Clone LD39967 Report

Search the DGRC for LD39967

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:399
Well:67
Vector:pOT2
Associated Gene/TranscriptCG8602-RA
Protein status:LD39967.pep: gold
Preliminary Size:2451
Sequenced Size:2353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8602 2001-01-01 Release 2 assignment
CG8602 2001-11-29 Blastp of sequenced clone
CG8602 2003-01-01 Sim4 clustering to Release 3
CG8602 2008-04-29 Release 5.5 accounting
CG8602 2008-08-15 Release 5.9 accounting
CG8602 2008-12-18 5.12 accounting

Clone Sequence Records

LD39967.complete Sequence

2353 bp (2353 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069628

> LD39967.complete
CGACAACCCTGCTCTACAGCGAGTTGGCAGCCCCGCCATTGTATATGCGT
AATTAACGTTAATTAGGCAGAGGAAAGAATTTAGTTTTATTCGATCAGCA
ATAAAGTGCGGTTGCACACGTCACCGAACATTTGTTGCCCAACACCGCAC
TGCGAACTTCAGCTGCAAGTGGAGTGGAAAAACTGCTGATAACCAGTGAA
CCCAGAGACAACTAACTAGCCCACACAGCCAACAACAACAATAGTTGTTA
GACAAAGGGTACTAGTACAGTAAACAAAAACAAAAGCAGCGAGATAAGCC
AAGACAAAGCAGAAGAGTTCAACTCGCTCACTCGTTCGCAGAAATTGATA
CAAATATTTTGCAGAAACGGCAAATACGAAAAGAGAAAAACGAAAGCAAA
AGAAAAAACAACTGCGGCAGGAAATCAGAAAGCCGATTAATCATATCACA
TAGTTTTGCATACGCCCATTCTGCGGGATTCGGCTCCACATCCAACTGGT
CAGTGCGGATTGTGCCAGCGGTGAGTGGAGATGGCGCGCGAGGACGAGGA
ACGCATCGTGGACAATGAGGAGGTGTCGCGACCGACGGAGGAGGACCAAG
TGGTCAGTCGGGCCGGTCGGCGTGACAATGAACTGAGCCTTCCGTCCGGC
GGCTGCTGCATGCCCTCGAGCACGAGCCACCGCTTCATGGCTCTGGTGTT
CATGTGCCTGCTGGGATTCGGCTCCTATTTCTGTTACGATGCACCCGGCG
CCCTGCAGAACTATTTCAAGAAAGATCTTAATCTGACCTCCGCCCAGTTC
ACACTCATCTACTCGATTTACTCGTGGCCCAATGTCGTCCTGTGCTTCGT
GGGAGGTTTCCTGATCGATCGACTGTTTGGCATTCGACTGGGCACGATTA
TCTACATGATGATCCTGCTGGTGGGTCAGTTGATCTTTGCCTGCGGCGGC
ATTCTGGACGCCTTCTGGATGATGATCCTGGGACGGTTTATCTTCGGCAT
TGGCGCCGAATCACTGGCGGTGGCCCAGAACAGCTATGCGGTGCTCTGGT
TTAAGGGCAAGGAACTGAACATGGTATTCGGCCTGCAGCTGTCGGTTGCC
CGATTCGGCAGCACCGTCAACTTCTGGGTGATGCAGCCCATCTATGAGTA
TGTGAGCAATTTTTACAAGGGACATACCGCTCTAGGCGTCGTCTTATTGC
TGGCTACCCTCACCTGTGTGATGTCGATGACCTGTGCCCTCATCCTCGGC
TGGATGGACAAGAGGGCCGAGCGGATTTTGCAGCGTAACAACAACCCGGC
TGGACAGATACCGAAACTCACCGATGTCTTTTCGTTCAAACCACCCTTTT
GGATGGTATCCATCATTTGCGTCGCCTACTATGTGGCCATCTTCCCATTC
ATTGCCCTCGGACAGAATTTCTTTGTTGATCGCTTCGGGCTTTCGCCTGC
TGAGGCCAACACCGTGGACTCGCTGGTGTATCTAATTGCAGCCGTATCGT
CTCCGGTCTTTGGTTTCATCATCGACAAACTGGGTAGGAATGTGACCTGG
GTGTTCACAGCGACACTGACCACCATTGGAGCCCATGCCCTGCTTACGTT
CACCCAGCTGACACCCTATGTGGGCATGATCATCATGGGACTGTCGTATT
CCATGCTGGCCGCAAGCCTGTGGCCTCTGGTGGCTCTCATCATTCCGGAA
TACCAATTGGGCACGGCCTACGGCTTCTGCCAATCGATACAGAATCTTGG
CTTGGCGGTCATCACTATCGTGGCTGGAATTATCGTGGATCACAGCGGCG
GCGAGCACATGTGGCTGCAGTTGTTCTTCATGGGCTGGCTGACCATTGCC
CTGATCTCCACCGGCGTCATCTGGGCCTACAACAACAAGAACCGCGGTAA
TCTCAACATGACACCCCAGCAACGGGCACAGTTCGTCAGCGCCGAGAATT
ATCAGAACTTTGAATAGAAAGGGGGGGATACAAAGGCGAACGGCGCCCGC
AGATCGGATTATTATCGGTTATTTAGTGTAGACATAAAAGTTACTCTCTG
CGGGCAATGCGCCTTGGTCCGTTCCACGATGTGATGATGATGTGTGATGT
GCGTCTCGAGTCGCAAATTGGTATTTACTAACTGCAATTGTTTGTCATCC
GACGATAGGGATATACAATACGCCCTGATCAGCCATGAATCAGTATTGAT
ATGCGATTCGAGCCCGATCAGGCCGGTTTATATGCTATTTTACGCTATGT
ATTTTTAGATCAATTTATTATTAAAGTTAAAGTTACCGCATGTTTTTGTG
TCAACGTTTTACAAATTAAACCAAACATTGAGACTAAAAAAAAAAAAAAA
AAA

LD39967.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8602-RA 2586 CG8602-RA 1..2334 1..2334 11655 99.9 Plus
CG12194-RB 1847 CG12194-RB 239..707 667..1135 905 79.5 Plus
CG12194.a 2202 CG12194.a 594..1062 667..1135 905 79.5 Plus
CG12194-RB 1847 CG12194-RB 1198..1253 1626..1681 160 85.7 Plus
CG12194.a 2202 CG12194.a 1553..1608 1626..1681 160 85.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7318687..7321020 2334..1 11280 98.9 Minus
chr2L 23010047 chr2L 4838699..4839111 723..1135 835 80.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7326525..7328858 2334..1 11655 100 Minus
2L 23513712 2L 4839579..4839991 723..1135 850 80.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7319625..7321958 2334..1 11655 99.9 Minus
2L 23513712 2L 4839579..4839991 723..1135 850 80.3 Plus
2L 23513712 2L 4840541..4840596 1626..1681 160 85.7 Plus
Blast to na_te.dros performed on 2019-03-16 19:59:38 has no hits.

LD39967.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:00:26 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7318686..7321020 1..2335 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:15 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..1437 531..1967 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:18 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..1437 531..1967 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:35 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..1437 531..1967 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:40 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..1437 531..1967 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:05 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..1437 531..1967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:57 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..2334 1..2335 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:18 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..2334 1..2335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:35 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..2318 17..2335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:40 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..2334 1..2335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:05 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
CG8602-RA 1..2318 17..2335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:26 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7326524..7328858 1..2335 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:26 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7326524..7328858 1..2335 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:26 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7326524..7328858 1..2335 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:35 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7319624..7321958 1..2335 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:12 Download gff for LD39967.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7319624..7321958 1..2335 99   Minus

LD39967.pep Sequence

Translation from 530 to 1966

> LD39967.pep
MAREDEERIVDNEEVSRPTEEDQVVSRAGRRDNELSLPSGGCCMPSSTSH
RFMALVFMCLLGFGSYFCYDAPGALQNYFKKDLNLTSAQFTLIYSIYSWP
NVVLCFVGGFLIDRLFGIRLGTIIYMMILLVGQLIFACGGILDAFWMMIL
GRFIFGIGAESLAVAQNSYAVLWFKGKELNMVFGLQLSVARFGSTVNFWV
MQPIYEYVSNFYKGHTALGVVLLLATLTCVMSMTCALILGWMDKRAERIL
QRNNNPAGQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFIALGQNFFVD
RFGLSPAEANTVDSLVYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIG
AHALLTFTQLTPYVGMIIMGLSYSMLAASLWPLVALIIPEYQLGTAYGFC
QSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFFMGWLTIALISTGVIWAY
NNKNRGNLNMTPQQRAQFVSAENYQNFE*

LD39967.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23860-PA 478 GF23860-PA 1..478 1..478 2235 87.2 Plus
Dana\GF15492-PA 485 GF15492-PA 1..483 1..478 1853 70.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14980-PA 478 GG14980-PA 1..478 1..478 2451 96 Plus
Dere\GG25021-PA 485 GG25021-PA 1..474 1..468 1816 70.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15505-PA 476 GH15505-PA 1..476 1..478 2074 81.6 Plus
Dgri\GH13224-PA 484 GH13224-PA 1..481 1..478 1750 69.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8602-PB 478 CG8602-PB 1..478 1..478 2498 100 Plus
CG8602-PA 478 CG8602-PA 1..478 1..478 2498 100 Plus
CG12194-PC 485 CG12194-PC 1..483 1..478 1821 70 Plus
CG12194-PA 485 CG12194-PA 1..483 1..478 1821 70 Plus
CG12194-PB 496 CG12194-PB 1..474 1..468 1820 70.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16781-PA 476 GI16781-PA 1..476 1..478 2118 82.2 Plus
Dmoj\GI18103-PA 480 GI18103-PA 1..478 1..478 1864 71.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21156-PA 455 GL21156-PA 1..455 1..478 2057 80.6 Plus
Dper\GL19373-PA 483 GL19373-PA 1..481 1..478 1828 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21198-PA 480 GA21198-PA 1..480 1..478 2238 86.2 Plus
Dpse\GA11470-PA 483 GA11470-PA 1..481 1..478 1828 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13776-PA 478 GM13776-PA 1..478 1..478 2490 98.1 Plus
Dsec\GM18494-PA 485 GM18494-PA 1..483 1..478 1828 69.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13074-PA 451 GD13074-PA 1..451 1..478 2268 90.6 Plus
Dsim\GD23302-PA 485 GD23302-PA 1..483 1..478 1828 69.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12524-PA 478 GJ12524-PA 1..478 1..478 2192 84.7 Plus
Dvir\GJ16290-PA 480 GJ16290-PA 1..478 1..478 1804 70.6 Plus
Dvir\GJ17716-PA 96 GJ17716-PA 23..80 104..172 165 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24465-PA 495 GK24465-PA 1..483 1..476 1790 70.8 Plus
Dwil\GK17524-PA 355 GK17524-PA 1..355 126..478 1624 84.5 Plus
Dwil\GK17522-PA 111 GK17522-PA 1..106 1..106 377 68.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20427-PA 480 GE20427-PA 1..480 1..478 2424 94.8 Plus
Dyak\GE18310-PA 485 GE18310-PA 1..483 1..478 1831 70.2 Plus

LD39967.hyp Sequence

Translation from 530 to 1966

> LD39967.hyp
MAREDEERIVDNEEVSRPTEEDQVVSRAGRRDNELSLPSGGCCMPSSTSH
RFMALVFMCLLGFGSYFCYDAPGALQNYFKKDLNLTSAQFTLIYSIYSWP
NVVLCFVGGFLIDRLFGIRLGTIIYMMILLVGQLIFACGGILDAFWMMIL
GRFIFGIGAESLAVAQNSYAVLWFKGKELNMVFGLQLSVARFGSTVNFWV
MQPIYEYVSNFYKGHTALGVVLLLATLTCVMSMTCALILGWMDKRAERIL
QRNNNPAGQIPKLTDVFSFKPPFWMVSIICVAYYVAIFPFIALGQNFFVD
RFGLSPAEANTVDSLVYLIAAVSSPVFGFIIDKLGRNVTWVFTATLTTIG
AHALLTFTQLTPYVGMIIMGLSYSMLAASLWPLVALIIPEYQLGTAYGFC
QSIQNLGLAVITIVAGIIVDHSGGEHMWLQLFFMGWLTIALISTGVIWAY
NNKNRGNLNMTPQQRAQFVSAENYQNFE*

LD39967.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8602-PB 478 CG8602-PB 1..478 1..478 2498 100 Plus
CG8602-PA 478 CG8602-PA 1..478 1..478 2498 100 Plus
CG12194-PC 485 CG12194-PC 1..483 1..478 1821 70 Plus
CG12194-PA 485 CG12194-PA 1..483 1..478 1821 70 Plus
CG12194-PB 496 CG12194-PB 1..474 1..468 1820 70.9 Plus