Clone LD40103 Report

Search the DGRC for LD40103

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:3
Vector:pOT2
Associated Gene/TranscriptCG4586-RA
Protein status:LD40103.pep: gold
Preliminary Size:2164
Sequenced Size:2235

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4586 2001-01-01 Release 2 assignment
CG4586 2002-05-20 Blastp of sequenced clone
CG4586 2003-01-01 Sim4 clustering to Release 3
CG4586 2008-04-29 Release 5.5 accounting
CG4586 2008-08-15 Release 5.9 accounting
CG4586 2008-12-18 5.12 accounting

Clone Sequence Records

LD40103.complete Sequence

2235 bp (2235 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118566

> LD40103.complete
AGCAGAGAAGTTGGGAAATCCCGTAGAAAAGTAAAACTCTAGGAAAAGAG
AGATCGGGAAGGAGAGATAGAGCGATCATGTCTGTGAATGCGGATCTGCA
GAGAGAGCGGGCGGCGGCCACCTTGGACAGCGAGGACTTTGCCCGCTGGT
GGGCGGGTGGCTCTGGGCAGCTGGAGGAGCGCCGCGCCCTGGAAAGGCGT
TTCTATGAGGATCCCGACTTCGCGGAGCCAGTGCATCCGAGCTGTCTGTC
ATACAAGGAGCGCTACGAACAGACCGTGGCCCGATCCACACGCTTCCTGG
CCAAACTGCGCCAATGGCAGCGGGAGAAGCAGCCACAACTTCAGCTTAGT
GTGAATATGCTGAGGGACTTTCGGCTGCTACTCTCCGGATCCCTGGGCAC
GGGCCTCTTCCAGCAGAGCTTCCCCCTTCGGGTGCATTTCTCCATGTTCA
TGACCACCTTGCTGAGCCAGGGAACCGAGGAGCAGCAGGCCCAGTGGCTC
AATCGATCCTGGCACATGGACGGCGTCCTGGGCACCTATGCGCAAACGGA
GCTGGGTCACGGCACCTTTGTCCGGGGCCTGGAAACCCGAGCCGACTACG
ATCCCATCACGCAGGAATTCATCCTGAACACCCCAACGCAAAGTTCATAC
AAGTGGTGGCCCGGCGGACTTGGTAATACCGCCAATGTGGCCATTGTGCT
GGCCCAGCTATATGTGAAGGGCAAGCATTATGGCTTGCAATCATTTGTGG
TGAGGATCAGGGACGAGAGGACACACGAACCGTTGACTGGAGTCGATGTG
GGCGATATAGGACCTCGCCTGGGTGGCAATGGCGTTAACAACGGCTTTCT
GGGACTCCGCGACGTGCGGATACCGCGCAATCAAATGCTGATGAAGAACG
CCCAAGTCCTGACCGACGGCACCTTCGTCCAGGGTAGACCTCCGCTGCTG
CTCTACGGCACAATGGTCTATGTGCGGGTAATTACCGTGAAGGATGTGCT
CTTTGGACTGCTCCAGGCTGCCACCATTGCCACCAGGTATTCCGTGGTGC
GTCGCCAGAGCCGGATTAACAGCGATCAGCCGGAGGTCTCTGTTTTGGAT
CACATCACACAGCAGGCAAAGATTCTACCGCAAATTGCTCGAGGAGTGTC
CTATCGCCTGGTATCCGATTGGCTGTGGCGCTTCTACGAGGACGTACTCC
GCCAACTGGAGGATGAAAGCACGAAAGGACGCAACTCCCTGCCGGAGCTG
CACGCCCTGAGCTGCTGCCTCAAGGCGGTGGCCACCGACGAGGCCAGCGA
GGGAGTTGATCTGCTGCGCAAGAGTTGCGGTGGCCACGGATTCCTTTCCT
CGGCGAATTTCGATAGCATCTATGGTCTGACCGCCGCCACATACACCTAC
GAGGGAGAGTACACAGTACTCCTGCTCCAGACAGCTCGTTTCCTCGTCCG
GCAGTATGCGGATAGCTTAAAACGCAAGGTGCTGCCCTCCAGTGTCTCCT
ATTTGAGGGATACAGCCCGTTTGATTTGGGGCAAGAATCTGGTTGCGAAT
TGTGTGCGAGCGCTGGAGATTTCAGCCATGGAGCAGGTGCGTGATGCTTG
GCAGACCCAGAAGATGCACCAATCCGGCAAGGTGAGTCCCGAGATGGCCA
GCAATCTGGCTGGAAGGCAGCTCACCTCGGCTGCCATAGCCCATGCTCAC
GCATTCTTCACACGCAATGCACTGGAGCAAGTGGAAGCACTTCGAAAGAA
GGGCGATCTTAGCCCGAATGTCTCACTCATCTTGGGCCAACTGGTTGAGC
TTTTCGTCATCGATACATTCCTGCGACAGTCGGGATGCGTGCTGCGTTGG
AACAACGGCATCACTGGCACCCAACTGCGCTTCGTGGAGCGTCGCTTTGA
GGAGCTGCTGGCCAAGCTGCGACCCAATGCGGTGGCTCTGGTGGATGGAT
TCGATTTTCACGATCGTGTCCTGGGCTCCACGCTGGGGTGTCACGATGGC
CGGGTGTACGAGCGTCTCATGGAGGAGGCACGCCGAAATCCGATCAACCA
GGAGCCGGTCAACTCGTCCTTCCACAACCACTTGTTGCCCATGATGCGGG
GAAAGCTGTGATGTGGGGCTGGTCTTTTGTTTTCTACATACGTATATGTT
ATTCACTAATTTTTGTATTGAAGTTGAATCATAACATTTTTTTTTAATAA
AGGAAATAGGATTTCGCAAAAAAAAAAAAAAAAAA

LD40103.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4586-RA 2382 CG4586-RA 157..2375 1..2219 11095 100 Plus
CG4586.a 2554 CG4586.a 334..2552 1..2219 11095 100 Plus
CG5009-RA 2637 CG5009-RA 877..1014 531..668 255 78.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6863241..6864423 1035..2217 5750 99.1 Plus
chrX 22417052 chrX 6862099..6863136 1..1038 5160 99.8 Plus
chr2R 21145070 chr2R 13649634..13649771 531..668 255 79 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6971083..6972267 1035..2219 5925 100 Plus
X 23542271 X 6969941..6970978 1..1038 5190 100 Plus
2R 25286936 2R 17762497..17762634 531..668 255 79 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6979181..6980365 1035..2219 5925 100 Plus
X 23527363 X 6978039..6979076 1..1038 5190 100 Plus
2R 25260384 2R 17763696..17763833 531..668 255 78.9 Plus
Blast to na_te.dros performed on 2019-03-15 22:29:37 has no hits.

LD40103.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:23 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6862099..6863134 1..1036 99 -> Plus
chrX 6863243..6864423 1037..2217 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:24 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2034 78..2111 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:39:01 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2034 78..2111 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:22:22 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2034 78..2111 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:48 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2034 78..2111 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:02 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2034 78..2111 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:12:07 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2217 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:39:01 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2217 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:22:22 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 25..2241 1..2217 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:48 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 1..2217 1..2217 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:02 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
CG4586-RA 24..2240 1..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:23 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
X 6969941..6970976 1..1036 100 -> Plus
X 6971085..6972265 1037..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:23 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
X 6969941..6970976 1..1036 100 -> Plus
X 6971085..6972265 1037..2217 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:23 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
X 6969941..6970976 1..1036 100 -> Plus
X 6971085..6972265 1037..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:22:22 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6863974..6865009 1..1036 100 -> Plus
arm_X 6865118..6866298 1037..2217 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:21 Download gff for LD40103.complete
Subject Subject Range Query Range Percent Splice Strand
X 6978039..6979074 1..1036 100 -> Plus
X 6979183..6980363 1037..2217 100   Plus

LD40103.pep Sequence

Translation from 77 to 2110

> LD40103.pep
MSVNADLQRERAAATLDSEDFARWWAGGSGQLEERRALERRFYEDPDFAE
PVHPSCLSYKERYEQTVARSTRFLAKLRQWQREKQPQLQLSVNMLRDFRL
LLSGSLGTGLFQQSFPLRVHFSMFMTTLLSQGTEEQQAQWLNRSWHMDGV
LGTYAQTELGHGTFVRGLETRADYDPITQEFILNTPTQSSYKWWPGGLGN
TANVAIVLAQLYVKGKHYGLQSFVVRIRDERTHEPLTGVDVGDIGPRLGG
NGVNNGFLGLRDVRIPRNQMLMKNAQVLTDGTFVQGRPPLLLYGTMVYVR
VITVKDVLFGLLQAATIATRYSVVRRQSRINSDQPEVSVLDHITQQAKIL
PQIARGVSYRLVSDWLWRFYEDVLRQLEDESTKGRNSLPELHALSCCLKA
VATDEASEGVDLLRKSCGGHGFLSSANFDSIYGLTAATYTYEGEYTVLLL
QTARFLVRQYADSLKRKVLPSSVSYLRDTARLIWGKNLVANCVRALEISA
MEQVRDAWQTQKMHQSGKVSPEMASNLAGRQLTSAAIAHAHAFFTRNALE
QVEALRKKGDLSPNVSLILGQLVELFVIDTFLRQSGCVLRWNNGITGTQL
RFVERRFEELLAKLRPNAVALVDGFDFHDRVLGSTLGCHDGRVYERLMEE
ARRNPINQEPVNSSFHNHLLPMMRGKL*

LD40103.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21407-PA 671 GF21407-PA 1..671 1..677 2976 81.1 Plus
Dana\GF11673-PA 669 GF11673-PA 6..669 3..677 1657 45.7 Plus
Dana\GF12816-PA 677 GF12816-PA 11..677 2..677 1383 42.7 Plus
Dana\GF12814-PA 675 GF12814-PA 9..675 2..677 1330 41.5 Plus
Dana\GF12815-PA 827 GF12815-PA 192..827 23..677 1263 42 Plus
Dana\GF12815-PA 827 GF12815-PA 9..197 2..197 373 43.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19624-PA 677 GG19624-PA 1..677 1..677 3344 92.9 Plus
Dere\GG21822-PA 669 GG21822-PA 6..669 3..677 1639 45 Plus
Dere\GG22113-PA 677 GG22113-PA 11..677 2..677 1406 42.1 Plus
Dere\GG22112-PA 682 GG22112-PA 16..682 2..677 1359 42.6 Plus
Dere\GG23624-PA 703 GG23624-PA 115..680 105..655 598 32 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11897-PA 694 GH11897-PA 9..694 6..677 2298 63 Plus
Dgri\GH22025-PA 669 GH22025-PA 4..669 1..677 1645 45.5 Plus
Dgri\GH21832-PA 677 GH21832-PA 11..677 2..677 1392 43.1 Plus
Dgri\GH21827-PA 676 GH21827-PA 10..676 2..677 1334 42.1 Plus
Dgri\GH21830-PA 676 GH21830-PA 10..676 2..677 1312 41.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4586-PA 677 CG4586-PA 1..677 1..677 3505 100 Plus
CG5009-PA 669 CG5009-PA 6..669 3..677 1588 45.1 Plus
Acox57D-d-PA 677 CG9709-PA 11..677 2..677 1379 43 Plus
Acox57D-p-PB 677 CG9707-PB 11..677 2..677 1313 42.5 Plus
Acox57D-p-PA 677 CG9707-PA 11..677 2..677 1313 42.5 Plus
CG9527-PD 703 CG9527-PD 115..680 105..655 589 30.9 Plus
CG9527-PC 703 CG9527-PC 115..680 105..655 589 30.9 Plus
CG9527-PA 703 CG9527-PA 115..680 105..655 589 30.9 Plus
CG9527-PB 724 CG9527-PB 136..701 105..655 589 30.9 Plus
CG17544-PD 693 CG17544-PD 50..693 40..677 501 27 Plus
CG17544-PB 693 CG17544-PB 50..693 40..677 501 27 Plus
CG17544-PC 693 CG17544-PC 50..693 40..677 501 27 Plus
CG17544-PA 693 CG17544-PA 50..693 40..677 501 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15906-PA 685 GI15906-PA 10..681 6..674 2326 64.3 Plus
Dmoj\GI19114-PA 669 GI19114-PA 4..669 1..677 1665 45.4 Plus
Dmoj\GI19075-PA 677 GI19075-PA 11..677 2..677 1377 41.5 Plus
Dmoj\GI19074-PA 676 GI19074-PA 10..676 2..677 1338 42.9 Plus
Dmoj\GI19073-PA 676 GI19073-PA 10..676 2..677 1298 41.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17222-PA 669 GL17222-PA 6..669 3..677 1637 45.3 Plus
Dper\GL13310-PA 414 GL13310-PA 3..385 2..384 1468 70 Plus
Dper\GL11771-PA 677 GL11771-PA 11..677 2..677 1368 42.3 Plus
Dper\GL11770-PA 669 GL11770-PA 9..669 2..677 1304 41.9 Plus
Dper\GL26258-PA 722 GL26258-PA 89..699 53..655 615 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18278-PA 674 GA18278-PA 3..674 2..677 2812 78.1 Plus
Dpse\GA18591-PA 669 GA18591-PA 6..669 3..677 1642 45.6 Plus
Dpse\GA21981-PA 677 GA21981-PA 11..677 2..677 1369 42.3 Plus
Dpse\GA21980-PA 675 GA21980-PA 9..675 2..677 1321 42.4 Plus
Dpse\GA21857-PA 722 GA21857-PA 89..699 53..655 612 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17495-PA 555 GM17495-PA 1..555 123..677 2900 97.1 Plus
Dsec\GM21823-PA 669 GM21823-PA 6..669 3..677 1657 45.4 Plus
Dsec\GM15835-PA 677 GM15835-PA 11..677 2..677 1367 42.1 Plus
Dsec\GM15834-PA 682 GM15834-PA 16..682 2..677 1354 42.4 Plus
Dsec\GM17941-PA 703 GM17941-PA 115..680 105..655 588 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16824-PA 677 GD16824-PA 1..677 1..677 3545 97.5 Plus
Dsim\GD11316-PA 669 GD11316-PA 6..669 3..677 1649 45.3 Plus
Dsim\GD11595-PA 649 GD11595-PA 11..649 2..677 1337 41.2 Plus
Dsim\GD11593-PA 679 GD11593-PA 16..679 2..677 1298 42 Plus
Dsim\GD22578-PA 535 GD22578-PA 115..505 105..486 553 35.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16816-PA 697 GJ16816-PA 9..697 6..677 2435 64.5 Plus
Dvir\GJ22244-PA 669 GJ22244-PA 4..669 1..677 1640 44.6 Plus
Dvir\GJ20049-PA 677 GJ20049-PA 11..677 2..677 1408 43 Plus
Dvir\GJ20047-PA 676 GJ20047-PA 10..676 2..677 1336 42.1 Plus
Dvir\GJ20048-PA 676 GJ20048-PA 10..676 2..677 1309 41.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25030-PA 674 GK25030-PA 1..674 3..677 2528 69.9 Plus
Dwil\GK22892-PA 669 GK22892-PA 6..669 3..677 1643 45.3 Plus
Dwil\GK20900-PA 676 GK20900-PA 11..676 2..677 1356 42 Plus
Dwil\GK20899-PA 674 GK20899-PA 8..674 2..677 1317 42.6 Plus
Dwil\GK15355-PA 703 GK15355-PA 116..680 105..655 623 32.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15692-PA 677 GE15692-PA 1..677 1..677 3350 93.1 Plus
Dyak\GE11899-PA 669 GE11899-PA 6..669 3..677 1643 45.1 Plus
Dyak\GE12195-PA 677 GE12195-PA 11..677 2..677 1405 42.4 Plus
Dyak\GE12194-PA 682 GE12194-PA 16..682 2..677 1333 42.4 Plus
Dyak\GE18444-PA 703 GE18444-PA 115..680 105..655 599 32 Plus

LD40103.hyp Sequence

Translation from 77 to 2110

> LD40103.hyp
MSVNADLQRERAAATLDSEDFARWWAGGSGQLEERRALERRFYEDPDFAE
PVHPSCLSYKERYEQTVARSTRFLAKLRQWQREKQPQLQLSVNMLRDFRL
LLSGSLGTGLFQQSFPLRVHFSMFMTTLLSQGTEEQQAQWLNRSWHMDGV
LGTYAQTELGHGTFVRGLETRADYDPITQEFILNTPTQSSYKWWPGGLGN
TANVAIVLAQLYVKGKHYGLQSFVVRIRDERTHEPLTGVDVGDIGPRLGG
NGVNNGFLGLRDVRIPRNQMLMKNAQVLTDGTFVQGRPPLLLYGTMVYVR
VITVKDVLFGLLQAATIATRYSVVRRQSRINSDQPEVSVLDHITQQAKIL
PQIARGVSYRLVSDWLWRFYEDVLRQLEDESTKGRNSLPELHALSCCLKA
VATDEASEGVDLLRKSCGGHGFLSSANFDSIYGLTAATYTYEGEYTVLLL
QTARFLVRQYADSLKRKVLPSSVSYLRDTARLIWGKNLVANCVRALEISA
MEQVRDAWQTQKMHQSGKVSPEMASNLAGRQLTSAAIAHAHAFFTRNALE
QVEALRKKGDLSPNVSLILGQLVELFVIDTFLRQSGCVLRWNNGITGTQL
RFVERRFEELLAKLRPNAVALVDGFDFHDRVLGSTLGCHDGRVYERLMEE
ARRNPINQEPVNSSFHNHLLPMMRGKL*

LD40103.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4586-PA 677 CG4586-PA 1..677 1..677 3505 100 Plus
CG5009-PA 669 CG5009-PA 6..669 3..677 1588 45.1 Plus
Acox57D-d-PA 677 CG9709-PA 11..677 2..677 1379 43 Plus
Acox57D-p-PB 677 CG9707-PB 11..677 2..677 1313 42.5 Plus
Acox57D-p-PA 677 CG9707-PA 11..677 2..677 1313 42.5 Plus