Clone LD40028 Report

Search the DGRC for LD40028

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:400
Well:28
Vector:pOT2
Associated Gene/Transcriptshep-RA
Protein status:LD40028.pep: gold
Preliminary Size:670
Sequenced Size:2522

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10647 2002-01-01 Sim4 clustering to Release 2
CG32423 2002-05-18 Blastp of sequenced clone
CG32423 2003-01-01 Sim4 clustering to Release 3
shep 2008-04-29 Release 5.5 accounting
shep 2008-08-15 Release 5.9 accounting
shep 2008-12-18 5.12 accounting

Clone Sequence Records

LD40028.complete Sequence

2522 bp (2522 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118564

> LD40028.complete
CGTTGCGCTTTCTTCGTTTTTTTCGGCTGCGCAAACTTATATTTTGTCGT
TGTAATATTTTGCATAAATATATAAATTAAAACGCGTGACGGAACAACAA
ACAAATAACGAAGACAGCAAAATAAAAGGGCGAAAAATCGAAACGAAAAC
GAGTCGAATTACTTTCAAGTGCAAATAGTGTGCGTGGGCGTGAGATTGTG
TGTGTGTGTTGTGTTTGTGCGACTGTGAGTGCGTGTGTTTGTGTGCAAAA
AAAAAACAGAACGTGCAACAAGAAGCAAGAAGAAGAGCCATCAGCAGCTG
ACAAACCAGCAATAAAACGAAATTTCAATAATCACAAGTCAATTTAAGAG
TGCTATTAAGAAACTAGAAAAAATGCACCCACGATACAGCCCAGCCCCGC
CCCCTCAGCAACAGCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGC
GGCGGGGGAGGTGGAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCA
ATTGCCGCCGCAGATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGT
CTAGCGCCGCCGCCGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCC
CCGCTCACCGCCTCAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCC
ACCGGCCATGACAAGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCG
CCGGTGCACCTTATCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCC
CCGGCCGCTGCCGCAGCCGCCGCTGCTGTTGCCCAGCAGGCAGCCTACCG
CTATACGGCGCCGCTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACA
CGGCCACGACACCGGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCA
GCCTCACCGAGCAACACCAACTCGAGCAGCTCCTCGAACACTGGCTCCCA
GAGCGGCACCCTGAGCACCAGCCTGAGCAACACGACGAACACCAACACGA
ACATGGGTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGCGGCGAG
CAGTTGTCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGGCACAAC
CGACAAGGATCTAGTTAATATGTGTGCACAATACGGAACAATTATATCAA
CCAAGGCTATTTTAGATAAAACAACAAACAAATGTAAAGGTTACGGCTTC
GTCGACTTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGGATTGCA
GGGGAAGGGCGTGCAAGCTCAGATGGCCAAACAACAGGAACAGGATCCCA
CAAATTTGTATATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTG
GAGGCAATGCTATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCG
TGATCAGCAGATGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTC
GCGAGAAGTGCGAGCAAATCATTCAGATGTTCAATGGTAACACAATACCG
GGTGCCAAAGATCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAA
GAAGAATCTCTTCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACG
TCTCCGCGGAGGGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAAT
GGAGTCAGCGTGAACGTGGGCACACCCATCGGAGTGCCCTACTCCCGCTT
CAGCGCCCCCCAGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTC
CGGGTTACATGATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAG
TACATGCAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACC
GGAGGCGGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCG
GTGATACGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTG
CAGATTGGCAACTCTTATATTAGTCCAACTTATCCATATTATGCACCACC
ACCAACTATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCA
CAGCTGCATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCT
CCCAAATAGGTCTTCGCGAGCTATAATATATTAGTACCCCATTTGAGTAC
TATATAAATTGGACGAGAGTGAGAGCAAGCCGGAGGCGGAGAAGCGGAAA
AGCCAAGGAGGGAGGAGAATCAACATCAAAAGCAGAGGATCGGATAAAGG
AGTCTACAACAACCACCACATGAACAACAACTAGAAGAGGGAACTGCTGA
AGCAACAACATCGGCAGAAGAAACAAAAACCCAGCATCCAGAATCTAGAG
AAAAGCCATCCCGTAATGCCGGGAAAATCCCAGAGAGCGGAGGCAGAAAA
ATAATGTATAAATAAGGCGGTTGGATGTGAGGATGAAGTTTAGGGGGTAC
ATGAATGCGAAAAGAAAAGCCGGTCTCCGAAGAGACGAGCGCATAGGACG
CGAGAAAAAAAAAAAAAAAAAA

LD40028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
shep.l 4723 shep.l 1..2511 1..2511 12555 100 Plus
shep.o 6187 shep.o 1..2511 1..2511 12555 100 Plus
shep.a 3349 shep.a 115..1395 1..1281 6405 100 Plus
shep.a 3349 shep.a 1422..2267 1275..2120 4200 99.7 Plus
shep.a 3349 shep.a 2307..2699 2119..2511 1965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5153786..5154171 2504..2119 1930 100 Minus
chr3L 24539361 chr3L 5155913..5156272 1782..1423 1800 100 Minus
chr3L 24539361 chr3L 5211542..5211877 876..541 1680 100 Minus
chr3L 24539361 chr3L 5270154..5270483 331..1 1605 99.7 Minus
chr3L 24539361 chr3L 5162762..5163016 1130..876 1275 100 Minus
chr3L 24539361 chr3L 5268694..5268903 541..332 1050 100 Minus
chr3L 24539361 chr3L 5155535..5155719 1965..1781 925 100 Minus
chr3L 24539361 chr3L 5155024..5155178 2120..1966 775 100 Minus
chr3L 24539361 chr3L 5156401..5156543 1424..1282 715 100 Minus
chr3L 24539361 chr3L 5159544..5159637 1281..1188 470 100 Minus
chr3L 24539361 chr3L 5160818..5160878 1191..1131 305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5161211..5161603 2511..2119 1965 100 Minus
3L 28110227 3L 5163345..5163704 1782..1423 1800 100 Minus
3L 28110227 3L 5218950..5219285 876..541 1680 100 Minus
3L 28110227 3L 5277614..5277944 331..1 1655 100 Minus
3L 28110227 3L 5170187..5170441 1130..876 1275 100 Minus
3L 28110227 3L 5276154..5276363 541..332 1050 100 Minus
3L 28110227 3L 5162967..5163151 1965..1781 925 100 Minus
3L 28110227 3L 5162456..5162610 2120..1966 775 100 Minus
3L 28110227 3L 5163833..5163975 1424..1282 715 100 Minus
3L 28110227 3L 5166968..5167061 1281..1188 470 100 Minus
3L 28110227 3L 5168242..5168302 1191..1131 305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5154311..5154703 2511..2119 1965 100 Minus
3L 28103327 3L 5156445..5156804 1782..1423 1800 100 Minus
3L 28103327 3L 5212050..5212385 876..541 1680 100 Minus
3L 28103327 3L 5270714..5271044 331..1 1655 100 Minus
3L 28103327 3L 5163287..5163541 1130..876 1275 100 Minus
3L 28103327 3L 5269254..5269463 541..332 1050 100 Minus
3L 28103327 3L 5156067..5156251 1965..1781 925 100 Minus
3L 28103327 3L 5155556..5155710 2120..1966 775 100 Minus
3L 28103327 3L 5156933..5157075 1424..1282 715 100 Minus
3L 28103327 3L 5160068..5160161 1281..1188 470 100 Minus
3L 28103327 3L 5161342..5161402 1191..1131 305 100 Minus
Blast to na_te.dros performed 2019-03-15 13:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1469..1598 2226..2356 157 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2387..2533 850..1003 141 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2383..2518 2213..2349 133 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2417 397..447 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6930 245..455 118 54.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 149..198 400..449 115 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9179..9228 400..449 115 70 Plus

LD40028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:48:45 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5268695..5268903 332..540 100 <- Minus
chr3L 5270154..5270237 248..331 100 == Minus
chr3L 5162762..5163015 877..1130 100 <- Minus
chr3L 5211542..5211580 838..876 100 == Minus
chr3L 5153786..5154169 2121..2504 100 <- Minus
chr3L 5155024..5155178 1966..2120 100 <- Minus
chr3L 5155535..5155717 1783..1965 100 <- Minus
chr3L 5155913..5156271 1424..1782 100 <- Minus
chr3L 5156402..5156543 1282..1423 100 <- Minus
chr3L 5159544..5159635 1190..1281 100 <- Minus
chr3L 5160820..5160878 1131..1189 100 <- Minus
chr3L 5211751..5211877 541..667 100 <- Minus
chr3L 5270288..5270483 1..196 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:50:02 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..1737 373..2109 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:09 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..1737 373..2109 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:12:12 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..1737 373..2109 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:20 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..1737 373..2109 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:44 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..1737 373..2109 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:02 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..2504 1..2504 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:09 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..2504 1..2504 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:12:12 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..2504 1..2504 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:20 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..2504 1..2504 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:44 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 1..2504 1..2504 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:45 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5161218..5161601 2121..2504 100 <- Minus
3L 5162456..5162610 1966..2120 100 <- Minus
3L 5162967..5163149 1783..1965 100 <- Minus
3L 5163345..5163703 1424..1782 100 <- Minus
3L 5163834..5163975 1282..1423 100 <- Minus
3L 5166968..5167059 1190..1281 100 <- Minus
3L 5168244..5168302 1131..1189 100 <- Minus
3L 5170187..5170440 877..1130 100 <- Minus
3L 5218950..5219285 541..876 100 <- Minus
3L 5276155..5276363 332..540 100 <- Minus
3L 5277614..5277944 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:45 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5161218..5161601 2121..2504 100 <- Minus
3L 5162456..5162610 1966..2120 100 <- Minus
3L 5162967..5163149 1783..1965 100 <- Minus
3L 5163345..5163703 1424..1782 100 <- Minus
3L 5163834..5163975 1282..1423 100 <- Minus
3L 5166968..5167059 1190..1281 100 <- Minus
3L 5168244..5168302 1131..1189 100 <- Minus
3L 5170187..5170440 877..1130 100 <- Minus
3L 5218950..5219285 541..876 100 <- Minus
3L 5276155..5276363 332..540 100 <- Minus
3L 5277614..5277944 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:48:45 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5161218..5161601 2121..2504 100 <- Minus
3L 5162456..5162610 1966..2120 100 <- Minus
3L 5162967..5163149 1783..1965 100 <- Minus
3L 5163345..5163703 1424..1782 100 <- Minus
3L 5163834..5163975 1282..1423 100 <- Minus
3L 5166968..5167059 1190..1281 100 <- Minus
3L 5168244..5168302 1131..1189 100 <- Minus
3L 5170187..5170440 877..1130 100 <- Minus
3L 5218950..5219285 541..876 100 <- Minus
3L 5276155..5276363 332..540 100 <- Minus
3L 5277614..5277944 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:12:12 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5160068..5160159 1190..1281 100 <- Minus
arm_3L 5161344..5161402 1131..1189 100 <- Minus
arm_3L 5154318..5154701 2121..2504 100 <- Minus
arm_3L 5155556..5155710 1966..2120 100 <- Minus
arm_3L 5156067..5156249 1783..1965 100 <- Minus
arm_3L 5156445..5156803 1424..1782 100 <- Minus
arm_3L 5156934..5157075 1282..1423 100 <- Minus
arm_3L 5163287..5163540 877..1130 100 <- Minus
arm_3L 5212050..5212385 541..876 100 <- Minus
arm_3L 5269255..5269463 332..540 100 <- Minus
arm_3L 5270714..5271044 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:42 Download gff for LD40028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5154318..5154701 2121..2504 100 <- Minus
3L 5155556..5155710 1966..2120 100 <- Minus
3L 5156067..5156249 1783..1965 100 <- Minus
3L 5156445..5156803 1424..1782 100 <- Minus
3L 5156934..5157075 1282..1423 100 <- Minus
3L 5160068..5160159 1190..1281 100 <- Minus
3L 5161344..5161402 1131..1189 100 <- Minus
3L 5163287..5163540 877..1130 100 <- Minus
3L 5212050..5212385 541..876 100 <- Minus
3L 5269255..5269463 332..540 100 <- Minus
3L 5270714..5271044 1..331 100   Minus

LD40028.pep Sequence

Translation from 372 to 2108

> LD40028.pep
MHPRYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPR
SQNYSNGSSSSAAAAPLTSRSAFPGAPLTASAVALKGALPQRPPAMTSPA
AAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ
PAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS
LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNM
CAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQ
MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK
GVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP
DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGG
YPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ
PRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTM
PMTDSEQASTAASPDEAYTQYPHQAAPK*

LD40028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10470-PA 573 GF10470-PA 22..573 41..578 1922 90.2 Plus
Dana\GF14992-PA 660 GF14992-PA 97..275 230..395 276 34.1 Plus
Dana\GF21392-PA 353 GF21392-PA 1..206 201..388 260 31.8 Plus
Dana\GF21012-PA 757 GF21012-PA 103..279 226..394 255 35.4 Plus
Dana\GF22224-PA 490 GF22224-PA 145..335 220..388 243 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14139-PA 582 GG14139-PA 1..582 1..578 2970 98.8 Plus
Dere\GG12756-PA 466 GG12756-PA 124..311 206..388 272 33.9 Plus
Dere\GG24901-PA 446 GG24901-PA 111..289 230..395 268 33.5 Plus
Dere\GG17743-PA 353 GG17743-PA 1..206 201..388 257 31.3 Plus
Dere\GG12847-PA 513 GG12847-PA 80..272 210..394 237 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15273-PA 609 GH15273-PA 60..609 35..578 2029 92.6 Plus
Dgri\GH13638-PA 726 GH13638-PA 112..285 230..395 265 33.9 Plus
Dgri\GH24423-PA 353 GH24423-PA 1..206 201..388 257 31.3 Plus
Dgri\GH12116-PA 918 GH12116-PA 178..354 226..394 245 33.7 Plus
Dgri\GH24172-PA 365 GH24172-PA 115..288 229..394 229 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
shep-PA 578 CG32423-PA 1..578 1..578 3033 100 Plus
shep-PF 590 CG32423-PF 1..590 1..578 3010 98 Plus
shep-PB 499 CG32423-PB 1..499 96..578 2466 96 Plus
shep-PD 499 CG32423-PD 1..499 96..578 2466 96 Plus
shep-PE 379 CG32423-PE 1..379 211..578 1926 97.1 Plus
shep-PG 379 CG32423-PG 1..379 211..578 1926 97.1 Plus
shep-PI 377 CG32423-PI 1..377 211..578 1914 97.1 Plus
shep-PH 371 CG32423-PH 1..371 211..578 1865 95.5 Plus
Rbp9-PH 439 CG3151-PH 4..282 116..395 330 29.5 Plus
Rbp9-PG 439 CG3151-PG 4..282 116..395 330 29.5 Plus
Rbp9-PF 439 CG3151-PF 4..282 116..395 330 29.5 Plus
Rbp9-PE 439 CG3151-PE 4..282 116..395 330 29.5 Plus
Rbp9-PJ 684 CG3151-PJ 4..282 116..395 330 29.5 Plus
Rbp9-PK 444 CG3151-PK 4..287 116..395 326 29 Plus
Rbp9-PI 444 CG3151-PI 4..287 116..395 326 29 Plus
Rbp9-PB 444 CG3151-PB 4..287 116..395 326 29 Plus
Rbp9-PC 444 CG3151-PC 4..287 116..395 326 29 Plus
elav-PC 479 CG4262-PC 8..324 87..388 279 28.6 Plus
elav-PB 479 CG4262-PB 8..324 87..388 279 28.6 Plus
elav-PA 483 CG4262-PA 12..328 87..388 279 28.6 Plus
elav-PD 483 CG4262-PD 12..328 87..388 279 28.6 Plus
fne-PJ 353 CG4396-PJ 1..206 201..388 255 31.3 Plus
fne-PI 353 CG4396-PI 1..206 201..388 255 31.3 Plus
fne-PD 353 CG4396-PD 1..206 201..388 255 31.3 Plus
fne-PE 356 CG4396-PE 1..209 201..388 252 30.8 Plus
fne-PH 356 CG4396-PH 1..209 201..388 252 30.8 Plus
fne-PG 356 CG4396-PG 1..209 201..388 252 30.8 Plus
fne-PB 356 CG4396-PB 1..209 201..388 252 30.8 Plus
fne-PA 356 CG4396-PA 1..209 201..388 252 30.8 Plus
fne-PC 356 CG4396-PC 1..209 201..388 252 30.8 Plus
ssx-PE 443 CG3056-PE 76..264 214..394 238 34.2 Plus
ssx-PB 443 CG3056-PB 76..264 214..394 238 34.2 Plus
ssx-PD 485 CG3056-PD 76..264 214..394 238 34.2 Plus
Sxl-PE 314 CG43770-PE 33..256 180..394 229 30.2 Plus
Sxl-PA 314 CG43770-PA 33..256 180..394 229 30.2 Plus
Sxl-PAB 322 CG43770-PAB 41..264 180..394 229 30.2 Plus
Sxl-PAC 331 CG43770-PAC 50..273 180..394 229 30.2 Plus
Sxl-PR 342 CG43770-PR 63..286 180..394 229 30.2 Plus
Sxl-PC 344 CG43770-PC 63..286 180..394 229 30.2 Plus
Sxl-PN 344 CG43770-PN 63..286 180..394 229 30.2 Plus
Sxl-PW 344 CG43770-PW 65..288 180..394 229 30.2 Plus
Sxl-PJ 346 CG43770-PJ 65..288 180..394 229 30.2 Plus
Sxl-PG 346 CG43770-PG 65..288 180..394 229 30.2 Plus
Sxl-PP 352 CG43770-PP 73..296 180..394 229 30.2 Plus
Sxl-PT 354 CG43770-PT 73..296 180..394 229 30.2 Plus
Sxl-PD 354 CG43770-PD 73..296 180..394 229 30.2 Plus
Sxl-PL 354 CG43770-PL 73..296 180..394 229 30.2 Plus
Sxl-PO 364 CG43770-PO 63..286 180..394 229 30.2 Plus
Sxl-PH 366 CG43770-PH 65..288 180..394 229 30.2 Plus
Sxl-PY 708 CG43770-PY 73..296 180..394 229 30.2 Plus
Sxl-PX 722 CG43770-PX 65..288 180..394 229 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11982-PA 592 GI11982-PA 30..592 33..578 2039 89.9 Plus
Dmoj\GI11879-PA 724 GI11879-PA 123..301 230..395 275 33.5 Plus
Dmoj\GI16282-PA 353 GI16282-PA 1..206 201..388 257 31.3 Plus
Dmoj\GI15436-PA 475 GI15436-PA 121..320 206..388 244 31.7 Plus
Dmoj\GI21573-PA 367 GI21573-PA 89..288 198..394 222 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15344-PA 109 GL15344-PA 1..91 211..303 480 97.8 Plus
Dper\GL26299-PA 678 GL26299-PA 109..282 230..395 278 34.5 Plus
Dper\GL20654-PA 124 GL20654-PA 21..107 70..156 260 97.7 Plus
Dper\GL22975-PA 385 GL22975-PA 1..206 201..388 257 31.3 Plus
Dper\GL20165-PA 496 GL20165-PA 142..341 206..388 245 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16892-PA 540 GA16892-PA 14..540 57..578 2587 94.6 Plus
Dpse\GA28809-PA 692 GA28809-PA 118..296 230..395 275 33.5 Plus
Dpse\GA22283-PA 353 GA22283-PA 1..206 201..388 257 31.3 Plus
Dpse\GA18065-PA 496 GA18065-PA 142..341 206..388 245 31.7 Plus
Dpse\GA22715-PA 672 GA22715-PA 111..291 222..394 245 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13927-PA 579 GM13927-PA 1..579 1..578 2985 99.5 Plus
Dsec\GM19036-PA 466 GM19036-PA 124..311 206..388 270 33.9 Plus
Dsec\GM18380-PA 650 GM18380-PA 315..493 230..395 269 33.5 Plus
Dsec\GM11591-PA 379 GM11591-PA 36..232 210..388 251 32.2 Plus
Dsec\GM19131-PA 488 GM19131-PA 88..264 226..394 231 34.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13207-PA 576 GD13207-PA 1..576 1..578 2915 98.1 Plus
Dsim\GD17091-PA 371 GD17091-PA 1..209 201..388 273 31.3 Plus
Dsim\GD16475-PA 466 GD16475-PA 124..311 206..388 270 33.9 Plus
Dsim\GD23195-PA 464 GD23195-PA 314..457 230..360 221 34 Plus
Dsim\GD19030-PA 244 GD19030-PA 36..204 226..388 218 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12205-PA 868 GJ12205-PA 352..868 66..578 2000 94.4 Plus
Dvir\GJ13991-PA 725 GJ13991-PA 101..279 230..395 272 33.5 Plus
Dvir\GJ16518-PA 353 GJ16518-PA 1..206 201..388 257 31.3 Plus
Dvir\elav-PA 516 GJ14725-PA 162..361 206..388 243 31.7 Plus
Dvir\Sxl-PA 368 GJ16698-PA 101..289 211..394 226 33.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17327-PA 603 GK17327-PA 1..603 1..578 2038 86.6 Plus
Dwil\GK14865-PA 725 GK14865-PA 120..298 230..395 265 33.5 Plus
Dwil\GK25647-PA 353 GK25647-PA 1..206 201..388 257 31.3 Plus
Dwil\GK16696-PA 508 GK16696-PA 107..283 226..394 250 35.4 Plus
Dwil\GK16120-PA 509 GK16120-PA 155..354 206..388 240 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20568-PA 582 GE20568-PA 1..582 1..578 2950 98.3 Plus
Dyak\GE18193-PA 446 GE18193-PA 111..289 230..395 268 33.5 Plus
Dyak\fne-PA 353 GE17033-PA 1..206 201..388 257 31.3 Plus
Dyak\GE16581-PA 478 GE16581-PA 123..323 206..388 248 31.7 Plus
Dyak\GE16683-PA 563 GE16683-PA 108..284 226..394 237 34.3 Plus

LD40028.hyp Sequence

Translation from 372 to 2108

> LD40028.hyp
MHPRYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPR
SQNYSNGSSSSAAAAPLTSRSAFPGAPLTASAVALKGALPQRPPAMTSPA
AAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ
PAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS
LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNM
CAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQ
MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK
GVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP
DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGG
YPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ
PRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTM
PMTDSEQASTAASPDEAYTQYPHQAAPK*

LD40028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
shep-PA 578 CG32423-PA 1..578 1..578 3033 100 Plus
shep-PF 590 CG32423-PF 1..590 1..578 3010 98 Plus
shep-PB 499 CG32423-PB 1..499 96..578 2466 96 Plus
shep-PD 499 CG32423-PD 1..499 96..578 2466 96 Plus
shep-PE 379 CG32423-PE 1..379 211..578 1926 97.1 Plus