Clone LD40136 Report

Search the DGRC for LD40136

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:36
Vector:pOT2
Associated Gene/TranscriptCG10657-RA
Protein status:LD40136.pep: gold
Preliminary Size:1568
Sequenced Size:1526

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10657 2001-01-01 Release 2 assignment
CG10657 2001-10-10 Blastp of sequenced clone
CG10657 2003-01-01 Sim4 clustering to Release 3
CG10657 2008-04-29 Release 5.5 accounting
CG10657 2008-08-15 Release 5.9 accounting
CG10657 2008-12-18 5.12 accounting

Clone Sequence Records

LD40136.complete Sequence

1526 bp (1526 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061455

> LD40136.complete
CGTGCCCACGTTCACATCGTCGCCAGTTCAGTTGCGGAACTCATACACGG
ATATATATACACATATATTCCGGCGATCAATTAGAGCCCCGGAATTCAGC
CACATCCCTCCCCTGCGACGCGTCCAAATATTGTTATATAAGTTTAACAA
CTTGTGAAATCCACGCAGTGCCAGTGCGTAAGACCAAAATGCTTGAGACC
GAGGTGCTGCAACAACCGAAGCTGAGTGGACCGGCTGCCAGTAGCGGCGG
CGACTATGACTATCCGTATGTCTGCGGACTGAGTCCGGCAATGAAGCTGG
TGGCCAAGGAGGAGCTGCACGAGGACGAGAACATACGTCGGCAGGCGCTG
GCCCAGTTCCGCGAGTGGATCGAGAAGCATCCGCATATCCGCAAGTGCCG
CACCGATACCGTCTTCCTGCTGCGTTTTTTGCGCACCAAAAAGTTCTCCG
TACCATCCGCCTGCGAAATGCTCGAGCGCTATCTGACCATCCGGCAGCTG
TTCCCGCAGTGGTTCAAGCAGCTGGACATCAACGATCCGGCCATCAATGA
GATCTTCGAGAATGGTTATCTGGTGCCGCTGCCGCAGCGCGATTCCACCG
GACGTCAGGTCATCTTCTCCGTGGCCGCCAAGTTCGATCCGTACAAGTTC
ACTTCGGTGCAAATGGCGCGGGTGCACAGTCTGGTCTGCGAGGCACTGCT
GGATGATGAGGATTCTCAGGTGGCTGGATATGTGTACATCAACGACGAGA
GTGGCATGAACATGGGCTTCGTTAGCCTCTGGTCTCTGACCGACCTGCGC
AGCATTGTCAAGTGCATCCAGAACTCGACGCCGATGCGGCACAAGGAGAC
GCACTTCGTCAACATACCCCACTACGCCAATCGCATCATCGAGCTGGGCG
TGTCCATGCTGAGCGATAAGCTTAAGAAGCGAATCATTGTGCACAAGAAT
GTTGACATTTTGAAGACAAAGATCGATCCCGCCATCCTGCCCAAGGAATA
TGGTGGCACCGTGCCCATTGCCGATATGATCGCCCAGTTCAAACAGAAGT
TGCAGCAACGCCGGGCGGCAATCCTTGCACTCGACGACATGCAGATCGAG
GTGACCAAGGATGCGGCCAATTTTGCTGGTAATGATATCGGCGACATCGA
TGCCGGTGTCGTGGGCAGTTTTAGGAAACTGGAGGTGGACTAGAGCCCGC
CGTGGAGCAATCCCCTTAATCCCGTAGGCTAAGCTAGGCTAGGTCTGGAT
ACCATTGAGACAATCGACAAGACGCGCGGGCATGCACACTTCGTACCTAT
TTAAAAGCATCACCACTAAGTTGTATAACTACGGTCTCGCGGGAACTGTG
ACTCCCTCCAGTGGGTCGTGGTCCTCCAATCCTCAGAATCCCATAGTTGC
TGGGCCTGTGGCTGAGTTTCCACAGTTGTATATTCCATCCATGCGTTACG
TTATCTTAAATGAATGTCTATTTAAATATATGTATATACTTATTCTTGAG
AATTTTAAAAAAAAAAAAAAAAAAAA

LD40136.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-RA 1554 CG10657-RA 23..1530 1..1508 7540 100 Plus
CG10657.a 1512 CG10657.a 187..1506 189..1508 6600 100 Plus
CG10657.a 1512 CG10657.a 15..187 1..173 865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12482449..12483016 1506..939 2795 99.5 Minus
chr3L 24539361 chr3L 12483434..12483895 651..190 2235 98.9 Minus
chr3L 24539361 chr3L 12483079..12483374 941..646 1450 99.3 Minus
chr3L 24539361 chr3L 12487626..12487814 189..1 945 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12491828..12492397 1508..939 2850 100 Minus
3L 28110227 3L 12492813..12493274 651..190 2295 99.8 Minus
3L 28110227 3L 12492458..12492753 941..646 1480 100 Minus
3L 28110227 3L 12497010..12497198 189..1 945 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12484928..12485497 1508..939 2850 100 Minus
3L 28103327 3L 12485913..12486374 651..190 2295 99.7 Minus
3L 28103327 3L 12485558..12485853 941..646 1480 100 Minus
3L 28103327 3L 12490110..12490298 189..1 945 100 Minus
Blast to na_te.dros performed 2019-03-16 16:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 419..455 1493..1457 113 78.4 Minus

LD40136.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:11 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12482449..12483016 939..1506 99 <- Minus
chr3L 12483082..12483372 648..938 99 <- Minus
chr3L 12483438..12483895 190..647 99 <- Minus
chr3L 12487626..12487814 1..189 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:26 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 189..1193 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:42 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 189..1193 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:13 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 189..1193 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:43 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 189..1193 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:45 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 189..1193 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:38:57 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1506 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:42 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1506 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:13 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 19..1524 1..1506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:43 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1506 1..1506 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:45 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 19..1524 1..1506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:11 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12491830..12492397 939..1506 100 <- Minus
3L 12492461..12492751 648..938 100 <- Minus
3L 12492817..12493274 190..647 100 <- Minus
3L 12497010..12497198 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:11 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12491830..12492397 939..1506 100 <- Minus
3L 12492461..12492751 648..938 100 <- Minus
3L 12492817..12493274 190..647 100 <- Minus
3L 12497010..12497198 1..189 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:11 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12491830..12492397 939..1506 100 <- Minus
3L 12492461..12492751 648..938 100 <- Minus
3L 12492817..12493274 190..647 100 <- Minus
3L 12497010..12497198 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:13 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12484930..12485497 939..1506 100 <- Minus
arm_3L 12485561..12485851 648..938 100 <- Minus
arm_3L 12485917..12486374 190..647 100 <- Minus
arm_3L 12490110..12490298 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:50 Download gff for LD40136.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12484930..12485497 939..1506 100 <- Minus
3L 12485561..12485851 648..938 100 <- Minus
3L 12485917..12486374 190..647 100 <- Minus
3L 12490110..12490298 1..189 100   Minus

LD40136.hyp Sequence

Translation from 2 to 1192

> LD40136.hyp
CPRSHRRQFSCGTHTRIYIHIYSGDQLEPRNSATSLPCDASKYCYISLTT
CEIHAVPVRKTKMLETEVLQQPKLSGPAASSGGDYDYPYVCGLSPAMKLV
AKEELHEDENIRRQALAQFREWIEKHPHIRKCRTDTVFLLRFLRTKKFSV
PSACEMLERYLTIRQLFPQWFKQLDINDPAINEIFENGYLVPLPQRDSTG
RQVIFSVAAKFDPYKFTSVQMARVHSLVCEALLDDEDSQVAGYVYINDES
GMNMGFVSLWSLTDLRSIVKCIQNSTPMRHKETHFVNIPHYANRIIELGV
SMLSDKLKKRIIVHKNVDILKTKIDPAILPKEYGGTVPIADMIAQFKQKL
QQRRAAILALDDMQIEVTKDAANFAGNDIGDIDAGVVGSFRKLEVD*

LD40136.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-PA 334 CG10657-PA 1..334 63..396 1728 100 Plus
Cralbp-PA 324 CG10546-PA 10..324 92..396 550 36.8 Plus
CG30339-PA 308 CG30339-PA 7..308 93..396 323 30.8 Plus
CG33966-PA 310 CG33966-PA 2..310 88..396 307 29.8 Plus
CG33514-PA 311 CG33514-PA 3..311 88..396 307 28.9 Plus

LD40136.pep Sequence

Translation from 188 to 1192

> LD40136.pep
MLETEVLQQPKLSGPAASSGGDYDYPYVCGLSPAMKLVAKEELHEDENIR
RQALAQFREWIEKHPHIRKCRTDTVFLLRFLRTKKFSVPSACEMLERYLT
IRQLFPQWFKQLDINDPAINEIFENGYLVPLPQRDSTGRQVIFSVAAKFD
PYKFTSVQMARVHSLVCEALLDDEDSQVAGYVYINDESGMNMGFVSLWSL
TDLRSIVKCIQNSTPMRHKETHFVNIPHYANRIIELGVSMLSDKLKKRII
VHKNVDILKTKIDPAILPKEYGGTVPIADMIAQFKQKLQQRRAAILALDD
MQIEVTKDAANFAGNDIGDIDAGVVGSFRKLEVD*

LD40136.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24015-PA 337 GF24015-PA 4..337 1..334 1737 95.2 Plus
Dana\GF10445-PA 324 GF10445-PA 18..324 38..334 562 37.8 Plus
Dana\GF12490-PA 308 GF12490-PA 7..308 31..334 352 30.9 Plus
Dana\GF12489-PA 311 GF12489-PA 10..311 31..334 337 28.9 Plus
Dana\GF15442-PA 313 GF15442-PA 7..313 31..334 328 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13826-PA 355 GG13826-PA 22..355 1..334 1771 98.2 Plus
Dere\GG14112-PA 324 GG14112-PA 4..324 24..334 552 36.4 Plus
Dere\GG25272-PA 308 GG25272-PA 7..308 31..334 331 30.5 Plus
Dere\GG25270-PA 313 GG25270-PA 12..313 31..334 310 27.7 Plus
Dere\GG23602-PA 313 GG23602-PA 7..313 31..334 302 29.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16061-PA 335 GH16061-PA 4..335 1..334 1493 80.8 Plus
Dgri\GH15231-PA 327 GH15231-PA 12..327 28..334 563 36.9 Plus
Dgri\GH22857-PA 310 GH22857-PA 9..310 31..334 372 32.7 Plus
Dgri\GH13581-PA 314 GH13581-PA 9..314 31..334 316 30.4 Plus
Dgri\GH15199-PA 308 GH15199-PA 3..308 26..334 304 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-PA 334 CG10657-PA 1..334 1..334 1728 100 Plus
Cralbp-PA 324 CG10546-PA 10..324 30..334 550 36.8 Plus
CG30339-PA 308 CG30339-PA 7..308 31..334 323 30.8 Plus
CG33966-PA 310 CG33966-PA 2..310 26..334 307 29.8 Plus
CG33514-PA 311 CG33514-PA 3..311 26..334 307 28.9 Plus
CG12926-PA 313 CG12926-PA 12..313 31..334 307 27.7 Plus
CG33965-PA 317 CG33965-PA 12..317 31..334 295 28.7 Plus
CG31636-PB 313 CG31636-PB 7..313 31..334 294 29.5 Plus
CG31636-PA 313 CG31636-PA 7..313 31..334 294 29.5 Plus
CG2663-PC 308 CG2663-PC 7..308 32..334 289 27.1 Plus
CG2663-PA 308 CG2663-PA 7..308 32..334 289 27.1 Plus
CG10300-PA 311 CG10300-PA 8..311 31..334 274 24.7 Plus
CG5958-PA 294 CG5958-PA 18..266 31..279 256 30.2 Plus
CG3823-PA 295 CG3823-PA 9..295 46..334 238 23.9 Plus
CG11550-PA 298 CG11550-PA 16..298 49..334 237 25.8 Plus
CG10301-PB 306 CG10301-PB 5..248 31..274 224 27.6 Plus
CG10237-PD 301 CG10237-PD 14..267 21..273 222 27.1 Plus
CG10237-PA 301 CG10237-PA 14..267 21..273 222 27.1 Plus
CG10237-PE 306 CG10237-PE 19..272 21..273 222 27.1 Plus
CG10237-PC 306 CG10237-PC 19..272 21..273 222 27.1 Plus
CG10237-PB 324 CG10237-PB 37..290 21..273 222 27.1 Plus
CG5973-PF 311 CG5973-PF 39..273 39..274 207 26.1 Plus
CG5973-PE 311 CG5973-PE 39..273 39..274 207 26.1 Plus
CG5973-PG 311 CG5973-PG 39..273 39..274 207 26.1 Plus
CG5973-PD 311 CG5973-PD 39..273 39..274 207 26.1 Plus
CG5973-PC 311 CG5973-PC 39..273 39..274 207 26.1 Plus
CG5973-PB 311 CG5973-PB 39..273 39..274 207 26.1 Plus
CG5973-PA 311 CG5973-PA 39..273 39..274 207 26.1 Plus
CG3191-PC 309 CG3191-PC 28..277 46..287 188 24.7 Plus
CG3191-PA 309 CG3191-PA 28..277 46..287 188 24.7 Plus
CG3091-PC 303 CG3091-PC 32..272 60..287 187 24.9 Plus
CG3091-PA 303 CG3091-PA 32..272 60..287 187 24.9 Plus
pinta-PB 273 CG13848-PB 8..257 39..290 170 23.7 Plus
pinta-PA 273 CG13848-PA 8..257 39..290 170 23.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12324-PA 353 GI12324-PA 22..353 1..334 1582 87.1 Plus
Dmoj\GI11941-PA 327 GI11941-PA 15..327 31..334 544 35.8 Plus
Dmoj\GI16717-PA 308 GI16717-PA 3..308 26..334 341 33.1 Plus
Dmoj\GI24205-PA 314 GI24205-PA 9..314 31..334 313 29.9 Plus
Dmoj\GI21234-PA 308 GI21234-PA 7..308 31..334 305 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24950-PA 319 GL24950-PA 2..319 18..334 1581 91.8 Plus
Dper\GL16313-PA 325 GL16313-PA 10..325 28..334 555 36.4 Plus
Dper\GL26205-PA 313 GL26205-PA 7..313 31..334 323 30.9 Plus
Dper\GL17331-PA 308 GL17331-PA 7..308 31..334 316 29.3 Plus
Dper\GL17330-PA 311 GL17330-PA 10..311 31..334 311 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23570-PA 319 GA23570-PA 2..319 18..334 1615 93.4 Plus
Dpse\GA10388-PA 325 GA10388-PA 10..325 28..334 555 36.4 Plus
Dpse\GA16352-PA 313 GA16352-PA 7..313 31..334 323 30.9 Plus
Dpse\GA15770-PA 308 GA15770-PA 7..308 31..334 319 29.3 Plus
Dpse\GA11913-PA 311 GA11913-PA 10..311 31..334 310 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24651-PA 337 GM24651-PA 4..337 1..334 1789 99.1 Plus
Dsec\GM13897-PA 324 GM13897-PA 4..324 24..334 558 36.8 Plus
Dsec\GM20589-PA 308 GM20589-PA 7..308 31..334 331 29.9 Plus
Dsec\GM14655-PA 311 GM14655-PA 3..311 26..334 308 29.4 Plus
Dsec\GM20588-PA 313 GM20588-PA 9..313 28..334 306 27.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12715-PA 95 GD12715-PA 1..95 240..334 485 100 Plus
Dsim\GD10061-PA 308 GD10061-PA 7..308 31..334 334 30.2 Plus
Dsim\GD13840-PA 311 GD13840-PA 3..311 26..334 307 29.1 Plus
Dsim\GD22558-PA 313 GD22558-PA 7..313 31..334 292 28.8 Plus
Dsim\GD19620-PA 308 GD19620-PA 7..308 32..334 281 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13262-PA 354 GJ13262-PA 23..354 1..334 1579 87.4 Plus
Dvir\GJ12167-PA 327 GJ12167-PA 12..327 28..334 540 35.4 Plus
Dvir\GJ20839-PA 312 GJ20839-PA 7..312 27..334 369 32.8 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 3..308 26..334 326 30.9 Plus
Dvir\GJ21474-PA 314 GJ21474-PA 9..314 31..334 321 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12625-PA 358 GK12625-PA 24..358 1..334 1665 92.2 Plus
Dwil\GK17295-PA 328 GK17295-PA 16..328 31..334 554 36.6 Plus
Dwil\GK15623-PA 309 GK15623-PA 8..309 31..334 338 31.2 Plus
Dwil\GK11682-PA 311 GK11682-PA 8..311 31..334 318 30.8 Plus
Dwil\GK15622-PA 313 GK15622-PA 12..313 31..334 306 27.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20117-PA 342 GE20117-PA 9..342 1..334 1757 97.3 Plus
Dyak\GE20536-PA 324 GE20536-PA 11..324 31..334 558 36.9 Plus
Dyak\GE22159-PA 308 GE22159-PA 7..308 31..334 338 31.5 Plus
Dyak\GE21128-PA 317 GE21128-PA 1..317 12..334 313 28.5 Plus
Dyak\GE22148-PA 313 GE22148-PA 12..313 31..334 309 27.7 Plus