Clone LD39986 Report

Search the DGRC for LD39986

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:399
Well:86
Vector:pOT2
Associated Gene/TranscriptRab10-RA
Protein status:LD39986.pep: gold
Preliminary Size:2037
Sequenced Size:2349

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17060 2001-01-01 Release 2 assignment
CG17060 2001-09-19 Blastp of sequenced clone
CG17060 2003-01-01 Sim4 clustering to Release 3
Rab10 2008-04-29 Release 5.5 accounting
Rab10 2008-08-15 Release 5.9 accounting
Rab10 2008-12-18 5.12 accounting

Clone Sequence Records

LD39986.complete Sequence

2349 bp (2349 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060425

> LD39986.complete
AACAATTTCAAGCGAAAATATTAATTAATTCGGCGCATTTAAGACACGCG
GAGAAAAAAGAGCTAGCTCGAGATACAGGATCATTGCTTAGGCGGCCATA
ACCGAGAGAAAGAGCGAAAAAGGGCAGGCGCTTCAATAATAATAATATCT
CTTGTCACCTGCGCCCGTGCGTTTGTGTGTGTGTGTGTTTGCGTGCGTGT
GAGTGTCGCGTGTGTTTGTGCTTTGTTCTGCGAGCGTTCCGTTGCGTTTT
GGAAATGGCAAAGAAAACCTACGATTTGCTCTTTAAACTGTTGCTGATCG
GTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGGTTCTCGGATGAT
GCATTCACGTCCACGTTCATATCGACCATAGGCATCGATTTCAAAATCAA
AACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAATATGGGACACCG
CCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTACTATCGAGGCGCC
ATGGGCATAATGCTGGTCTATGACATAACGAACGAGAAGAGTTTCGAGAA
CATAGTCAAATGGTTACGGAATATAGACGAGCACGCCAACGAGGATGTGG
AGAAGATGATCCTCGGCAACAAGTGCGATATGACGGACAAGAGGGTGGTC
AACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGGCATTCGGTTTAT
GGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGGCCTTCTGCGAGC
TGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAGTCGGCGGAGAAT
CAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAAGGCGCCGGGCTA
CAGCAAGTGCTGCGCGTAAAAAGCGGCGTTCTAGGCGAACGGGGCGTGGT
TTGGCCCGGTTTGTGCTCAGCTGTGCGTGGGGAAGGCGGCGAAGTACGGA
TTGGATTGGATTAAACTGGACTAGATTGAATTGGAATGGAACGAAACGAA
TCGAATCGAACCGAAAGCAGTGGGGACCGGTTTCTGAAACCGCTCCGCAC
GGACGAAGCAAAAAACAAAGCAATAGAGCCGGGGTCATTCGCACGTAGGA
AACTTACTTATTACGAGGATACGCAAAATGGAACAAGCAACAGAAACAAC
CTACCTAAAGTTTAACAACAAGCAACAGATATTGTAATACGAACATTTGG
AAGCAACTTTACAAAACTCCGAACGATGGATGGTGGTCGGGCATGGGCCA
CGTTAGTTAACGCCCACACAACGTGGACGCAAGGATCTGCATATCCATGC
CGCACTCGATCGGTTGACTAACGTGGATCGGATAACGAGGATCAGCTCCA
GCCACTGTCCAGCCACAAGAAACGATAATGATAGCGCTGATGTCGCTGAC
GCAGACATAAGCAACTTTTGTAACGTACTTTTGATACACATATAGTCTTA
CGATTCCTGTACTCAGTCATTCGATCGCTCGCTCGCTCGCTCGTTCGCCA
CCACTCGCACTCCCCAGCCGCCCCACTTAGTGTTTCGTTTTTGTTTTGCG
TTTCAGCCTAGATATAAATAACACCTATACATATTATACATCGGATAGTA
GTATATAGCCTATACCTACTTAGCTTGCTTTCGCTTTCTATGTCGACGCC
AAGCCAAGCCAGCGAGGAGTTCGATGGGGCGGGTGGTGATGTACGCCCTG
CTCTGCGTCCTGGCCACTCAAGCTTTCAAGCCAGATCCTCGGCCAGAGTT
GCAGTTCCATAGGGAGTTTCGAGATCGAGGTGTTCCGAAATCGTTTTTGA
TTATTGCCTGTGCATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATAGATATTTAGATATAAATATATATTTATA
TATATATATACATATATGAAATTACACACCGTATATCGCATCGTTTTTAT
GTGCATTCGCGCCCGCACACCCAATTTATATATAATATATATGTATGTAT
CTGTGTACACTTAAGGGGGCTTGGGTGTGCGCGCGTATATATCTCCATGC
TTGTATGTAAGGACGGTGCACGCCATCAATGTAGCATTCGCATTTGCATT
CGCATCCGCAAGGGAGGAGCGCCCCAAACCGAACGCACCACCTAGCGCTC
GCCTCCCGTCTCCTTGTAATTTTATTCTACTCTTTTTTTTTTGTCGTGTA
AACCTATTATTTGTAACTGTATATGGATTTAGTTTAGTTGTCCACACCAA
ATGATTTACCGATTAAAATATAAAGAACAACCTAAACCATGTCATATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD39986.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2392 Rab10-RA 38..1906 1..1869 9255 99.6 Plus
Rab10-RA 2392 Rab10-RA 1851..2289 1862..2300 2195 100 Plus
Rab8.c 1727 Rab8.c 715..849 419..553 315 82.2 Plus
Rab8.a 2180 Rab8.a 646..780 419..553 315 82.2 Plus
Rab8.c 1727 Rab8.c 560..700 264..404 270 79.4 Plus
Rab8.a 2180 Rab8.a 491..631 264..404 270 79.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20118638..20119836 671..1869 5890 99.4 Plus
chrX 22417052 chrX 20119781..20120216 1862..2297 2165 99.8 Plus
chrX 22417052 chrX 20116950..20117331 1..382 1910 100 Plus
chrX 22417052 chrX 20117809..20118010 380..581 1010 100 Plus
chrX 22417052 chrX 20118079..20118170 580..671 460 100 Plus
chr3L 24539361 chr3L 19858455..19858654 641..442 250 75 Minus
chr3L 24539361 chr3L 19859723..19859841 382..264 220 79 Minus
chr2L 23010047 chr2L 7030945..7030996 468..417 215 94.2 Minus
chr3R 27901430 chr3R 20650736..20650815 508..429 205 83.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20253065..20254694 671..2300 8150 100 Plus
X 23542271 X 20251377..20251758 1..382 1910 100 Plus
X 23542271 X 20252236..20252437 380..581 1010 100 Plus
X 23542271 X 20252506..20252597 580..671 460 100 Plus
3L 28110227 3L 19869109..19869308 641..442 250 75 Minus
3L 28110227 3L 19870380..19870498 382..264 220 79 Minus
2L 23513712 2L 7031898..7031949 468..417 215 94.2 Minus
3R 32079331 3R 24827498..24827577 508..429 205 83.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20238204..20239402 671..1869 5905 99.4 Plus
X 23527363 X 20239347..20239785 1862..2300 2195 100 Plus
X 23527363 X 20236516..20236897 1..382 1910 100 Plus
X 23527363 X 20237375..20237576 380..581 1010 100 Plus
X 23527363 X 20237645..20237736 580..671 460 100 Plus
3L 28103327 3L 19862297..19862408 553..442 230 80.3 Minus
3L 28103327 3L 19863480..19863598 382..264 220 78.9 Minus
2L 23513712 2L 7031898..7031949 468..417 215 94.2 Minus
3R 31820162 3R 24568329..24568408 508..429 205 83.7 Minus
Blast to na_te.dros performed on 2019-03-16 20:39:44 has no hits.

LD39986.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:37 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20116950..20117115 1..166 100 == Plus
chrX 20117170..20117330 221..381 100 -> Plus
chrX 20117811..20118010 382..581 100 -> Plus
chrX 20118081..20118170 582..671 100 -> Plus
chrX 20118639..20119780 672..1813 93 == Plus
chrX 20119837..20120216 1918..2297 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:16 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 255..869 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:47 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 255..869 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:48 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 255..869 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:11 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 255..869 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:38 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 255..869 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:46:59 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..1869 1..1869 99 == Plus
Rab10-RA 1870..2249 1918..2297 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:46 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..1869 1..1869 99 == Plus
Rab10-RA 1870..2249 1918..2297 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:48 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 40..1908 1..1869 99 == Plus
Rab10-RA 1909..2288 1918..2297 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:11 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..1869 1..1869 99 == Plus
Rab10-RA 1870..2249 1918..2297 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:38 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 40..2336 1..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:37 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
X 20251377..20251757 1..381 100 -> Plus
X 20252238..20252437 382..581 100 -> Plus
X 20252508..20252597 582..671 100 -> Plus
X 20253066..20254691 672..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:37 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
X 20251377..20251757 1..381 100 -> Plus
X 20252238..20252437 382..581 100 -> Plus
X 20252508..20252597 582..671 100 -> Plus
X 20253066..20254691 672..2297 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:37 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
X 20251377..20251757 1..381 100 -> Plus
X 20252238..20252437 382..581 100 -> Plus
X 20252508..20252597 582..671 100 -> Plus
X 20253066..20254691 672..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:48 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20123312..20123511 382..581 100 -> Plus
arm_X 20123582..20123671 582..671 100 -> Plus
arm_X 20122451..20122831 1..381 100 -> Plus
arm_X 20124140..20125337 672..1869 99 == Plus
arm_X 20125338..20125717 1918..2297 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:33 Download gff for LD39986.complete
Subject Subject Range Query Range Percent Splice Strand
X 20236516..20236896 1..381 100 -> Plus
X 20237377..20237576 382..581 100 -> Plus
X 20237647..20237736 582..671 100 -> Plus
X 20238205..20239402 672..1869 99 == Plus
X 20239403..20239782 1918..2297 100   Plus

LD39986.pep Sequence

Translation from 254 to 868

> LD39986.pep
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCA*

LD39986.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20241-PA 204 GF20241-PA 1..204 1..204 1048 96.6 Plus
Dana\GF10843-PA 207 GF10843-PA 3..184 4..185 717 74.7 Plus
Dana\GF17263-PA 205 GF17263-PA 8..205 6..203 571 55.5 Plus
Dana\GF11093-PA 220 GF11093-PA 14..187 2..175 539 54 Plus
Dana\GF18770-PA 213 GF18770-PA 9..193 10..198 513 53.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19277-PA 204 GG19277-PA 1..204 1..204 1079 100 Plus
Dere\GG13365-PA 207 GG13365-PA 3..184 4..185 717 74.7 Plus
Dere\GG14761-PA 205 GG14761-PA 8..205 6..203 572 55.5 Plus
Dere\GG22724-PA 220 GG22724-PA 14..187 2..175 538 54 Plus
Dere\GG12316-PA 213 GG12316-PA 9..193 10..198 511 53.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12621-PA 204 GH12621-PA 1..204 1..204 1040 96.1 Plus
Dgri\GH16908-PA 207 GH16908-PA 3..184 4..185 711 74.2 Plus
Dgri\GH18937-PA 205 GH18937-PA 8..205 6..203 568 54.8 Plus
Dgri\GH24197-PA 220 GH24197-PA 14..187 2..175 537 54 Plus
Dgri\GH20855-PA 213 GH20855-PA 9..193 10..198 514 53.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-PA 204 CG17060-PA 1..204 1..204 1052 100 Plus
Rab8-PC 207 CG8287-PC 3..181 4..182 706 76 Plus
Rab8-PA 207 CG8287-PA 3..181 4..182 706 76 Plus
Rab1-PA 205 CG3320-PA 8..193 6..190 551 57 Plus
Rab3-PB 220 CG7576-PB 14..187 2..175 531 54 Plus
Rab3-PA 220 CG7576-PA 14..187 2..175 531 54 Plus
Rab8-PB 172 CG8287-PB 7..146 43..182 526 72.1 Plus
RabX4-PA 213 CG31118-PA 9..193 10..198 508 53.4 Plus
Rab35-PB 201 CG9575-PB 5..200 6..203 498 48 Plus
Rab35-PD 201 CG9575-PD 5..200 6..203 498 48 Plus
Rab35-PA 201 CG9575-PA 5..200 6..203 498 48 Plus
Rab2-PB 213 CG3269-PB 2..170 5..173 467 50.3 Plus
Rab2-PA 213 CG3269-PA 2..170 5..173 467 50.3 Plus
Rab9Fb-PA 214 CG32670-PA 4..214 6..203 459 43.6 Plus
Rab30-PD 223 CG9100-PD 4..209 6..203 449 43.5 Plus
Rab30-PC 223 CG9100-PC 4..209 6..203 449 43.5 Plus
Rab30-PB 223 CG9100-PB 4..209 6..203 449 43.5 Plus
Rab30-PA 223 CG9100-PA 4..209 6..203 449 43.5 Plus
Rab35-PC 190 CG9575-PC 8..189 20..203 441 45.7 Plus
Rab26-PE 410 CG34410-PE 209..385 6..182 439 46.9 Plus
Rab26-PD 410 CG34410-PD 209..385 6..182 439 46.9 Plus
Rab26-PC 410 CG34410-PC 209..385 6..182 439 46.9 Plus
Rab11-PA 214 CG5771-PA 8..196 6..194 423 43.4 Plus
Rab11-PB 214 CG5771-PB 8..196 6..194 423 43.4 Plus
Rab19-PB 219 CG7062-PP3-RB 18..201 6..187 417 45.1 Plus
Rab19-PA 219 CG7062-PA 18..201 6..187 417 45.1 Plus
Rab6-PB 208 CG6601-PB 13..208 10..203 414 42.3 Plus
Rab6-PA 208 CG6601-PA 13..208 10..203 414 42.3 Plus
Rab27-PC 230 CG14791-PC 8..180 6..173 407 45.1 Plus
RabX2-PA 195 CG2885-PA 4..165 6..167 395 46.9 Plus
Rab26-PG 388 CG34410-PG 192..363 11..182 392 44.8 Plus
Rab26-PB 388 CG34410-PB 192..363 11..182 392 44.8 Plus
Rab4-PA 213 CG4921-PA 3..172 4..173 389 44.1 Plus
Rab4-PB 213 CG4921-PB 3..172 4..173 389 44.1 Plus
Rab14-PD 215 CG4212-PD 4..172 2..170 389 43.2 Plus
Rab14-PA 215 CG4212-PA 4..172 2..170 389 43.2 Plus
Rab14-PB 239 CG4212-PB 28..196 2..170 389 43.2 Plus
Rab27-PB 236 CG14791-PB 19..186 11..173 387 44 Plus
Rab40-PC 255 CG1900-PC 6..185 4..187 370 44.6 Plus
Rab40-PA 255 CG1900-PA 6..185 4..187 370 44.6 Plus
Rab39-PB 218 CG12156-PB 1..188 1..182 359 40.4 Plus
Rab39-PA 218 CG12156-PA 1..188 1..182 359 40.4 Plus
Rab40-PB 265 CG1900-PB 6..195 4..187 358 42.2 Plus
Rab5-PI 219 CG3664-PI 30..218 10..203 344 37.1 Plus
Rab5-PH 219 CG3664-PH 30..218 10..203 344 37.1 Plus
Rab5-PG 219 CG3664-PG 30..218 10..203 344 37.1 Plus
Rab5-PE 219 CG3664-PE 30..218 10..203 344 37.1 Plus
Rab5-PC 219 CG3664-PC 30..218 10..203 344 37.1 Plus
Rab5-PD 219 CG3664-PD 30..218 10..203 344 37.1 Plus
Rab5-PF 219 CG3664-PF 30..218 10..203 344 37.1 Plus
Rab5-PB 219 CG3664-PB 30..218 10..203 344 37.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11034-PA 204 GI11034-PA 1..204 1..204 1025 95.1 Plus
Dmoj\GI13664-PA 207 GI13664-PA 3..184 4..185 710 74.2 Plus
Dmoj\GI10837-PA 205 GI10837-PA 8..205 6..203 572 55.5 Plus
Dmoj\GI20173-PA 220 GI20173-PA 14..187 2..175 537 54 Plus
Dmoj\GI14806-PA 201 GI14806-PA 3..201 4..204 519 49.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13084-PA 170 GL13084-PA 1..170 1..204 827 79.9 Plus
Dper\GL15675-PA 207 GL15675-PA 3..184 4..185 710 74.2 Plus
Dper\GL27164-PA 205 GL27164-PA 8..205 6..203 583 55.3 Plus
Dper\GL17187-PA 220 GL17187-PA 14..187 2..175 539 54 Plus
Dper\GL13857-PA 213 GL13857-PA 9..193 10..198 513 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26078-PA 204 GA26078-PA 1..204 1..204 1050 96.6 Plus
Dpse\GA23499-PA 207 GA23499-PA 3..184 4..185 710 74.2 Plus
Dpse\GA17362-PA 205 GA17362-PA 8..205 6..203 583 55.3 Plus
Dpse\GA20450-PA 220 GA20450-PA 14..187 2..175 539 54 Plus
Dpse\GA16022-PA 213 GA16022-PA 9..193 10..198 513 53.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23016-PA 204 GM23016-PA 1..204 1..204 1079 100 Plus
Dsec\GM15893-PA 207 GM15893-PA 3..184 4..185 717 74.7 Plus
Dsec\GM15089-PA 205 GM15089-PA 8..205 6..203 572 55.5 Plus
Dsec\GM20500-PA 220 GM20500-PA 14..187 2..175 538 54 Plus
Dsec\GM17780-PA 213 GM17780-PA 9..193 10..198 511 53.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12244-PA 207 GD12244-PA 3..184 4..185 717 74.7 Plus
Dsim\GD19996-PA 205 GD19996-PA 8..205 6..203 572 55.5 Plus
Dsim\GD17482-PA 117 GD17482-PA 6..106 44..144 524 96 Plus
Dsim\GD18265-PA 213 GD18265-PA 9..193 10..198 511 53.7 Plus
Dsim\GD15551-PA 201 GD15551-PA 3..200 4..203 506 47.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15815-PA 204 GJ15815-PA 1..204 1..204 1038 96.1 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 3..184 4..185 710 74.2 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 8..205 6..203 574 55.5 Plus
Dvir\GJ20130-PA 220 GJ20130-PA 14..187 2..175 538 54 Plus
Dvir\GJ23131-PA 213 GJ23131-PA 9..193 10..198 518 54.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25049-PA 204 GK25049-PA 1..204 1..204 1052 97.1 Plus
Dwil\GK17214-PA 207 GK17214-PA 3..184 4..185 712 74.2 Plus
Dwil\GK12772-PA 205 GK12772-PA 8..205 6..203 573 55.5 Plus
Dwil\GK19661-PA 220 GK19661-PA 14..187 2..175 537 54 Plus
Dwil\GK13164-PA 213 GK13164-PA 9..193 10..198 514 53.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17866-PA 204 GE17866-PA 1..204 1..204 1079 100 Plus
Dyak\GE22459-PA 207 GE22459-PA 3..184 4..185 717 74.7 Plus
Dyak\Rab1-PA 205 GE25003-PA 8..205 6..203 572 55.5 Plus
Dyak\GE13081-PA 220 GE13081-PA 14..187 2..175 538 54 Plus
Dyak\GE10770-PA 213 GE10770-PA 9..193 10..198 511 53.7 Plus

LD39986.hyp Sequence

Translation from 254 to 868

> LD39986.hyp
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCA*

LD39986.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-PA 204 CG17060-PA 1..204 1..204 1052 100 Plus
Rab8-PC 207 CG8287-PC 3..181 4..182 706 76 Plus
Rab8-PA 207 CG8287-PA 3..181 4..182 706 76 Plus
Rab1-PA 205 CG3320-PA 8..193 6..190 551 57 Plus
Rab3-PA 220 CG7576-PA 14..187 2..175 531 54 Plus