Clone LD40177 Report

Search the DGRC for LD40177

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:77
Vector:pOT2
Associated Gene/TranscriptCG11208-RA
Protein status:LD40177.pep: gold
Preliminary Size:1971
Sequenced Size:1985

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11208 2001-01-01 Release 2 assignment
CG11208 2001-09-19 Blastp of sequenced clone
CG11208 2003-01-01 Sim4 clustering to Release 3
CG11208 2008-04-29 Release 5.5 accounting
CG11208 2008-08-15 Release 5.9 accounting
CG11208 2008-12-18 5.12 accounting

Clone Sequence Records

LD40177.complete Sequence

1985 bp (1985 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058683

> LD40177.complete
CTTCTGTTGGACTCTACATTTTAATTTGTTTAACAAATTCTTGGGCCAGT
ACGCAAGAAAACGCGGCGGCGTAAATTACATTTTTAGTACAATTCTCACT
GAAAACCGCGCAAAATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAGAA
TCTTTGAAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATCCC
GGTCATCGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACATCG
GAATGCGCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCTAC
CTGACTGGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTGCT
CCATGTTACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACTAA
TCGTTATTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCTTT
CAGGAGTGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCTGC
CCGTCCGGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGTGC
GCTATGCCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTGGC
AATATCTTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTGGC
CCATCCGGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAGGG
CCGCCAAGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCAAG
GGTTCCGCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAGAA
CACCAACCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATCCG
ATACGGCTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAAAG
GCCGATGTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCATTT
CGGAAAGGCTCCACGCTACGACAAGGACGTGAAGTTTATCCAGGTGGACA
TCAATCCTGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCCATCCAG
GCGGACATCCGTCCATTCGCCGAGCAATTGTTTGAGCAAATGAACGCTGT
TAACTTCCGCTTCGGCTACGAGCAGGATTGGTGGAAGCAGTTGGCCGTCA
AGTGCAAGCAGAACCGCGACACCGTGCAAAAGATGTCTTTGAACACGGAG
ACGCCGCTGAACTACTACGCGGTGTTCCACCATCTCCGTGAGCTGCTGCC
CAAGGACACGATCATTGTTAGTGAGGGAGCCAACACCATGGATATTGGTC
GCTCCATGCTGCTGAACGAGCAGCCCCGTCATCGCCTGGATGCCGGTACC
TTTGGCACCATGGGCGTGGGTCCTGGATTCGCCGTGGCCGCCGCGCTTTT
CTGCCGCGACTTTGCGCCCGGAAAGCGAGTCCTGTGCGTGGAGGGAGACA
GCGCCTTTGGATTCTCGGGCATGGAAATTGAGACTATGGTGCGCTATAAG
CTGCCCGTCACCATTGTGATTGTGAACAACAATGGCATCTATGGCGGCTT
CGACAAGGACACTTTTGAGGCCATTCGCAGTGAGGGCGATCTTACCCAAA
TCACACCACCATCGGCATTGGGAGTTCAGGTGCGCTACGAGGAGATGATG
AAAATGTTCGGCATGAAGGGCTACTTCTGCACAGAGATCGAACAGCTGCA
GGCGGCTGTCAAGGCGGCCAATCAGCTCACCGACAGGCCAACCATCATTA
ATGTGGCCATCAGCCCGTCATCCGATCGCAAGCCGCAGTCCTTCAACTGG
CTCACAGAGTCAAAACTGTAGAATACCATTAAGGTTTAGGTCTTAAGCAC
GATGTTCACCATTCCGAAAGTTATATTGCCACGAATTTTTCTGTATATAC
ATGCAATTTTTGATACGCCCTCATTATTGTTGGCTACTCATTAATTGTTG
GCTCGCTTTTAAAAAAAAAAAAAAAAAAAAAAAAA

LD40177.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-RA 2341 CG11208-RA 95..2053 1..1959 9795 100 Plus
CG11048-RA 2572 CG11048-RA 2442..2572 1959..1829 655 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16130222..16131462 1601..361 5995 98.9 Minus
chr2R 21145070 chr2R 16129838..16130158 1922..1602 1590 99.7 Minus
chr2R 21145070 chr2R 16131532..16131731 363..164 970 99 Minus
chr2R 21145070 chr2R 16132247..16132412 166..1 755 97 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20243173..20244413 1601..361 6205 100 Minus
2R 25286936 2R 20242752..20243109 1959..1602 1790 100 Minus
2R 25286936 2R 20244483..20244682 363..164 1000 100 Minus
2R 25286936 2R 20245198..20245363 166..1 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20244372..20245612 1601..361 6205 100 Minus
2R 25260384 2R 20243951..20244308 1959..1602 1790 100 Minus
2R 25260384 2R 20245682..20245881 363..164 1000 100 Minus
2R 25260384 2R 20246397..20246562 166..1 830 100 Minus
Blast to na_te.dros performed 2019-03-16 22:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1974..2045 245..175 114 63.9 Minus

LD40177.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:03 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16129810..16130158 1602..1960 96 <- Minus
chr2R 16130222..16131461 362..1601 98 <- Minus
chr2R 16131534..16131729 166..361 98 <- Minus
chr2R 16132248..16132412 1..165 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:28 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 115..1821 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:48 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 115..1821 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:30 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 115..1821 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:12 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 115..1821 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:02 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 1..1707 115..1821 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:01 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 37..1995 1..1960 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:48 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 37..1995 1..1960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:30 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 26..1984 1..1959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:12 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 37..1995 1..1960 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:02 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
CG11208-RA 26..1984 1..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:03 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20242751..20243109 1602..1960 99 <- Minus
2R 20243173..20244412 362..1601 100 <- Minus
2R 20244485..20244680 166..361 100 <- Minus
2R 20245199..20245363 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:03 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20242751..20243109 1602..1960 99 <- Minus
2R 20243173..20244412 362..1601 100 <- Minus
2R 20244485..20244680 166..361 100 <- Minus
2R 20245199..20245363 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:03 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20242751..20243109 1602..1960 99 <- Minus
2R 20243173..20244412 362..1601 100 <- Minus
2R 20244485..20244680 166..361 100 <- Minus
2R 20245199..20245363 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:30 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16130256..16130614 1602..1960 99 <- Minus
arm_2R 16130678..16131917 362..1601 100 <- Minus
arm_2R 16131990..16132185 166..361 100 <- Minus
arm_2R 16132704..16132868 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:34 Download gff for LD40177.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20243950..20244308 1602..1960 99 <- Minus
2R 20244372..20245611 362..1601 100 <- Minus
2R 20245684..20245879 166..361 100 <- Minus
2R 20246398..20246562 1..165 100   Minus

LD40177.hyp Sequence

Translation from 114 to 1820

> LD40177.hyp
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKL*

LD40177.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 568 CG11208-PA 1..568 1..568 2955 100 Plus

LD40177.pep Sequence

Translation from 114 to 1820

> LD40177.pep
MAEVEAVQIIAESLKQQGVEYVFGIIGIPVIELSMAFQAAGLKYIGMRNE
QAACYAAQAIGYLTGKPGVCLVVSGPGLLHVTGGMANAQVNCWPLIVIGG
ATNQDHEGIGGFQECPQVELSRPYCKYAARPATAALIPLHVEKAVRYATY
GRPGVAYLDFPGNILQSKAQEASIYKALAHPAPPLAYPPHDDVIRAAKLL
RQAKRPLVIVGKGSAYAHAENTLRHFIENTNLPFLPTPMGKGVVSDTAPQ
CVSSARTLALQKADVVLLLGARLNWILHFGKAPRYDKDVKFIQVDINPEE
LHNSVVASVAIQADIRPFAEQLFEQMNAVNFRFGYEQDWWKQLAVKCKQN
RDTVQKMSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLL
NEQPRHRLDAGTFGTMGVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGF
SGMEIETMVRYKLPVTIVIVNNNGIYGGFDKDTFEAIRSEGDLTQITPPS
ALGVQVRYEEMMKMFGMKGYFCTEIEQLQAAVKAANQLTDRPTIINVAIS
PSSDRKPQSFNWLTESKL*

LD40177.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13157-PA 568 GF13157-PA 1..568 1..568 2999 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20879-PA 568 GG20879-PA 1..568 1..568 3019 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22747-PA 568 GH22747-PA 1..568 1..568 2888 93.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11208-PA 568 CG11208-PA 1..568 1..568 2955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18529-PA 568 GI18529-PA 1..568 1..568 2909 94.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10162-PA 568 GL10162-PA 1..568 1..568 2961 96.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10842-PA 568 GA10842-PA 1..568 1..568 2959 96 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19803-PA 568 GM19803-PA 1..568 1..568 3046 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25296-PA 540 GD25296-PA 1..540 1..568 2824 94 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21395-PA 568 GJ21395-PA 1..568 1..568 2930 95.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15680-PA 574 GK15680-PA 1..568 1..568 2946 95.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13819-PA 568 GE13819-PA 1..568 1..568 3039 99.5 Plus