Clone LD40196 Report

Search the DGRC for LD40196

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:401
Well:96
Vector:pOT2
Associated Gene/TranscriptgammaTub23C-RA
Protein status:LD40196.pep: gold
Preliminary Size:1921
Sequenced Size:1857

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3157 2001-01-01 Release 2 assignment
CG3157 2001-11-29 Blastp of sequenced clone
CG3157 2003-01-01 Sim4 clustering to Release 3
gammaTub23C 2008-04-29 Release 5.5 accounting
gammaTub23C 2008-08-15 Release 5.9 accounting
gammaTub23C 2008-12-18 5.12 accounting

Clone Sequence Records

LD40196.complete Sequence

1857 bp (1857 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069633

> LD40196.complete
CTTTCTTAAAATTACAAAGTACGTCCCCGCTGTGGGATTTTTTAAAAATT
TTGTTATAATTCGACGATCTTTTAGTTGTGTTTTATTTTATTTCGACTAA
TTCGACCTTAAACGCGAAACTTCACTTGACGATTCTGGCCGGAAACAACA
CACCACAATGCCAAGTGAAATAATTACTTTGCAGCTTGGGCAGTGCGGCA
ATCAAATTGGCTTTGAGTTCTGGAAAAGATTGTGCCTGGAGCATGGCATC
TCCCCTAGCGGCGTGCTGGAGGACTTTGCCAATGATGGCTTGGACCGCAA
GGATGTGTTCTTCTACCAGGCGGACGACGACCACTACATACCCCGCGCGG
TGCTCTTGGACTTGGAACCGAGGGTGATCAATACCATAATGGGCTCGGTC
TACTCCAAGCTCTACAATCCGGAAAATGTGTACCTATCCAAGCACGGAGG
CGGTGCGGGCAACAACTGGGCCTCAGGCTATAGCCAGGGCGAAAAGCTGC
AAGAAGAGGTATTCGACATCATTGACCGTGAGGCAGATGGAAGCGATTCG
TTGGAGGGCTTTATACTTTGCCATTCGATTGCTGGCGGAACGGGATCGGG
AATGGGCTCCTTTATCATGGAGCGCCTGGCGGACCGCTATCCCAAGAAAC
TTATCCAAACATTCAGTGTGTTTCCCAATCAGGACGAGATCAGTGATGTA
GTGGTGCAGCCATACAACTCCATGCTCACCCTGAAACGTTTGACTACGGC
TGCGGACAGTGTGGTTGTCCTGGACAACACTGCTCTTAATCGTATTGCCT
GCGATCGCTTGCACATTCAGAATCCCAGCTTTTCGCAGATCAACAACCTG
GTCTCCACCATAATGAGCGTCAGCACCACTACGCTGAGGTATCCATCCTA
CATGAACAACAATCTCATTGGGCTGACGGCTCCTTTAATCCCGACGCCCC
AGCTGCATTTTCTCATGACAGGCTACACGCCGCTGACTAGCGATTCGGAT
ATCCATACCCAGCAGCTGGTTAATGTGCGAAAGACTACTGTTCTAGATGT
AATGCGGCGTCTGTTGCAGCCCAAGAACATGATGGTGTCCACTGGTCCCG
ACAAGTCAAATCATCACTGCTACATCTCCATTCTAAACATTATCCAGGGC
GAGGTGGATCCCACTCAAGTGCACAAGTCACTGCAGCGCATCCGCGACCG
CAAGATGGCCCAGTTCATTCCCTGGGGCCCCACCTCTATCCAGGTAGCCC
TTTCCCGCTCATCGCCCTACGTGCAGAGCAACCATCGAGTGTCCGGACTG
ATGCTGGCCAACCACACCAGCATTTGCTCGCTTTTCGAGCGAGCTCTCAA
CCAGTATGACAAGCTTCGCAAGCGCGGCGCCTTTCTTGACCAGTTTCGAC
GCGAGGACATCTTCAAGGACGACCTCAATGAGCTGGACGAATCTCGCGAA
ACTGTTGACTGCCTGGTGCAAGAGTATGAGGCAGCCACGCGTGAGGACTA
CATGCAGTTTTCAGTGAAGCGGGGAAATGGGCCAGTTGACTCCAAGTCGG
AGGATAGTCGATCTGTGACCAGCGCCGGTTCCTAGTTCGCTTGTGCCAGA
AGAAATGCGTGCCATGCATCTTAACCAATGTATTTTAAAATGTAATATTC
TCCAATGACGATGGGATTCGAAATCCTTAAGTAGTAGTGATAAGACGATT
GTTGGTATGACTCGCATGTATGTAAACGCTGTTTCGTCTTTTACGATATT
TAACGTTCGTATTTCCATTGTTGCAAAATTACACATGAGATTTCCCGATC
ATGTTTAATATGTGACACATTAAATAAAAAACAGTTTTTAAAAAAAAAAA
AAAAAAA

LD40196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub23C-RA 1918 gammaTub23C-RA 76..1917 1..1842 9210 100 Plus
gammaTub23C.a 1837 gammaTub23C.a 70..1836 76..1842 8835 100 Plus
gammaTub37C-RA 1637 gammaTub37C-RA 123..910 197..984 1480 79.1 Plus
gammaTub37C-RA 1637 gammaTub37C-RA 1032..1141 1118..1227 295 84.5 Plus
gammaTub37C-RA 1637 gammaTub37C-RA 1265..1402 1351..1488 210 76.8 Plus
gammaTub37C-RA 1637 gammaTub37C-RA 942..1004 1028..1090 165 84.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2973076..2974509 408..1839 7000 99.4 Plus
chr2L 23010047 chr2L 19183234..19183805 984..413 1045 78.8 Minus
chr2L 23010047 chr2L 2972551..2972756 1..206 1030 100 Plus
chr2L 23010047 chr2L 2972815..2973017 207..409 1015 100 Plus
chr2L 23010047 chr2L 19182683..19183143 1488..1028 520 74.2 Minus
chr2L 23010047 chr2L 19183935..19184119 391..207 400 81.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2973427..2974861 408..1842 7175 100 Plus
2L 23513712 2L 19184649..19185220 984..413 1045 78.8 Minus
2L 23513712 2L 2972902..2973107 1..206 1030 100 Plus
2L 23513712 2L 2973166..2973368 207..409 1015 100 Plus
2L 23513712 2L 19184098..19184558 1488..1028 535 74.4 Minus
2L 23513712 2L 19185350..19185534 391..207 400 81.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2973427..2974861 408..1842 7175 100 Plus
2L 23513712 2L 19184649..19185220 984..413 1045 78.8 Minus
2L 23513712 2L 2972902..2973107 1..206 1030 100 Plus
2L 23513712 2L 2973166..2973368 207..409 1015 100 Plus
2L 23513712 2L 19185350..19185534 391..207 400 81 Minus
2L 23513712 2L 19184359..19184468 1227..1118 295 84.5 Minus
2L 23513712 2L 19184098..19184235 1488..1351 210 76.8 Minus
2L 23513712 2L 19184496..19184558 1090..1028 165 84.1 Minus
Blast to na_te.dros performed on 2019-03-15 19:43:32 has no hits.

LD40196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:44:10 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2972551..2972756 1..206 100 -> Plus
chr2L 2972815..2973017 207..409 100 -> Plus
chr2L 2973078..2974509 410..1839 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:29 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 1..1428 158..1585 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:12 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 1..1428 158..1585 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:01:05 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 1..1428 158..1585 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:32 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 1..1428 158..1585 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:16 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 1..1428 158..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:46 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 11..1849 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:12 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 11..1849 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:05 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 12..1850 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:32 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 11..1849 1..1839 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:16 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
gammaTub23C-RA 12..1850 1..1839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:44:10 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2972902..2973107 1..206 100 -> Plus
2L 2973166..2973368 207..409 100 -> Plus
2L 2973429..2974858 410..1839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:44:10 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2972902..2973107 1..206 100 -> Plus
2L 2973166..2973368 207..409 100 -> Plus
2L 2973429..2974858 410..1839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:44:10 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2972902..2973107 1..206 100 -> Plus
2L 2973166..2973368 207..409 100 -> Plus
2L 2973429..2974858 410..1839 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:05 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2972902..2973107 1..206 100 -> Plus
arm_2L 2973166..2973368 207..409 100 -> Plus
arm_2L 2973429..2974858 410..1839 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:05 Download gff for LD40196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2973429..2974858 410..1839 100   Plus
2L 2972902..2973107 1..206 100 -> Plus
2L 2973166..2973368 207..409 100 -> Plus

LD40196.pep Sequence

Translation from 157 to 1584

> LD40196.pep
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDV
FFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGA
GNNWASGYSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMG
SFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAAD
SVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMN
NNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMR
RLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKM
AQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSLFERALNQY
DKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEYEAATREDYMQ
FSVKRGNGPVDSKSEDSRSVTSAGS*

LD40196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14993-PA 473 GF14993-PA 1..472 1..474 2418 93.7 Plus
Dana\GF15204-PA 458 GF15204-PA 1..448 1..452 2095 84.5 Plus
Dana\GF12605-PA 447 GF12605-PA 3..423 4..441 690 34.9 Plus
Dana\GF17765-PA 446 GF17765-PA 3..423 4..441 685 34.6 Plus
Dana\GF11391-PA 474 GF11391-PA 3..458 4..447 657 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24903-PA 475 GG24903-PA 1..475 1..475 2484 96.8 Plus
Dere\GG21644-PA 457 GG21644-PA 1..448 1..452 2046 83.2 Plus
Dere\betaTub85D-PA 446 GG17374-PA 3..423 4..441 685 34.6 Plus
Dere\GG22960-PA 454 GG22960-PA 3..438 4..447 685 34.1 Plus
Dere\GG20906-PA 475 GG20906-PA 3..451 4..441 650 32.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11085-PA 476 GH11085-PA 1..475 1..474 2312 89.7 Plus
Dgri\GH13477-PA 454 GH13477-PA 1..454 1..459 2055 82.2 Plus
Dgri\GH20203-PA 447 GH20203-PA 3..423 4..441 690 34.9 Plus
Dgri\GH20987-PA 454 GH20987-PA 3..438 4..447 686 34.1 Plus
Dgri\GH19142-PA 446 GH19142-PA 3..423 4..441 685 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub23C-PA 475 CG3157-PA 1..475 1..475 2466 100 Plus
gammaTub37C-PB 457 CG17566-PB 1..448 1..452 1964 83.2 Plus
gammaTub37C-PA 457 CG17566-PA 1..448 1..452 1964 83.2 Plus
betaTub97EF-PC 457 CG4869-PC 3..436 4..451 749 34.5 Plus
betaTub97EF-PB 457 CG4869-PB 3..436 4..451 745 34.1 Plus
betaTub60D-PB 453 CG3401-PB 3..437 4..447 740 34.2 Plus
betaTub60D-PA 454 CG3401-PA 3..438 4..447 739 34.1 Plus
betaTub56D-PB 447 CG9277-PB 3..436 4..451 738 33.9 Plus
betaTub85D-PA 446 CG9359-PA 3..443 4..458 727 33.3 Plus
betaTub56D-PA 456 CG9277-PA 29..445 21..451 676 32.6 Plus
alphaTub84D-PA 450 CG2512-PA 3..433 4..441 609 32.1 Plus
alphaTub84B-PA 450 CG1913-PA 3..433 4..441 607 31.8 Plus
alphaTub85E-PA 449 CG9476-PA 3..433 4..441 604 32.1 Plus
alphaTub67C-PA 462 CG8308-PA 3..444 4..441 566 30.6 Plus
CG32396-PA 462 CG32396-PA 3..424 4..443 556 31 Plus
CG7794-PA 455 CG7794-PA 6..425 4..429 520 30 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17602-PA 478 GI17602-PA 1..476 1..473 2329 90.4 Plus
Dmoj\GI17230-PA 456 GI17230-PA 1..446 1..452 2074 84.3 Plus
Dmoj\GI20729-PA 447 GI20729-PA 3..423 4..441 690 34.9 Plus
Dmoj\GI21321-PA 454 GI21321-PA 3..438 4..447 687 34.1 Plus
Dmoj\GI23599-PA 446 GI23599-PA 3..423 4..441 685 34.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26300-PA 471 GL26300-PA 1..467 1..469 2371 93.2 Plus
Dper\GL21122-PA 458 GL21122-PA 1..448 1..452 2080 83.8 Plus
Dper\GL16725-PA 447 GL16725-PA 3..423 4..441 690 34.9 Plus
Dper\GL13671-PA 445 GL13671-PA 3..422 4..441 643 33.9 Plus
Dper\GL23875-PA 511 GL23875-PA 3..499 4..458 606 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16328-PA 471 GA16328-PA 1..467 1..469 2371 93.2 Plus
Dpse\GA14559-PA 458 GA14559-PA 1..448 1..452 2080 83.8 Plus
Dpse\GA27086-PB 455 GA27086-PB 3..443 4..458 710 34 Plus
Dpse\GA27686-PA 447 GA27686-PA 3..423 4..441 690 34.9 Plus
Dpse\GA21728-PA 446 GA21728-PA 3..423 4..441 685 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18381-PA 475 GM18381-PA 1..475 1..475 2531 98.9 Plus
Dsec\GM17021-PA 457 GM17021-PA 1..448 1..452 2041 83 Plus
Dsec\GM19828-PA 447 GM19828-PA 3..423 4..441 690 34.9 Plus
Dsec\GM11852-PA 454 GM11852-PA 3..438 4..447 690 34.4 Plus
Dsec\GM26260-PA 446 GM26260-PA 3..423 4..441 685 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23196-PA 475 GD23196-PA 1..475 1..475 2531 98.9 Plus
Dsim\GD21771-PA 457 GD21771-PA 1..448 1..452 2050 83.2 Plus
Dsim\GD25319-PA 447 GD25319-PA 3..423 4..441 690 34.9 Plus
Dsim\GD20798-PA 446 GD20798-PA 3..423 4..441 685 34.6 Plus
Dsim\GD19940-PA 450 GD19940-PA 3..433 4..441 584 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17947-PA 478 GJ17947-PA 1..476 1..473 2340 90.4 Plus
Dvir\GJ17988-PA 455 GJ17988-PA 1..455 1..460 2074 83.1 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 3..423 4..441 690 34.9 Plus
Dvir\GJ21592-PA 454 GJ21592-PA 3..438 4..447 687 34.1 Plus
Dvir\GJ23573-PA 446 GJ23573-PA 3..423 4..441 685 34.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24850-PA 472 GK24850-PA 1..467 1..470 2296 90 Plus
Dwil\GK23849-PA 458 GK23849-PA 1..447 1..452 2055 83.8 Plus
Dwil\GK15706-PA 447 GK15706-PA 3..423 4..441 690 34.9 Plus
Dwil\GK22203-PA 454 GK22203-PA 3..438 4..447 687 34.1 Plus
Dwil\GK12133-PA 446 GK12133-PA 3..423 4..441 685 34.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18195-PA 475 GE18195-PA 1..475 1..475 2485 97.1 Plus
Dyak\GE12662-PA 457 GE12662-PA 1..448 1..452 2055 83.4 Plus
Dyak\betaTub56D-PA 447 GE13844-PA 3..423 4..441 690 34.9 Plus
Dyak\GE14397-PA 454 GE14397-PA 3..438 4..447 686 34.1 Plus
Dyak\GE24779-PA 446 GE24779-PA 3..423 4..441 685 34.6 Plus

LD40196.hyp Sequence

Translation from 157 to 1584

> LD40196.hyp
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDV
FFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGA
GNNWASGYSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMG
SFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAAD
SVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMN
NNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMR
RLLQPKNMMVSTGPDKSNHHCYISILNIIQGEVDPTQVHKSLQRIRDRKM
AQFIPWGPTSIQVALSRSSPYVQSNHRVSGLMLANHTSICSLFERALNQY
DKLRKRGAFLDQFRREDIFKDDLNELDESRETVDCLVQEYEAATREDYMQ
FSVKRGNGPVDSKSEDSRSVTSAGS*

LD40196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTub23C-PA 475 CG3157-PA 1..475 1..475 2466 100 Plus
gammaTub37C-PB 457 CG17566-PB 1..448 1..452 1964 83.2 Plus
gammaTub37C-PA 457 CG17566-PA 1..448 1..452 1964 83.2 Plus
betaTub97EF-PC 457 CG4869-PC 3..436 4..451 749 34.5 Plus
betaTub97EF-PB 457 CG4869-PB 3..436 4..451 745 34.1 Plus