Clone LD39612 Report

Search the DGRC for LD39612

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:396
Well:12
Vector:pOT2
Associated Gene/TranscriptCG9723-RA
Protein status:LD39612.pep: gold
Preliminary Size:1826
Sequenced Size:1715

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9723 2001-01-01 Release 2 assignment
CG9723 2001-11-29 Blastp of sequenced clone
CG9723 2003-01-01 Sim4 clustering to Release 3
CG9723 2008-04-29 Release 5.5 accounting
CG9723 2008-08-15 Release 5.9 accounting
CG9723 2008-12-18 5.12 accounting

Clone Sequence Records

LD39612.complete Sequence

1715 bp (1715 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069627

> LD39612.complete
TAAACATCAAAACATCAAGCATAAGCAAGTCAGCATTTAACAAGCGAACG
TCCTGCGAGAGCAACAGACTGAAAGCGCACTGATTGATAAGATTAACGCC
ATTGCAACCGTTCATAATGCATTCGGCTGGACTACTGATGCTAACCGTGG
CTGGATATTTCACATCGGGTATTCCTGGCAATACGGCTTCCTCGGACGTC
GCCTACCTGACGCCGGGCACATACATCAATTTGTCGGAGAACATCTTGGG
ACTGCAGACTCTGCGCACGTTCTGCTATCCGGGTAAACGGCTGACGGTGT
CAAGTCTCTTCGAGACTGTGGAGTTCGTCCTGGCCATCGGGAGCGATGAT
TATTCCCAGTACGGTGGGAAGACGCCGGAGGAGGTGTTGCAGCACTACAA
GGACAAGCAATCGCTGTTCAGCATCACCCTGTTCGCGCAGAAGCGCCAGC
TGCTGCAGCTCTCGCCCTTCGAGCAGCAGTGCATCGGGATTTCCTCCCGC
CAGGCGTACACCGTCATTCTGAATAGCATTCCGCTGGATCTGTGGCGTCT
CGCACAGTTCGCCGTCGGCATACTGATCCTCTTCAGCGCCCGGCGGCTAG
CAAAGAACAGTGTGTTCTACTATCTGGTCGGCATTGTCATCGGCATATGC
GCCTCCCTGCTGGTGGTCATCTATTTGGCCGCCAAACTCTTTCCGCGACG
TACCATGATGTATGGCGTCCTAATTGGCGGCTGGACCATTGGCTTCTATG
TGATCAAACAGCTGGCGGACAATCTGCGTTTGATTCTGATCACCTACCGC
GACCATGTGCTGGGCTATCTGGTGATCACCGGACTGATCTCGTTCCTGAT
CTGCTATCGCATTGGTCCGCCCAAGAATCCTCGATCGCAAACCATCGTCA
TGTGGGTGCTGCAGGCCATTGGCGCCGTTATGGCTTACTTCAGCAGCTGG
CACACCAGCGCCGTGATCTTCATCATGGTGCTGGTCTTTGTGGCCCACTA
CTTCCCCATTTCGTGGACGAACCAGATCAAGTTCATGTATCGCCGCCGTT
TTCCGCTAAAGAGGCGCATGCTCACCCAGGAGGAGTACGAACAGCAGACG
GCCGTGGAGACCTCGAAATCGCTGGCGGACCTGCGCAAGTACGTCAACAG
TCCGGAGTGCAAGCAGTGGGCGGTGATGGGCAAACTGCGTGATCCTTTGC
GCTTCGCCTCGTTCGCCAATGGAGCACCGCATCTGGACGACGAAGAGATC
GAGGACCACTCGCGCACCATCGAGGAGTCCATGGATGCGGCGCCCGAGGA
GGAATCAGTGGAGGAACCTGAGGAGGATAAACCAGCGGAGTTACTGCCGC
TGCCCAACTCGCAGTTCCGCTATCAACAGGCCGCCCGCAACTCGGAGCCG
GAGCCGGAGTCGGAGTCCGATGACAGCGAGGAGGAGGAGTTCTTCGAGCA
GGAGGTGGACCTTCGGCAAGTAGTACAATAACGGACGAACAGCTCAACCA
CAAGGGGAACCACTGATTAGGCTTAATTGAAACCATTGACCACCACGTTC
TATGCTGTACCGTTCTGTAAAATTTGTTTGTTTGGTTACCCTTTCTAATA
TTTGTATAATCACTTGCAGACTGAACGGAAACACACATATTAATACAAAT
TATATATTTAATTATTCATGACTGGCTAGGAATAAAAACACTTATACAAA
AAAAAAAAAAAAAAA

LD39612.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9723-RA 1945 CG9723-RA 120..1817 1..1698 8490 100 Plus
CG32573-RC 1332 CG32573-RC 1276..1332 1698..1642 285 100 Minus
CG32573-RA 1782 CG32573-RA 1726..1782 1698..1642 285 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16543827..16544674 848..1 4195 99.6 Minus
chrX 22417052 chrX 16542905..16543760 1697..848 4080 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16653219..16654069 1698..848 4255 100 Minus
X 23542271 X 16654136..16654983 848..1 4240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16661317..16662167 1698..848 4255 100 Minus
X 23527363 X 16662234..16663081 848..1 4240 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:31:39 has no hits.

LD39612.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:32:50 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16542905..16543759 849..1697 98 <- Minus
chrX 16543827..16544674 1..848 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:21:53 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 1..1365 117..1481 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:17 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 1..1365 117..1481 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:59 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 1..1365 117..1481 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:38 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 1..1365 117..1481 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:35:27 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 1..1365 117..1481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:55 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 30..1726 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:17 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 30..1726 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:59 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 33..1729 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:39 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 30..1726 1..1697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:35:27 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
CG9723-RA 33..1729 1..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:50 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
X 16653220..16654068 849..1697 100 <- Minus
X 16654136..16654983 1..848 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:50 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
X 16653220..16654068 849..1697 100 <- Minus
X 16654136..16654983 1..848 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:50 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
X 16653220..16654068 849..1697 100 <- Minus
X 16654136..16654983 1..848 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:59 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16547253..16548101 849..1697 100 <- Minus
arm_X 16548169..16549016 1..848 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:11 Download gff for LD39612.complete
Subject Subject Range Query Range Percent Splice Strand
X 16661318..16662166 849..1697 100 <- Minus
X 16662234..16663081 1..848 100   Minus

LD39612.pep Sequence

Translation from 116 to 1480

> LD39612.pep
MHSAGLLMLTVAGYFTSGIPGNTASSDVAYLTPGTYINLSENILGLQTLR
TFCYPGKRLTVSSLFETVEFVLAIGSDDYSQYGGKTPEEVLQHYKDKQSL
FSITLFAQKRQLLQLSPFEQQCIGISSRQAYTVILNSIPLDLWRLAQFAV
GILILFSARRLAKNSVFYYLVGIVIGICASLLVVIYLAAKLFPRRTMMYG
VLIGGWTIGFYVIKQLADNLRLILITYRDHVLGYLVITGLISFLICYRIG
PPKNPRSQTIVMWVLQAIGAVMAYFSSWHTSAVIFIMVLVFVAHYFPISW
TNQIKFMYRRRFPLKRRMLTQEEYEQQTAVETSKSLADLRKYVNSPECKQ
WAVMGKLRDPLRFASFANGAPHLDDEEIEDHSRTIEESMDAAPEEESVEE
PEEDKPAELLPLPNSQFRYQQAARNSEPEPESESDDSEEEEFFEQEVDLR
QVVQ*

LD39612.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22652-PA 463 GF22652-PA 23..438 23..420 1370 61.1 Plus
Dana\GF14306-PA 456 GF14306-PA 54..455 46..443 219 22.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18239-PA 457 GG18239-PA 1..443 1..429 1693 70.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24515-PA 468 GH24515-PA 9..398 5..399 1328 62.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9723-PA 454 CG9723-PA 1..454 1..454 2331 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14429-PA 458 GI14429-PA 25..398 26..399 1385 65.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13121-PA 463 GL13121-PA 29..435 26..434 1375 61.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23067-PA 437 GA23067-PA 2..437 26..446 1365 58.7 Plus
Dpse\GA23066-PA 423 GA23066-PA 2..395 26..421 1327 61.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13381-PA 468 GM13381-PA 1..443 1..423 1848 78.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15737-PA 468 GD15737-PA 1..443 1..423 1867 79.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18770-PA 472 GJ18770-PA 5..380 21..396 1377 64.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25696-PA 483 GK25696-PA 18..384 23..389 1370 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15955-PA 462 GE15955-PA 1..462 1..454 1755 70.9 Plus
Dyak\GE18981-PA 434 GE18981-PA 2..189 3..176 151 26.3 Plus

LD39612.hyp Sequence

Translation from 116 to 1480

> LD39612.hyp
MHSAGLLMLTVAGYFTSGIPGNTASSDVAYLTPGTYINLSENILGLQTLR
TFCYPGKRLTVSSLFETVEFVLAIGSDDYSQYGGKTPEEVLQHYKDKQSL
FSITLFAQKRQLLQLSPFEQQCIGISSRQAYTVILNSIPLDLWRLAQFAV
GILILFSARRLAKNSVFYYLVGIVIGICASLLVVIYLAAKLFPRRTMMYG
VLIGGWTIGFYVIKQLADNLRLILITYRDHVLGYLVITGLISFLICYRIG
PPKNPRSQTIVMWVLQAIGAVMAYFSSWHTSAVIFIMVLVFVAHYFPISW
TNQIKFMYRRRFPLKRRMLTQEEYEQQTAVETSKSLADLRKYVNSPECKQ
WAVMGKLRDPLRFASFANGAPHLDDEEIEDHSRTIEESMDAAPEEESVEE
PEEDKPAELLPLPNSQFRYQQAARNSEPEPESESDDSEEEEFFEQEVDLR
QVVQ*

LD39612.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9723-PA 454 CG9723-PA 1..454 1..454 2331 100 Plus