Clone LD40170 Report

Search the DGRC for LD40170

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:70
Vector:pOT2
Associated Gene/TranscriptAtxn7-RA
Protein status:LD40170.pep: gold
Preliminary Size:3322
Sequenced Size:3583

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9866 2001-01-01 Release 2 assignment
CG9866 2002-05-31 Blastp of sequenced clone
CG9866 2003-01-01 Sim4 clustering to Release 3
CG9866 2008-04-29 Release 5.5 accounting
CG9866 2008-08-15 Release 5.9 accounting
CG9866 2008-12-18 5.12 accounting

Clone Sequence Records

LD40170.complete Sequence

3583 bp (3583 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118567

> LD40170.complete
CCATCCCTAAGCAAATACAACGATATTCATAATATCAATCTTTAAACTCG
AAAAAGCGAGACAAACTAGAAAGCTTTAATTGATTTCGTTACAGAATCAA
TTAGGCTATACAACCAACTCGTCTTTTTCGAGTTGACCTGGCATTTTCCT
CCACGGAGGCCGGCCAAAAATCCGATTTATCCACGGGTAGGGTAGAACGG
TAACCTAAACCCACAAAAAAAACAACAAAACATGGAAGTGTGTTAACGAC
GTGCTTTAAGGGGCAATTTTGCTCGAGTGTACCGAATCCCCGGATCCCGC
GAGCACAGCTTCTATCCGGAATGCCCCTGAACGATGTGGCCCCCGCCGGT
GGTGGAGCTTATCCGGAAAATGGAACCAAGCACAAGGTGTCGGGAATGTG
GAAGCCGGACTCGTCGGCCGGCTCCAATTCCGGCTCGGGATCGGCGGGAC
TATCCCTGTTTAGCCTGCAGGGCCAAAAGTGGCAGCAGGTCTTCGACATG
GAAAAGGTCATCAAGCAACTGCGAACGGCTGAGAAGACGTATCTGCGTGG
TGGAAAGAACTCCTCCGCCGGCGCAGATCAACAGGCGAAGGTGCAGGTCC
AGCGTCTGCAATCGGCGGACATGGCCTACTACGATCTGGCGCCGAAGCTG
GCCAGTCGCGATATAGTACTCTGTAGTTCCTGCTCGGGATGTTACACGAA
GGCAGGTTTCCAGCACCACATTGCGCTGCAGCATCCTAGCGTCTGGGAGG
CCACATCCAGCAAAGTGAATCCCAATCCAAATGGGACAGCCATATCCAGC
GACTCTCGTCTCACTGCCACGGAAATCAGTCAGGAGGGCGGGGCTATCGT
GCCAAGTTCGCCCACGGATACGCTTTCGGCCTCGACGCTCTCCAGTTGCT
CGAACGGGTCCAGCAGCTCGGCTTCACTGCAGCATCCGGCTGCTGCGGGT
TCATCCAGCACCACGTCGTCTTCGTCTTCGTCGCGTCACAAGAGCAGCAG
CAGTAAAAGTAGCAGTTCCTCCTCGTCTAAGGGCAGCAGCAGCACTTCCG
CCGGAAGTAGGTCGCGTTCGAAGTCGTCAAAGAACCGCCACCACTCCTCG
CCAGCTCCGGCCCTGCTGGAGTCCAATCACAAGGAGTCAAAGGGATCGAA
GAAGAGTTCGGCCATAGCCGCTCCTCCCGTCGTCGCTGCTGTTGTTAAGG
AGGAGCCACCATCTGTGGGTGCTGCTCCGGCTGCCATAACCATGTTCTCC
TCCTCCAGCAACTCATCCTGCAGCTTACCGCCCACTCCCACGTTGGGAGC
GGCCTCCAGCGAGGTGGCGATGGGGGTCAACTATTCACCTGCCCAGCTTC
AGACGGATGCGGAAAAGCTGCCCGAGCTGCAGCCAAAGAAAAAGTTGAAG
GGCTCCAGCGATCATCGAATAAAAGCGGAAAAGGAGAAGAACAAAGATAA
GTCTCTGGTGAATTCCTACGAGCAGCAGCAAGTGCTCAGCGAACTGGACC
AGGCAGTGTCTTCCATCACGGGAGCGGTTTCCGCCGAGCAGGTGGCGCCC
GATGAGGAGGAACTGCCCTTGCCCAACACCTCCGACGAGAACTCCATTTC
GCAGACGCTCGACGAAATGCTGGACAGCAAGCTGATCAACGAGATTCTGA
ATAACTTCGATGAGAGCGCTCTGGACACATCGCAACAGCAGTCACAACAG
CAAGCGCAGAATGGATCGCTATCGCATCCCGCACAGGCCACTAAAAGGCT
GCGCTTTGAGGACGGAACCATTGGCGAGGATTACGCCGTGTACCAGCAGC
AGGCGGTTCAGCAGGTTTATGGCGAGGAAGAGCATCAGCAGGAGCTGACC
ACCATCGATGCCATGCAGTTGCAGCAACTGATTTACCAGCAGCAGCAGAT
GCTCGAGCAGCAGCAACTGCAAGAGCAGCAGCAACAGCAGCAGCAGGATC
AGAAGCTTCAGGATCACGAGCAGCAGCGCCAGTTCAGCGTCTACAACGTG
CCGTCTCTGACGGATGAGGCAATGGTCAATCCACAGCAACAGCAGCTGGA
GGAGCACATGATCCTGCCCAGTATTATATACGAGATCACCGAGTCGAATC
CCGTTTCCATGCTGGAGCAGAAGGTCTTAGCCGAATTCCTAACCAACGCG
GGCTACGAAAATGTGGACGTGAATGTCGTGCAATCGGGCGGCATACAAAC
CAACTTGAGTTCTGGAACGGAGGCAAACCAACTGGCGGATGAACTGGCCG
ACTTTGAGTTCAGTAAACTGGAGACTGTTAGCGACACCGTAAAGACTGTT
AAGCTGGAGGCCAAGGCCGCCAGCCAGCCACCCACAACAAATCCTCAAAT
CAATCACCATCCATCGCTGGCCAATGCCAAATACCACGAGGACAGCTACT
TTAACGTGATGCTGTACTCCGGAGCGCCTCGTCCCTTGGCCATGAACACG
TTTGGCATGGTGAAGTTGCCCCAGGGCCTGGGCGTCACCTTCCGCAAGAA
TCTGTTGACCACGCGGAAGGCGAACAACAATTTGCTATCCCTGTCGGGAG
GTAATCACCTGGGCGTGGTCGGTCAGCTGGCCCGCACACCGCCGCCGCCC
TCGCCAGCGTTAAGCAACGGTCTGCCGGGTAAGAATCCCGCCTCGGGCAG
AACCATTTACGCTCAGCGATCGAATGTCATTGCACAAGATCGCCTGAGGT
GCAATAAGAGGGCGCTGGTAGGAGGAAAAGCTGGTGGTGGATCAAGCGGA
TCGCCGGGAGTCATGACAGCCAAGCGTTTGAATGAACTGCTAATGGGAAA
GGCGAAGAAGGAGGAGAAGCCACCACCGGATAGCGAGGATGGCGGCGAGC
AGCCGACGAAGGACAAGGAACGCGACAAGGAGGAGGACAACAAGCTGACC
TTCAGTTTCTACGAGAAACGCCGCCGACTGTTGGCCGGCAAGCTGGAGCA
GCTGCAGCCCCTCGGCCGCCCCAGCTTCACCCTGCCGCTCCAGAGCAACC
ACAACGCCAGCCAAAGTCAGAGCCACTCGCCACAGCAGCTCCTCAAAAAG
CAGCTGCTGCGCACCTTGTCCGACAGCAGCAGCAACATGAACATCAGCAA
CATGAACAACATCAGCAATTTGAACAGCAGCAACACTCCCAGCGCCAACA
GCAATCCTCCCTGGAAGGGGAACAGTTCCAATCCGGGAGGCAACTCCACT
CCAACCAGCAGCGACTTGATGCGCGTCTTCGTCTGATCTGAACCGATGGG
GAAGGTCAGATGTGCGGACACGCATCCCTAGTTATATGTTTATACAATAC
CATGCTATTATGTGCAGCCTCTTCTCTAATGCTAAATTAAATTGTAATAA
TTTTTTAAATTAATTCTTCATTTTTTAAAAGTGATAATTATCTTTTAGTT
ATCTATTAGTTGATTGTATGTAATTCTTTGTTTATTCTAATTAATTTAAC
AATTATACATATTATTTTTCGTGGCTAAGCATTATGCTAGGTACTCGTAA
ATCATTATTTATACACGCTGTAAACTTTTTAAATACAAGAGCATGCCTAA
GTTCAATTATACTCCAAAAAAAAAAAAAAAAAA

LD40170.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9866-RA 3633 CG9866-RA 48..3613 1..3566 17830 100 Plus
CG9866-RB 3415 CG9866-RB 93..3408 251..3566 16580 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2378031..2380203 1393..3565 10535 99 Plus
chr2L 23010047 chr2L 2376829..2377972 251..1394 5675 99.7 Plus
chr2L 23010047 chr2L 2375590..2375842 1..252 1200 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2378334..2380507 1393..3566 10870 100 Plus
2L 23513712 2L 2377132..2378275 251..1394 5720 100 Plus
2L 23513712 2L 2375894..2376145 1..252 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2378334..2380507 1393..3566 10870 100 Plus
2L 23513712 2L 2377132..2378275 251..1394 5720 100 Plus
2L 23513712 2L 2375894..2376145 1..252 1260 100 Plus
Blast to na_te.dros performed 2019-03-16 16:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6908 1825..1997 276 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6882 988..1044 123 68.4 Plus

LD40170.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:13 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2375590..2375840 1..250 99 -> Plus
chr2L 2376829..2377972 251..1394 99 -> Plus
chr2L 2378033..2378502 1395..1864 98 == Plus
chr2L 2378591..2379708 1953..3070 98 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:27 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 1..2916 321..3236 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:57 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 1..2916 321..3236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:16 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 1..2916 321..3236 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:27 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RB 1..2916 321..3236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:47 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
Atxn7-RB 1..2916 321..3236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:57 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RA 1..3565 1..3565 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:57 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RA 1..3565 1..3565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:16 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RA 54..3618 1..3565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:27 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
CG9866-RA 1..3565 1..3565 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:47 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
Atxn7-RA 54..3618 1..3565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:13 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2378336..2380506 1395..3565 100   Plus
2L 2375894..2376143 1..250 100 -> Plus
2L 2377132..2378275 251..1394 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:13 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2378336..2380506 1395..3565 100   Plus
2L 2375894..2376143 1..250 100 -> Plus
2L 2377132..2378275 251..1394 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:13 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2378336..2380506 1395..3565 100   Plus
2L 2375894..2376143 1..250 100 -> Plus
2L 2377132..2378275 251..1394 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:16 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2375894..2376143 1..250 100 -> Plus
arm_2L 2377132..2378275 251..1394 100 -> Plus
arm_2L 2378336..2380506 1395..3565 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:56 Download gff for LD40170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2375894..2376143 1..250 100 -> Plus
2L 2377132..2378275 251..1394 100 -> Plus
2L 2378336..2380506 1395..3565 100   Plus

LD40170.pep Sequence

Translation from 320 to 3235

> LD40170.pep
MPLNDVAPAGGGAYPENGTKHKVSGMWKPDSSAGSNSGSGSAGLSLFSLQ
GQKWQQVFDMEKVIKQLRTAEKTYLRGGKNSSAGADQQAKVQVQRLQSAD
MAYYDLAPKLASRDIVLCSSCSGCYTKAGFQHHIALQHPSVWEATSSKVN
PNPNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSS
ASLQHPAAAGSSSTTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRS
KSSKNRHHSSPAPALLESNHKESKGSKKSSAIAAPPVVAAVVKEEPPSVG
AAPAAITMFSSSSNSSCSLPPTPTLGAASSEVAMGVNYSPAQLQTDAEKL
PELQPKKKLKGSSDHRIKAEKEKNKDKSLVNSYEQQQVLSELDQAVSSIT
GAVSAEQVAPDEEELPLPNTSDENSISQTLDEMLDSKLINEILNNFDESA
LDTSQQQSQQQAQNGSLSHPAQATKRLRFEDGTIGEDYAVYQQQAVQQVY
GEEEHQQELTTIDAMQLQQLIYQQQQMLEQQQLQEQQQQQQQDQKLQDHE
QQRQFSVYNVPSLTDEAMVNPQQQQLEEHMILPSIIYEITESNPVSMLEQ
KVLAEFLTNAGYENVDVNVVQSGGIQTNLSSGTEANQLADELADFEFSKL
ETVSDTVKTVKLEAKAASQPPTTNPQINHHPSLANAKYHEDSYFNVMLYS
GAPRPLAMNTFGMVKLPQGLGVTFRKNLLTTRKANNNLLSLSGGNHLGVV
GQLARTPPPPSPALSNGLPGKNPASGRTIYAQRSNVIAQDRLRCNKRALV
GGKAGGGSSGSPGVMTAKRLNELLMGKAKKEEKPPPDSEDGGEQPTKDKE
RDKEEDNKLTFSFYEKRRRLLAGKLEQLQPLGRPSFTLPLQSNHNASQSQ
SHSPQQLLKKQLLRTLSDSSSNMNISNMNNISNLNSSNTPSANSNPPWKG
NSSNPGGNSTPTSSDLMRVFV*

LD40170.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14622-PA 1013 GF14622-PA 1..1012 1..970 2650 70.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24852-PA 964 GG24852-PA 1..964 1..971 4910 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11508-PA 1070 GH11508-PA 257..1070 257..971 1000 44.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-PD 971 CG9866-PD 1..971 1..971 4914 100 Plus
Atxn7-PC 971 CG9866-PC 1..971 1..971 4914 100 Plus
Atxn7-PB 971 CG9866-PB 1..971 1..971 4914 100 Plus
Atxn7-PA 971 CG9866-PA 1..971 1..971 4914 100 Plus
sr-PE 906 CG7847-PE 44..429 157..556 209 22.9 Plus
sr-PB 906 CG7847-PB 44..429 157..556 209 22.9 Plus
sr-PA 1186 CG7847-PA 324..709 157..556 209 22.9 Plus
sr-PD 1271 CG7847-PD 324..709 157..556 209 22.9 Plus
Muc68D-PB 1514 CG6004-PB 401..930 137..682 197 22.4 Plus
Muc68D-PB 1514 CG6004-PB 373..874 143..673 193 21.8 Plus
Hr4-PC 1518 CG43934-PC 49..588 110..586 188 23.8 Plus
Hr4-PD 1529 CG43934-PD 59..598 110..586 188 23.8 Plus
Hr4-PF 1611 CG43934-PF 142..681 110..586 188 23.8 Plus
Hr4-PE 1842 CG43934-PE 373..912 110..586 188 23.8 Plus
Hr4-PK 1843 CG43934-PK 373..912 110..586 188 23.8 Plus
Hr4-PJ 1843 CG43934-PJ 373..912 110..586 188 23.8 Plus
Hr4-PH 1863 CG43934-PH 49..588 110..586 188 23.8 Plus
Hr4-PG 1986 CG43934-PG 516..1055 110..586 188 23.8 Plus
Hr4-PI 2123 CG43934-PI 49..588 110..586 188 23.8 Plus
PNUTS-PA 628 CG33526-PA 305..538 202..422 183 28.9 Plus
PNUTS-PB 628 CG33526-PB 305..538 202..422 183 28.9 Plus
PNUTS-PE 1135 CG33526-PE 305..538 202..422 183 28.9 Plus
PNUTS-PD 1135 CG33526-PD 305..538 202..422 183 28.9 Plus
Muc68D-PB 1514 CG6004-PB 604..951 137..470 180 24.1 Plus
CG30389-PD 980 CG30389-PD 261..686 132..578 178 21.1 Plus
CG30389-PC 980 CG30389-PC 261..686 132..578 178 21.1 Plus
CG30389-PA 980 CG30389-PA 261..686 132..578 178 21.1 Plus
CG30389-PF 1009 CG30389-PF 261..686 132..578 178 21.1 Plus
CG5756-PC 1220 CG5756-PC 712..1108 180..578 177 22.7 Plus
ctrip-PL 2901 CG42574-PL 219..709 173..610 170 23.8 Plus
ctrip-PJ 2929 CG42574-PJ 219..704 173..605 170 23.8 Plus
ctrip-PE 2930 CG42574-PE 219..676 173..575 169 24.3 Plus
Eip74EF-PD 883 CG32180-PD 10..378 191..553 168 22.3 Plus
Eip74EF-PB 883 CG32180-PB 10..378 191..553 168 22.3 Plus
CG43347-PD 2652 CG43347-PD 33..391 194..508 167 25.3 Plus
CG43347-PB 2666 CG43347-PB 33..391 194..508 167 25.3 Plus
CG43347-PC 2684 CG43347-PC 33..391 194..508 167 25.3 Plus
Pcf11-PF 1850 CG10228-PF 314..745 131..539 164 20.5 Plus
CG44085-PH 756 CG44085-PH 110..451 206..575 163 24.6 Plus
CG44085-PL 833 CG44085-PL 187..528 206..575 163 24.6 Plus
CG44085-PI 833 CG44085-PI 187..528 206..575 163 24.6 Plus
CG44085-PC 836 CG44085-PC 187..528 206..575 163 24.6 Plus
CG44085-PF 902 CG44085-PF 110..451 206..575 163 24.6 Plus
CG44085-PD 918 CG44085-PD 110..451 206..575 163 24.6 Plus
CG44085-PG 942 CG44085-PG 110..451 206..575 163 24.6 Plus
CG44085-PK 979 CG44085-PK 187..528 206..575 163 24.6 Plus
CG44085-PJ 979 CG44085-PJ 187..528 206..575 163 24.6 Plus
CG44085-PN 1007 CG44085-PN 187..528 206..575 163 24.6 Plus
CG44085-PM 864 CG44085-PM 302..413 455..575 161 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17004-PA 1063 GI17004-PA 69..1063 45..971 1488 49.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18724-PA 841 GL18724-PA 62..841 255..971 1415 55.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22084-PA 1028 GA22084-PA 1..1028 1..971 1882 56 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18335-PA 971 GM18335-PA 1..971 1..971 5042 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23150-PA 725 GD23150-PA 1..601 1..601 3102 99 Plus
Dsim\GD23150-PA 725 GD23150-PA 601..725 847..971 666 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24292-PA 1071 GJ24292-PA 33..1071 44..971 1479 47.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15154-PA 1051 GK15154-PA 271..1051 257..971 1276 49.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18150-PA 972 GE18150-PA 1..972 1..971 4968 96.4 Plus

LD40170.hyp Sequence

Translation from 320 to 3235

> LD40170.hyp
MPLNDVAPAGGGAYPENGTKHKVSGMWKPDSSAGSNSGSGSAGLSLFSLQ
GQKWQQVFDMEKVIKQLRTAEKTYLRGGKNSSAGADQQAKVQVQRLQSAD
MAYYDLAPKLASRDIVLCSSCSGCYTKAGFQHHIALQHPSVWEATSSKVN
PNPNGTAISSDSRLTATEISQEGGAIVPSSPTDTLSASTLSSCSNGSSSS
ASLQHPAAAGSSSTTSSSSSSRHKSSSSKSSSSSSSKGSSSTSAGSRSRS
KSSKNRHHSSPAPALLESNHKESKGSKKSSAIAAPPVVAAVVKEEPPSVG
AAPAAITMFSSSSNSSCSLPPTPTLGAASSEVAMGVNYSPAQLQTDAEKL
PELQPKKKLKGSSDHRIKAEKEKNKDKSLVNSYEQQQVLSELDQAVSSIT
GAVSAEQVAPDEEELPLPNTSDENSISQTLDEMLDSKLINEILNNFDESA
LDTSQQQSQQQAQNGSLSHPAQATKRLRFEDGTIGEDYAVYQQQAVQQVY
GEEEHQQELTTIDAMQLQQLIYQQQQMLEQQQLQEQQQQQQQDQKLQDHE
QQRQFSVYNVPSLTDEAMVNPQQQQLEEHMILPSIIYEITESNPVSMLEQ
KVLAEFLTNAGYENVDVNVVQSGGIQTNLSSGTEANQLADELADFEFSKL
ETVSDTVKTVKLEAKAASQPPTTNPQINHHPSLANAKYHEDSYFNVMLYS
GAPRPLAMNTFGMVKLPQGLGVTFRKNLLTTRKANNNLLSLSGGNHLGVV
GQLARTPPPPSPALSNGLPGKNPASGRTIYAQRSNVIAQDRLRCNKRALV
GGKAGGGSSGSPGVMTAKRLNELLMGKAKKEEKPPPDSEDGGEQPTKDKE
RDKEEDNKLTFSFYEKRRRLLAGKLEQLQPLGRPSFTLPLQSNHNASQSQ
SHSPQQLLKKQLLRTLSDSSSNMNISNMNNISNLNSSNTPSANSNPPWKG
NSSNPGGNSTPTSSDLMRVFV*

LD40170.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Atxn7-PD 971 CG9866-PD 1..971 1..971 4914 100 Plus
Atxn7-PC 971 CG9866-PC 1..971 1..971 4914 100 Plus
Atxn7-PB 971 CG9866-PB 1..971 1..971 4914 100 Plus
Atxn7-PA 971 CG9866-PA 1..971 1..971 4914 100 Plus
sr-PE 906 CG7847-PE 44..429 157..556 209 22.9 Plus