..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11299-RC | 1..1494 | 1048..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RA | 1..1494 | 1048..2541 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11299-RA | 20..3095 | 1..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RA | 20..3095 | 1..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RA | 22..3097 | 1..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11299-RA | 20..3095 | 1..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sesn-RA | 22..3097 | 1..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23730909..23731091 | 1285..1467 | 100 | -> | Plus |
2R | 23713921..23714118 | 1..198 | 100 | -> | Plus |
2R | 23714666..23714899 | 199..432 | 100 | -> | Plus |
2R | 23722210..23722875 | 433..1098 | 100 | -> | Plus |
2R | 23729049..23729234 | 1099..1284 | 100 | -> | Plus |
2R | 23731157..23731529 | 1468..1840 | 100 | -> | Plus |
2R | 23731653..23731971 | 1841..2159 | 100 | -> | Plus |
2R | 23732037..23732220 | 2160..2343 | 100 | -> | Plus |
2R | 23732393..23732503 | 2344..2454 | 100 | -> | Plus |
2R | 23732562..23733183 | 2455..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23730909..23731091 | 1285..1467 | 100 | -> | Plus |
2R | 23713921..23714118 | 1..198 | 100 | -> | Plus |
2R | 23714666..23714899 | 199..432 | 100 | -> | Plus |
2R | 23722210..23722875 | 433..1098 | 100 | -> | Plus |
2R | 23729049..23729234 | 1099..1284 | 100 | -> | Plus |
2R | 23731157..23731529 | 1468..1840 | 100 | -> | Plus |
2R | 23731653..23731971 | 1841..2159 | 100 | -> | Plus |
2R | 23732037..23732220 | 2160..2343 | 100 | -> | Plus |
2R | 23732393..23732503 | 2344..2454 | 100 | -> | Plus |
2R | 23732562..23733183 | 2455..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23730909..23731091 | 1285..1467 | 100 | -> | Plus |
2R | 23713921..23714118 | 1..198 | 100 | -> | Plus |
2R | 23714666..23714899 | 199..432 | 100 | -> | Plus |
2R | 23722210..23722875 | 433..1098 | 100 | -> | Plus |
2R | 23729049..23729234 | 1099..1284 | 100 | -> | Plus |
2R | 23731157..23731529 | 1468..1840 | 100 | -> | Plus |
2R | 23731653..23731971 | 1841..2159 | 100 | -> | Plus |
2R | 23732037..23732220 | 2160..2343 | 100 | -> | Plus |
2R | 23732393..23732503 | 2344..2454 | 100 | -> | Plus |
2R | 23732562..23733183 | 2455..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19619916..19620026 | 2344..2454 | 100 | -> | Plus |
arm_2R | 19601444..19601641 | 1..198 | 100 | -> | Plus |
arm_2R | 19602189..19602422 | 199..432 | 100 | -> | Plus |
arm_2R | 19609733..19610398 | 433..1098 | 100 | -> | Plus |
arm_2R | 19616572..19616757 | 1099..1284 | 100 | -> | Plus |
arm_2R | 19618432..19618614 | 1285..1467 | 100 | -> | Plus |
arm_2R | 19618680..19619052 | 1468..1840 | 100 | -> | Plus |
arm_2R | 19619176..19619494 | 1841..2159 | 100 | -> | Plus |
arm_2R | 19619560..19619743 | 2160..2343 | 100 | -> | Plus |
arm_2R | 19620085..19620706 | 2455..3076 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23715883..23716116 | 199..432 | 100 | -> | Plus |
2R | 23723427..23724092 | 433..1098 | 100 | -> | Plus |
2R | 23730266..23730451 | 1099..1284 | 100 | -> | Plus |
2R | 23732126..23732308 | 1285..1467 | 100 | -> | Plus |
2R | 23732374..23732746 | 1468..1840 | 100 | -> | Plus |
2R | 23732870..23733188 | 1841..2159 | 100 | -> | Plus |
2R | 23733254..23733437 | 2160..2343 | 100 | -> | Plus |
2R | 23733610..23733720 | 2344..2454 | 100 | -> | Plus |
2R | 23733779..23734400 | 2455..3076 | 100 | Plus | |
2R | 23715138..23715335 | 1..198 | 100 | -> | Plus |
Translation from 1047 to 2540
> LD39604.hyp MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sesn-PC | 497 | CG11299-PC | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PB | 497 | CG11299-PB | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PA | 497 | CG11299-PA | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PD | 467 | CG11299-PD | 1..467 | 31..497 | 2451 | 100 | Plus |
Translation from 1047 to 2540
> LD39604.pep MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13078-PA | 501 | GF13078-PA | 1..501 | 1..497 | 2342 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22883-PA | 499 | GG22883-PA | 1..499 | 1..497 | 2584 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21308-PA | 531 | GH21308-PA | 1..531 | 1..497 | 1983 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sesn-PC | 497 | CG11299-PC | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PB | 497 | CG11299-PB | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PA | 497 | CG11299-PA | 1..497 | 1..497 | 2613 | 100 | Plus |
Sesn-PD | 467 | CG11299-PD | 1..467 | 31..497 | 2451 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19742-PA | 546 | GI19742-PA | 1..546 | 1..497 | 1911 | 69.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16884-PA | 528 | GL16884-PA | 1..528 | 1..497 | 2075 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10899-PB | 509 | GA10899-PB | 1..509 | 1..497 | 2032 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16042-PA | 484 | GM16042-PA | 1..484 | 1..497 | 2507 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11791-PA | 497 | GD11791-PA | 1..497 | 1..497 | 2674 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18015-PA | 485 | GJ18015-PA | 1..485 | 1..497 | 2018 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23074-PA | 490 | GK23074-PA | 1..490 | 1..497 | 2039 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14320-PA | 495 | GE14320-PA | 1..495 | 1..497 | 2579 | 96 | Plus |