Clone LD39959 Report

Search the DGRC for LD39959

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:399
Well:59
Vector:pOT2
Associated Gene/TranscriptCG7979-RA
Protein status:LD39959.pep: gold
Preliminary Size:2097
Sequenced Size:2116

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7979 2001-01-01 Release 2 assignment
CG7979 2001-07-04 Blastp of sequenced clone
CG7979 2003-01-01 Sim4 clustering to Release 3
CG7979 2008-04-29 Release 5.5 accounting
CG7979 2008-08-15 Release 5.9 accounting
CG7979 2008-12-18 5.12 accounting

Clone Sequence Records

LD39959.complete Sequence

2116 bp (2116 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051913

> LD39959.complete
CTCCTGATAACGCAATTGTATTGTTTATATAGTTTCTAAAGCCGAACGAG
AATGCAATGTGGCGATATCAGTTGCTGATAAGCACTGGAACCCTGCAGTA
CACAACCCATAACCGACGATGACTGCCACCAAAAAGCGTCTGAAGATCGT
TGCAGCCATCTCGCTGCTCCTCCTGCTCCTGGTCTACCTTTACCGAATGG
CCAGCTTCTGCCCAAGCGGAAAGGTCGCCGTTTCCGTTCCCGGCGTCGAG
GAGGTTCAGGCCAAATGGCCGCCCACGGAAAGTCCGCTACAAAGGAGCCT
TCAGATGGCGTACGAGGAGCAGAGCTCTCTTATTCGAGAACAAAAGGCCG
AACTCCAGCGCACAAGGGAGAATTTGGCCAGATTGGAGGAACAAGTTCGT
AGCCTCCAGACCAGCACACCGCGCAAGTATCCGAAGGTTAAATACCTGAA
CTATAAGAATCGCAAACGCATACTAATTACCGGAGGAGCTGGCTTCGTGG
GCTCCCACTTGGTCGACGATCTGATGGTCCAGGGGCACGAGGTCATCGTG
GTGGACAATTTCTTTACGGGACGCAAGCGAAATGTCGAGCACTGGCTGGG
GCACGAGAACTTCGAGCTCATCCACCACGACATAGTGAATCCGCTTTTCA
TCGAGATCGATGAGATCTACCACTTGGCATCGCCAGCCTCGCCACCGCAT
TACATGTACAATCCGGTGAAGACCATCAAGACCAACACCATGGGCACGAT
CAATGTACTGGGTCTGGCCAAGCGCGTGATGGCCAAGGTTTTGATAGCTA
GCACTTCGGAAGTGTACGGCGATCCCACAGTGCATCCGCAGCCAGAAACA
TACTGGGGACATGTAAACCCTATTGGACCGAGAGCCTGTTATGACGAGGG
AAAGCGTGTCTCCGAGACGCTGAGCTATGCGTATGCCAAACAGGAGAAAG
TGCAAGTCCGAGTGGCGCGCATCTTTAACACTTATGGACCGAGAATGCAT
ATGAACGATGGACGAGTGGTGTCAAACTTTATACTTCAGGCGCTGAGGAA
TGAAACCATTACGGTGTATGGAAATGGCAAACAAACGCGCTCCTTTCAGT
ATGTTTCGGATCTGGTGGACGGAATGATAGCCCTAATGGCATCCAACTAC
ACACAGCCGGTGAATTTAGGCAATCCTGTGGAGCAGACAATCGGCGAATT
TGCCGAGATCATCAAGAAACTGGTCGGCGGGCCCAGTGTGATAAAGCAAT
CGAAGGCCATGGAAGATGATCCGCAGCGCAGAAAACCGGACATAACTCGA
GCCCGCCAGTTGCTCCATTGGGAGCCAAAGGTTCCCCTAGAGACTGGACT
TCAGCGGACCATCTCCTACTTCCGCAACGAATTGGCGCGTAGCGATCGCT
TTCAGGAAAGCTCCAACAAGTACTTTGATACACATACACCGTAGAATTAA
TTGGGCTTAGCTCTAATTGGTGATGATGGAACGTCTCTAGTCTGCAAATG
TAAATATGACCATCGTTAGCACTAATTGTAAGCCCTCAAGGACCACAGAA
TACCTTTGTCATGGTTAATTTTTTGAAGTTTTGCGATATATCAGCCTATG
TATGGATTAGGAAATAGTGATGTATAAATGCGATCAAATGCACTGAATTC
TAGAAAACTAATTTGAATTTGTTTAGGAAAAGAAAATCCCCAAAGAATAC
AGAACTTAGGGAGTATGGAAACAACAGTTACAAACGGTTTATTATTCACG
GACGACATTGCTATTCTTTTGACCGCATGTGTACCACATAGACACAGAAT
CACTGGGTTACATGACACTTAGAAACAGTATAATCCATTGTATTGTAGAA
CCACTATCGTATTTTAAAAGTGCCCACAAATTCATACGTTACATCAGAAG
GTTGCGGCATATACATATATCAGAACCAGTGAGAATTGAACAAATTATTG
AAGATCTGTGACTCACAACTTTAGACACATAACACCTATATGCGCCTTTA
ACCAGTGTAAGCACACCCCGATTCTAGAAGATAAGTAGGGTTTTCCAGTT
GCTGTAGTTGGTAGTCCATTAAAAGAGATTTTTTCTGCGAACTAAAAAAA
AAAAAAAAAAAAAAAA

LD39959.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7979-RA 2161 CG7979-RA 69..2161 1..2093 10465 100 Plus
CG7979.a 1556 CG7979.a 69..1487 1..1419 7095 100 Plus
ERR-RB 2022 ERR-RB 1719..2022 2095..1792 1520 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8174185..8175338 940..2093 5770 100 Plus
chr3L 24539361 chr3L 8172892..8173654 1..763 3815 100 Plus
chr3L 24539361 chr3L 8173719..8173902 761..944 920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8182216..8183371 940..2095 5780 100 Plus
3L 28110227 3L 8180923..8181685 1..763 3815 100 Plus
3L 28110227 3L 8181750..8181933 761..944 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8175316..8176471 940..2095 5780 100 Plus
3L 28103327 3L 8174023..8174785 1..763 3815 100 Plus
3L 28103327 3L 8174850..8175033 761..944 920 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:06:03 has no hits.

LD39959.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:02 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8172892..8173652 1..761 100 -> Plus
chr3L 8173720..8173901 762..943 100 -> Plus
chr3L 8174189..8175338 944..2093 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:13 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..1326 119..1444 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:14:35 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..1326 119..1444 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:26 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..1326 119..1444 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:45:55 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..1326 119..1444 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:59 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..1326 119..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:07:49 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..2093 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:14:35 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..2093 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:26 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..2093 1..2093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:45:56 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..2093 1..2093 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:59 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7979-RA 1..2093 1..2093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:02 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8180923..8181683 1..761 100 -> Plus
3L 8181751..8181932 762..943 100 -> Plus
3L 8182220..8183369 944..2093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:02 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8180923..8181683 1..761 100 -> Plus
3L 8181751..8181932 762..943 100 -> Plus
3L 8182220..8183369 944..2093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:02 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8180923..8181683 1..761 100 -> Plus
3L 8181751..8181932 762..943 100 -> Plus
3L 8182220..8183369 944..2093 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:26 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8174023..8174783 1..761 100 -> Plus
arm_3L 8174851..8175032 762..943 100 -> Plus
arm_3L 8175320..8176469 944..2093 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:23:46 Download gff for LD39959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8174023..8174783 1..761 100 -> Plus
3L 8174851..8175032 762..943 100 -> Plus
3L 8175320..8176469 944..2093 100   Plus

LD39959.hyp Sequence

Translation from 118 to 1443

> LD39959.hyp
MTATKKRLKIVAAISLLLLLLVYLYRMASFCPSGKVAVSVPGVEEVQAKW
PPTESPLQRSLQMAYEEQSSLIREQKAELQRTRENLARLEEQVRSLQTST
PRKYPKVKYLNYKNRKRILITGGAGFVGSHLVDDLMVQGHEVIVVDNFFT
GRKRNVEHWLGHENFELIHHDIVNPLFIEIDEIYHLASPASPPHYMYNPV
KTIKTNTMGTINVLGLAKRVMAKVLIASTSEVYGDPTVHPQPETYWGHVN
PIGPRACYDEGKRVSETLSYAYAKQEKVQVRVARIFNTYGPRMHMNDGRV
VSNFILQALRNETITVYGNGKQTRSFQYVSDLVDGMIALMASNYTQPVNL
GNPVEQTIGEFAEIIKKLVGGPSVIKQSKAMEDDPQRRKPDITRARQLLH
WEPKVPLETGLQRTISYFRNELARSDRFQESSNKYFDTHTP*

LD39959.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7979-PA 441 CG7979-PA 1..441 1..441 2288 100 Plus

LD39959.pep Sequence

Translation from 118 to 1443

> LD39959.pep
MTATKKRLKIVAAISLLLLLLVYLYRMASFCPSGKVAVSVPGVEEVQAKW
PPTESPLQRSLQMAYEEQSSLIREQKAELQRTRENLARLEEQVRSLQTST
PRKYPKVKYLNYKNRKRILITGGAGFVGSHLVDDLMVQGHEVIVVDNFFT
GRKRNVEHWLGHENFELIHHDIVNPLFIEIDEIYHLASPASPPHYMYNPV
KTIKTNTMGTINVLGLAKRVMAKVLIASTSEVYGDPTVHPQPETYWGHVN
PIGPRACYDEGKRVSETLSYAYAKQEKVQVRVARIFNTYGPRMHMNDGRV
VSNFILQALRNETITVYGNGKQTRSFQYVSDLVDGMIALMASNYTQPVNL
GNPVEQTIGEFAEIIKKLVGGPSVIKQSKAMEDDPQRRKPDITRARQLLH
WEPKVPLETGLQRTISYFRNELARSDRFQESSNKYFDTHTP*

LD39959.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25098-PA 436 GF25098-PA 1..435 1..438 2062 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14475-PA 441 GG14475-PA 1..441 1..441 2207 95.9 Plus
Dere\GG14731-PA 350 GG14731-PA 6..336 118..414 155 25 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15492-PA 445 GH15492-PA 1..437 1..438 1956 82.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Uxs-PA 441 CG7979-PA 1..441 1..441 2288 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16768-PA 447 GI16768-PA 1..439 1..438 2010 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22533-PA 454 GL22533-PA 2..446 1..438 2064 87 Plus
Dper\GL20702-PA 688 GL20702-PA 344..662 118..402 152 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20738-PA 454 GA20738-PA 2..446 1..438 2061 86.7 Plus
Dpse\GA11351-PA 558 GA11351-PA 214..532 118..402 153 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25024-PA 441 GM25024-PA 1..441 1..441 2323 98 Plus
Dsec\GM14349-PA 350 GM14349-PA 6..336 118..414 152 24.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14057-PA 441 GD14057-PA 1..441 1..441 2342 98.6 Plus
Dsim\GD13563-PA 350 GD13563-PA 6..336 118..414 155 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12512-PA 447 GJ12512-PA 1..439 1..438 1994 84.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11988-PA 447 GK11988-PA 1..439 1..438 1973 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21662-PA 441 GE21662-PA 1..441 1..441 2293 96.8 Plus
Dyak\GE21095-PA 350 GE21095-PA 6..336 118..414 155 25 Plus