BDGP Sequence Production Resources |
Search the DGRC for LD40134
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 401 |
Well: | 34 |
Vector: | pOT2 |
Associated Gene/Transcript | Pli-RA |
Protein status: | LD40134.pep: gold |
Preliminary Size: | 1968 |
Sequenced Size: | 1863 |
Gene | Date | Evidence |
---|---|---|
CG5212 | 2001-01-01 | Release 2 assignment |
CG5212 | 2001-11-29 | Blastp of sequenced clone |
CG5212 | 2003-01-01 | Sim4 clustering to Release 3 |
Pli | 2008-04-29 | Release 5.5 accounting |
Pli | 2008-08-15 | Release 5.9 accounting |
Pli | 2008-12-18 | 5.12 accounting |
1863 bp (1863 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069632
> LD40134.complete CAAAAACCACCGCCCGCATAACCACGCATCGTTATTTGTTGTTGTCTACG CCGTTTAATCGCTGACAATTAACAACAAAACAATAACAGGAACGGCAGGC ACTGCCTTCACTTTAAGAGAAGCCCGCGAATCGAAACTGCCAGGCGATCG AAGTCGAGGCGATTTTAAATCGAAAACGCGCGCGAGATGCGGAAAAGCCA AACGCCGCGAGCTTTGTTTATGTGTATCGGAAAATAACATAAGAAAATCC CTTAGATTCTTTGTGCGGATGAGCCAGTGCGAAAGCAATATCAATAATAT CCCAAGCAGATTGCTGAATAAATCGCATTCGAGAGGTTTGACTAAAAGAT CGGCAAAATTAATTTCCGTCGCATTAAAATCTTTACATCAAAACTGGATT ATAACAGATCCGTTGATATTGGCACTCAGCAGGAAAACAACTCGGGGGTA ACCAACAAAATGGTGAAACGCACCGACGGCACTGAATCTCCCATACTGGC TGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTACGGTGAAC TAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCGCGGTCGA CGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTGGCGTCAA GCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAGGCCATTC TGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAACCAGGCG GTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTCAGGTGGG ACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACGCTGCCAG GCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCGGTTCGCC TGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAATATTCGC TGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAGGCCACCA AGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGGTGTGCTG ATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGTGCGGACT ATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGCGAATCGC GTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAACATTCTG CAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTTGGCGTTC CGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAGAAACTTA TCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCTGAACACG CTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACCAGCCTTA CGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGGGGTCAGG ATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACTCGGTCCG GTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGGACGTGGG CGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACTGAAAAAA CTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAACGGATTT CAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGACTGGCTA CATAAAGTTAATATTCCAGGATAATCTAGATTAAATATAAATTTAATGGA TTAACAAATGTATTTACGTCTATATAGATACTGTAGTAATTGAAAGATGT CCAAGTTTGAAGCAGGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pli.b | 3012 | Pli.b | 65..1888 | 1..1824 | 9120 | 100 | Plus |
Pli.c | 3036 | Pli.c | 65..1888 | 1..1824 | 9120 | 100 | Plus |
Pli.d | 3428 | Pli.d | 792..2282 | 334..1824 | 7455 | 100 | Plus |
Pli.d | 3428 | Pli.d | 22..358 | 1..337 | 1685 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19713116..19713451 | 337..1 | 1620 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 19686391..19686630 | 802..563 | 1185 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 19684707..19684919 | 1820..1608 | 1065 | 100 | Minus |
chr3R | 27901430 | chr3R | 19685863..19686058 | 988..793 | 965 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 19685608..19685797 | 1176..987 | 950 | 100 | Minus |
chr3R | 27901430 | chr3R | 19684991..19685169 | 1607..1429 | 880 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 19685228..19685383 | 1430..1275 | 750 | 98.7 | Minus |
chr3R | 27901430 | chr3R | 19712481..19712617 | 470..334 | 685 | 100 | Minus |
chr3R | 27901430 | chr3R | 19685445..19685544 | 1275..1176 | 485 | 99 | Minus |
chr3R | 27901430 | chr3R | 19688980..19689073 | 563..470 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23889692..23890028 | 337..1 | 1685 | 100 | Minus |
3R | 32079331 | 3R | 23862976..23863215 | 802..563 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23861289..23861505 | 1824..1608 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 988..793 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 1176..987 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23861577..23861755 | 1607..1429 | 895 | 100 | Minus |
3R | 32079331 | 3R | 23861814..23861969 | 1430..1275 | 780 | 100 | Minus |
3R | 32079331 | 3R | 23889057..23889193 | 470..334 | 685 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 1275..1176 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 563..470 | 470 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23630523..23630859 | 337..1 | 1685 | 100 | Minus |
3R | 31820162 | 3R | 23603807..23604046 | 802..563 | 1185 | 99.5 | Minus |
3R | 31820162 | 3R | 23602120..23602336 | 1824..1608 | 1085 | 100 | Minus |
3R | 31820162 | 3R | 23603280..23603475 | 988..793 | 980 | 100 | Minus |
3R | 31820162 | 3R | 23603025..23603214 | 1176..987 | 950 | 100 | Minus |
3R | 31820162 | 3R | 23602408..23602586 | 1607..1429 | 895 | 100 | Minus |
3R | 31820162 | 3R | 23602645..23602800 | 1430..1275 | 780 | 100 | Minus |
3R | 31820162 | 3R | 23629888..23630024 | 470..334 | 685 | 100 | Minus |
3R | 31820162 | 3R | 23602862..23602961 | 1275..1176 | 500 | 100 | Minus |
3R | 31820162 | 3R | 23606394..23606487 | 563..470 | 470 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19684707..19684919 | 1608..1820 | 100 | <- | Minus |
chr3R | 19684991..19685168 | 1430..1607 | 99 | <- | Minus |
chr3R | 19685229..19685382 | 1276..1429 | 98 | <- | Minus |
chr3R | 19685445..19685543 | 1177..1275 | 98 | <- | Minus |
chr3R | 19685608..19685796 | 988..1176 | 100 | <- | Minus |
chr3R | 19685864..19686055 | 796..987 | 99 | <- | Minus |
chr3R | 19686398..19686629 | 564..795 | 100 | <- | Minus |
chr3R | 19688980..19689072 | 471..563 | 100 | <- | Minus |
chr3R | 19712481..19712615 | 336..470 | 100 | <- | Minus |
chr3R | 19713118..19713451 | 1..335 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RC | 1..1275 | 460..1734 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RC | 1..1275 | 460..1734 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 1..1275 | 460..1734 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RC | 1..1275 | 460..1734 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 1..1275 | 460..1734 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 48..1867 | 1..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 48..1867 | 1..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 25..1844 | 1..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 48..1867 | 1..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pli-RA | 25..1844 | 1..1820 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23862450..23862641 | 796..987 | 100 | <- | Minus |
3R | 23862983..23863214 | 564..795 | 100 | <- | Minus |
3R | 23865563..23865655 | 471..563 | 100 | <- | Minus |
3R | 23889057..23889191 | 336..470 | 100 | <- | Minus |
3R | 23861293..23861505 | 1608..1820 | 100 | <- | Minus |
3R | 23861577..23861754 | 1430..1607 | 100 | <- | Minus |
3R | 23861815..23861968 | 1276..1429 | 100 | <- | Minus |
3R | 23862031..23862129 | 1177..1275 | 100 | <- | Minus |
3R | 23862194..23862382 | 988..1176 | 100 | <- | Minus |
3R | 23889694..23890028 | 1..335 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23862450..23862641 | 796..987 | 100 | <- | Minus |
3R | 23862983..23863214 | 564..795 | 100 | <- | Minus |
3R | 23865563..23865655 | 471..563 | 100 | <- | Minus |
3R | 23889057..23889191 | 336..470 | 100 | <- | Minus |
3R | 23861293..23861505 | 1608..1820 | 100 | <- | Minus |
3R | 23861577..23861754 | 1430..1607 | 100 | <- | Minus |
3R | 23861815..23861968 | 1276..1429 | 100 | <- | Minus |
3R | 23862031..23862129 | 1177..1275 | 100 | <- | Minus |
3R | 23862194..23862382 | 988..1176 | 100 | <- | Minus |
3R | 23889694..23890028 | 1..335 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23862450..23862641 | 796..987 | 100 | <- | Minus |
3R | 23862983..23863214 | 564..795 | 100 | <- | Minus |
3R | 23865563..23865655 | 471..563 | 100 | <- | Minus |
3R | 23889057..23889191 | 336..470 | 100 | <- | Minus |
3R | 23861293..23861505 | 1608..1820 | 100 | <- | Minus |
3R | 23861577..23861754 | 1430..1607 | 100 | <- | Minus |
3R | 23861815..23861968 | 1276..1429 | 100 | <- | Minus |
3R | 23862031..23862129 | 1177..1275 | 100 | <- | Minus |
3R | 23862194..23862382 | 988..1176 | 100 | <- | Minus |
3R | 23889694..23890028 | 1..335 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19687015..19687227 | 1608..1820 | 100 | <- | Minus |
arm_3R | 19687299..19687476 | 1430..1607 | 100 | <- | Minus |
arm_3R | 19687537..19687690 | 1276..1429 | 100 | <- | Minus |
arm_3R | 19687753..19687851 | 1177..1275 | 100 | <- | Minus |
arm_3R | 19687916..19688104 | 988..1176 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 796..987 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 564..795 | 100 | <- | Minus |
arm_3R | 19691285..19691377 | 471..563 | 100 | <- | Minus |
arm_3R | 19714779..19714913 | 336..470 | 100 | <- | Minus |
arm_3R | 19715416..19715750 | 1..335 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23603281..23603472 | 796..987 | 100 | <- | Minus |
3R | 23602124..23602336 | 1608..1820 | 100 | <- | Minus |
3R | 23602408..23602585 | 1430..1607 | 100 | <- | Minus |
3R | 23602646..23602799 | 1276..1429 | 100 | <- | Minus |
3R | 23602862..23602960 | 1177..1275 | 100 | <- | Minus |
3R | 23603025..23603213 | 988..1176 | 100 | <- | Minus |
3R | 23603814..23604045 | 564..795 | 100 | <- | Minus |
3R | 23606394..23606486 | 471..563 | 100 | <- | Minus |
3R | 23629888..23630022 | 336..470 | 100 | <- | Minus |
3R | 23630525..23630859 | 1..335 | 100 | Minus |
Translation from 459 to 1733
> LD40134.pep MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV CPFCATPLDGATGYIKLIFQDNLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18733-PA | 424 | GF18733-PA | 1..424 | 1..424 | 2282 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12398-PA | 424 | GG12398-PA | 1..424 | 1..424 | 2295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10673-PA | 424 | GH10673-PA | 1..424 | 1..424 | 2258 | 98.1 | Plus |
Dgri\GH23212-PA | 128 | GH23212-PA | 1..109 | 5..113 | 568 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pli-PB | 424 | CG5212-PB | 1..424 | 1..424 | 2283 | 100 | Plus |
Pli-PA | 424 | CG5212-PA | 1..424 | 1..424 | 2283 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23056-PA | 443 | GI23056-PA | 22..443 | 3..424 | 2252 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24265-PA | 359 | GL24265-PA | 4..359 | 5..424 | 1582 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18740-PA | 424 | GA18740-PA | 1..424 | 1..424 | 2266 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23534-PA | 424 | GM23534-PA | 1..424 | 1..424 | 2295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18346-PA | 424 | GD18346-PA | 1..424 | 1..424 | 2295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24639-PA | 424 | GJ24639-PA | 1..424 | 1..424 | 2272 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11979-PA | 424 | GK11979-PA | 1..424 | 1..424 | 2260 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23916-PA | 424 | GE23916-PA | 1..424 | 1..424 | 2295 | 100 | Plus |
Translation from 459 to 1733
> LD40134.hyp MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV CPFCATPLDGATGYIKLIFQDNLD*