Clone LD40134 Report

Search the DGRC for LD40134

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:34
Vector:pOT2
Associated Gene/TranscriptPli-RA
Protein status:LD40134.pep: gold
Preliminary Size:1968
Sequenced Size:1863

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5212 2001-01-01 Release 2 assignment
CG5212 2001-11-29 Blastp of sequenced clone
CG5212 2003-01-01 Sim4 clustering to Release 3
Pli 2008-04-29 Release 5.5 accounting
Pli 2008-08-15 Release 5.9 accounting
Pli 2008-12-18 5.12 accounting

Clone Sequence Records

LD40134.complete Sequence

1863 bp (1863 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069632

> LD40134.complete
CAAAAACCACCGCCCGCATAACCACGCATCGTTATTTGTTGTTGTCTACG
CCGTTTAATCGCTGACAATTAACAACAAAACAATAACAGGAACGGCAGGC
ACTGCCTTCACTTTAAGAGAAGCCCGCGAATCGAAACTGCCAGGCGATCG
AAGTCGAGGCGATTTTAAATCGAAAACGCGCGCGAGATGCGGAAAAGCCA
AACGCCGCGAGCTTTGTTTATGTGTATCGGAAAATAACATAAGAAAATCC
CTTAGATTCTTTGTGCGGATGAGCCAGTGCGAAAGCAATATCAATAATAT
CCCAAGCAGATTGCTGAATAAATCGCATTCGAGAGGTTTGACTAAAAGAT
CGGCAAAATTAATTTCCGTCGCATTAAAATCTTTACATCAAAACTGGATT
ATAACAGATCCGTTGATATTGGCACTCAGCAGGAAAACAACTCGGGGGTA
ACCAACAAAATGGTGAAACGCACCGACGGCACTGAATCTCCCATACTGGC
TGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTACGGTGAAC
TAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCGCGGTCGA
CGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTGGCGTCAA
GCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAGGCCATTC
TGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAACCAGGCG
GTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTCAGGTGGG
ACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACGCTGCCAG
GCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCGGTTCGCC
TGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAATATTCGC
TGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAGGCCACCA
AGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGGTGTGCTG
ATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGTGCGGACT
ATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGCGAATCGC
GTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAACATTCTG
CAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTTGGCGTTC
CGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAGAAACTTA
TCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCTGAACACG
CTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACCAGCCTTA
CGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGGGGTCAGG
ATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACTCGGTCCG
GTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGGACGTGGG
CGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACTGAAAAAA
CTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAACGGATTT
CAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGACTGGCTA
CATAAAGTTAATATTCCAGGATAATCTAGATTAAATATAAATTTAATGGA
TTAACAAATGTATTTACGTCTATATAGATACTGTAGTAATTGAAAGATGT
CCAAGTTTGAAGCAGGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

LD40134.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pli.b 3012 Pli.b 65..1888 1..1824 9120 100 Plus
Pli.c 3036 Pli.c 65..1888 1..1824 9120 100 Plus
Pli.d 3428 Pli.d 792..2282 334..1824 7455 100 Plus
Pli.d 3428 Pli.d 22..358 1..337 1685 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19713116..19713451 337..1 1620 99.4 Minus
chr3R 27901430 chr3R 19686391..19686630 802..563 1185 99.6 Minus
chr3R 27901430 chr3R 19684707..19684919 1820..1608 1065 100 Minus
chr3R 27901430 chr3R 19685863..19686058 988..793 965 99.5 Minus
chr3R 27901430 chr3R 19685608..19685797 1176..987 950 100 Minus
chr3R 27901430 chr3R 19684991..19685169 1607..1429 880 99.4 Minus
chr3R 27901430 chr3R 19685228..19685383 1430..1275 750 98.7 Minus
chr3R 27901430 chr3R 19712481..19712617 470..334 685 100 Minus
chr3R 27901430 chr3R 19685445..19685544 1275..1176 485 99 Minus
chr3R 27901430 chr3R 19688980..19689073 563..470 470 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23889692..23890028 337..1 1685 100 Minus
3R 32079331 3R 23862976..23863215 802..563 1185 99.6 Minus
3R 32079331 3R 23861289..23861505 1824..1608 1085 100 Minus
3R 32079331 3R 23862449..23862644 988..793 980 100 Minus
3R 32079331 3R 23862194..23862383 1176..987 950 100 Minus
3R 32079331 3R 23861577..23861755 1607..1429 895 100 Minus
3R 32079331 3R 23861814..23861969 1430..1275 780 100 Minus
3R 32079331 3R 23889057..23889193 470..334 685 100 Minus
3R 32079331 3R 23862031..23862130 1275..1176 500 100 Minus
3R 32079331 3R 23865563..23865656 563..470 470 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23630523..23630859 337..1 1685 100 Minus
3R 31820162 3R 23603807..23604046 802..563 1185 99.5 Minus
3R 31820162 3R 23602120..23602336 1824..1608 1085 100 Minus
3R 31820162 3R 23603280..23603475 988..793 980 100 Minus
3R 31820162 3R 23603025..23603214 1176..987 950 100 Minus
3R 31820162 3R 23602408..23602586 1607..1429 895 100 Minus
3R 31820162 3R 23602645..23602800 1430..1275 780 100 Minus
3R 31820162 3R 23629888..23630024 470..334 685 100 Minus
3R 31820162 3R 23602862..23602961 1275..1176 500 100 Minus
3R 31820162 3R 23606394..23606487 563..470 470 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:07:40 has no hits.

LD40134.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:08:49 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19684707..19684919 1608..1820 100 <- Minus
chr3R 19684991..19685168 1430..1607 99 <- Minus
chr3R 19685229..19685382 1276..1429 98 <- Minus
chr3R 19685445..19685543 1177..1275 98 <- Minus
chr3R 19685608..19685796 988..1176 100 <- Minus
chr3R 19685864..19686055 796..987 99 <- Minus
chr3R 19686398..19686629 564..795 100 <- Minus
chr3R 19688980..19689072 471..563 100 <- Minus
chr3R 19712481..19712615 336..470 100 <- Minus
chr3R 19713118..19713451 1..335 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:38 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 1..1275 460..1734 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:11 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 1..1275 460..1734 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:18 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 1..1275 460..1734 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:31 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 1..1275 460..1734 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:31:12 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 1..1275 460..1734 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:37 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 48..1867 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:11 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 48..1867 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:18 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 25..1844 1..1820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:31 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 48..1867 1..1820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:31:12 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 25..1844 1..1820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:08:49 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23862450..23862641 796..987 100 <- Minus
3R 23862983..23863214 564..795 100 <- Minus
3R 23865563..23865655 471..563 100 <- Minus
3R 23889057..23889191 336..470 100 <- Minus
3R 23861293..23861505 1608..1820 100 <- Minus
3R 23861577..23861754 1430..1607 100 <- Minus
3R 23861815..23861968 1276..1429 100 <- Minus
3R 23862031..23862129 1177..1275 100 <- Minus
3R 23862194..23862382 988..1176 100 <- Minus
3R 23889694..23890028 1..335 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:08:49 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23862450..23862641 796..987 100 <- Minus
3R 23862983..23863214 564..795 100 <- Minus
3R 23865563..23865655 471..563 100 <- Minus
3R 23889057..23889191 336..470 100 <- Minus
3R 23861293..23861505 1608..1820 100 <- Minus
3R 23861577..23861754 1430..1607 100 <- Minus
3R 23861815..23861968 1276..1429 100 <- Minus
3R 23862031..23862129 1177..1275 100 <- Minus
3R 23862194..23862382 988..1176 100 <- Minus
3R 23889694..23890028 1..335 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:08:49 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23862450..23862641 796..987 100 <- Minus
3R 23862983..23863214 564..795 100 <- Minus
3R 23865563..23865655 471..563 100 <- Minus
3R 23889057..23889191 336..470 100 <- Minus
3R 23861293..23861505 1608..1820 100 <- Minus
3R 23861577..23861754 1430..1607 100 <- Minus
3R 23861815..23861968 1276..1429 100 <- Minus
3R 23862031..23862129 1177..1275 100 <- Minus
3R 23862194..23862382 988..1176 100 <- Minus
3R 23889694..23890028 1..335 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:18 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687015..19687227 1608..1820 100 <- Minus
arm_3R 19687299..19687476 1430..1607 100 <- Minus
arm_3R 19687537..19687690 1276..1429 100 <- Minus
arm_3R 19687753..19687851 1177..1275 100 <- Minus
arm_3R 19687916..19688104 988..1176 100 <- Minus
arm_3R 19688172..19688363 796..987 100 <- Minus
arm_3R 19688705..19688936 564..795 100 <- Minus
arm_3R 19691285..19691377 471..563 100 <- Minus
arm_3R 19714779..19714913 336..470 100 <- Minus
arm_3R 19715416..19715750 1..335 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:03 Download gff for LD40134.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23603281..23603472 796..987 100 <- Minus
3R 23602124..23602336 1608..1820 100 <- Minus
3R 23602408..23602585 1430..1607 100 <- Minus
3R 23602646..23602799 1276..1429 100 <- Minus
3R 23602862..23602960 1177..1275 100 <- Minus
3R 23603025..23603213 988..1176 100 <- Minus
3R 23603814..23604045 564..795 100 <- Minus
3R 23606394..23606486 471..563 100 <- Minus
3R 23629888..23630022 336..470 100 <- Minus
3R 23630525..23630859 1..335 100   Minus

LD40134.pep Sequence

Translation from 459 to 1733

> LD40134.pep
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLD*

LD40134.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18733-PA 424 GF18733-PA 1..424 1..424 2282 99.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12398-PA 424 GG12398-PA 1..424 1..424 2295 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10673-PA 424 GH10673-PA 1..424 1..424 2258 98.1 Plus
Dgri\GH23212-PA 128 GH23212-PA 1..109 5..113 568 96.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-PB 424 CG5212-PB 1..424 1..424 2283 100 Plus
Pli-PA 424 CG5212-PA 1..424 1..424 2283 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23056-PA 443 GI23056-PA 22..443 3..424 2252 98.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24265-PA 359 GL24265-PA 4..359 5..424 1582 73.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18740-PA 424 GA18740-PA 1..424 1..424 2266 98.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23534-PA 424 GM23534-PA 1..424 1..424 2295 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18346-PA 424 GD18346-PA 1..424 1..424 2295 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24639-PA 424 GJ24639-PA 1..424 1..424 2272 98.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11979-PA 424 GK11979-PA 1..424 1..424 2260 98.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23916-PA 424 GE23916-PA 1..424 1..424 2295 100 Plus

LD40134.hyp Sequence

Translation from 459 to 1733

> LD40134.hyp
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLD*

LD40134.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-PB 424 CG5212-PB 1..424 1..424 2283 100 Plus
Pli-PA 424 CG5212-PA 1..424 1..424 2283 100 Plus