Clone LD40271 Report

Search the DGRC for LD40271

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:402
Well:71
Vector:pOT2
Associated Gene/TranscriptCG4749-RA
Protein status:LD40271.pep: gold
Preliminary Size:1752
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4749 2001-01-01 Release 2 assignment
CG4749 2001-09-19 Blastp of sequenced clone
CG4749 2003-01-01 Sim4 clustering to Release 3
CG4749 2008-04-29 Release 5.5 accounting
CG4749 2008-08-15 Release 5.9 accounting
CG4749 2008-12-18 5.12 accounting

Clone Sequence Records

LD40271.complete Sequence

1623 bp (1623 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058685

> LD40271.complete
TTTCAACGGATTGCGGAAAATGTTGAAAGCACGGAACGTTTGTTTGCTGT
CCAGGAGGTGGAAGAGTGGCGCCAAGAAGCGATGGAATGTCCTGCAGAAC
AAGAAGAACAACTGTGACCGAGCGCTGGAGAACTTCGATGACTTCTACGG
AAGTGTCTACGGCACCCGGTGGAAGAACATGCGGGCGGCGCTTCTCACGA
GGCACAAGTATGTCGCCCTGGTCAACAATTTCGGGGACACGGAGCAGACG
TGCGCCATGCTGGAGTCAGATGGAGCCATCAACATGAAGTCGCTTATTAA
CCTGGCGCAGGATCGGGTAAAGGACAGCACGGAGACGGTGCCGGAACAAG
GCAAATCACGTCATGAAATTGAAAGCAAACTGGATGCACTGCTGCGGAAA
CAGCAGGAGCGCGAGGTGGCCTCCATATACCCGAGCTCGCCAGAAGATGG
TTCATCGGCGCCACTGCCGCTGGAACTGAAGTTTGACAACGTAGAGGAAG
ATCAGCCGGAGCAAGTGAATAATCCCTTCAAGCAGAGCCTGACGAAGGCT
TTGGAGGAGGATGTGAAGCTGGACGAGCATCGGTTGGTGGATCCCCAATT
TGGCACAGGCGGACTGTATGAATACATGCCTGCCCACAGCATCAAGGGCA
TGGAGGACTGGGTGGCAGAGTCGGAGCACTACAAGTACTACCAAACCAGC
GCCGACTTCCCGCTCGCCATTGAACCGGAGCCTTCCTTTCACTACCCCGA
GCATCTGTCCCTGTACACATATGAAATGGGCAACTGCTCGGACTTCAAGG
GACCCAAGAAGTGCATGACCGGTGTGCTCTCCCACTTTATGATGGATGGT
GCCTCGACTTTGCCGCCTCTCTTCCTGCAGGTGAAGCCTGGCGAGCGTGT
GCTCGATGCCTGTGCCTCTCCCGGCGGCAAATCGCTGCTTATGCTGCAGA
CGCTGCACTTGGACCACCTGGTCTGCAATGACATCCAAGAATCCCGCCTA
AACAAGCTGCGCAAAGTGATGCAGGAGTACCTGTTCGACTACAAGGAGCG
CTGGGCTGGAAAGCGCCTCATCCTCAGCCAGAGTGACGCCCGCAATCTGG
ACCAGTACGAGCAGTTCGACAAGATCCTGGTCGACGTGCCCTGCACCACG
GATCGCCATGTGCTCAACGAGCAGGACAACAATATTTTCAAGCCGACGCG
CATAAAGGAGCGCCTGCGGATACCAGAGCTCCAGGCAGGCATCCTGGCCA
ACTGCTTGCGTCTCCTGCGACCAGGCGGCAGTTTGGTCTACTCCACCTGC
TCGCTGTCGCCCATCCAGAACGATGGTGTCGTCCACATGGCTCTGCAAAA
GGTCTTCACGGAGTACGGCATCACAACTACCATCAAGGATCTGAGTCGCC
ACACGGCGCTCTTCAGCGATGTCTTCAAGTTCGAGCACCCAAAGGGACTC
AAGTATGGACAAATGGTGGTGCCCTACCTGCCGGCCAACTTTGGACCCAT
GTACTTTAGTAAAATAACCAGAAATGTGTGATTAAATGAAAGTTGTTGGC
TGATTAACAAGACTATATAACTGTTGCCCCAATAAATAATAAGAGTTGTA
AACTAAAAAAAAAAAAAAAAAAA

LD40271.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4749-RA 1622 CG4749-RA 14..1622 1..1609 8045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1147763..1149366 1..1604 7990 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1147846..1149454 1..1609 8045 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1147846..1149454 1..1609 8045 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:06:09 has no hits.

LD40271.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:07:05 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1147763..1149366 1..1604 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:34 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 1..1512 20..1531 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:59:50 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 1..1512 20..1531 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:09:33 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 1..1512 20..1531 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:14 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 1..1512 20..1531 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:03 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 1..1512 20..1531 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:04 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 14..1617 1..1604 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:59:50 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 14..1617 1..1604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:33 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 25..1628 1..1604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:14 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 14..1617 1..1604 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:03 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
CG4749-RA 25..1628 1..1604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:05 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1147846..1149449 1..1604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:05 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1147846..1149449 1..1604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:07:05 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1147846..1149449 1..1604 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:33 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1147846..1149449 1..1604 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:37 Download gff for LD40271.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1147846..1149449 1..1604 100   Plus

LD40271.hyp Sequence

Translation from 0 to 1530

> LD40271.hyp
FNGLRKMLKARNVCLLSRRWKSGAKKRWNVLQNKKNNCDRALENFDDFYG
SVYGTRWKNMRAALLTRHKYVALVNNFGDTEQTCAMLESDGAINMKSLIN
LAQDRVKDSTETVPEQGKSRHEIESKLDALLRKQQEREVASIYPSSPEDG
SSAPLPLELKFDNVEEDQPEQVNNPFKQSLTKALEEDVKLDEHRLVDPQF
GTGGLYEYMPAHSIKGMEDWVAESEHYKYYQTSADFPLAIEPEPSFHYPE
HLSLYTYEMGNCSDFKGPKKCMTGVLSHFMMDGASTLPPLFLQVKPGERV
LDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRKVMQEYLFDYKER
WAGKRLILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKPTR
IKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK
VFTEYGITTTIKDLSRHTALFSDVFKFEHPKGLKYGQMVVPYLPANFGPM
YFSKITRNV*

LD40271.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4749-PA 503 CG4749-PA 1..503 7..509 2660 100 Plus
Nsun2-PA 746 CG6133-PA 162..339 282..449 196 29.7 Plus

LD40271.pep Sequence

Translation from 19 to 1530

> LD40271.pep
MLKARNVCLLSRRWKSGAKKRWNVLQNKKNNCDRALENFDDFYGSVYGTR
WKNMRAALLTRHKYVALVNNFGDTEQTCAMLESDGAINMKSLINLAQDRV
KDSTETVPEQGKSRHEIESKLDALLRKQQEREVASIYPSSPEDGSSAPLP
LELKFDNVEEDQPEQVNNPFKQSLTKALEEDVKLDEHRLVDPQFGTGGLY
EYMPAHSIKGMEDWVAESEHYKYYQTSADFPLAIEPEPSFHYPEHLSLYT
YEMGNCSDFKGPKKCMTGVLSHFMMDGASTLPPLFLQVKPGERVLDACAS
PGGKSLLMLQTLHLDHLVCNDIQESRLNKLRKVMQEYLFDYKERWAGKRL
ILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKPTRIKERLR
IPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFTEYG
ITTTIKDLSRHTALFSDVFKFEHPKGLKYGQMVVPYLPANFGPMYFSKIT
RNV*

LD40271.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15166-PA 506 GF15166-PA 1..505 1..502 2364 85.9 Plus
Dana\GF21493-PA 737 GF21493-PA 162..339 276..443 202 30.8 Plus
Dana\GF11004-PA 441 GF11004-PA 223..380 286..444 159 28.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24769-PA 503 GG24769-PA 1..503 1..503 2630 95 Plus
Dere\EG:EG0007.9-PA 738 GG18560-PA 162..340 276..448 195 29.9 Plus
Dere\GG16283-PA 439 GG16283-PA 222..391 286..452 154 27.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11175-PA 510 GH11175-PA 1..510 1..503 2103 75.6 Plus
Dgri\GH24818-PA 729 GH24818-PA 163..339 276..443 195 29.9 Plus
Dgri\GH16775-PA 449 GH16775-PA 230..386 289..444 170 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)10685-PA 503 CG4749-PA 1..503 1..503 2660 100 Plus
Nsun2-PA 746 CG6133-PA 162..339 276..443 196 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17979-PA 512 GI17979-PA 1..511 1..502 2151 77.1 Plus
Dmoj\GI16150-PA 725 GI16150-PA 163..341 276..443 204 29.3 Plus
Dmoj\GI13435-PA 443 GI13435-PA 222..384 285..448 190 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15584-PA 504 GL15584-PA 1..504 1..503 2290 84.3 Plus
Dper\GL21386-PA 730 GL21386-PA 162..339 276..443 205 30.3 Plus
Dper\GL24972-PA 438 GL24972-PA 224..385 285..444 169 29.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18402-PA 504 GA18402-PA 1..504 1..503 2280 83.9 Plus
Dpse\GA19379-PA 729 GA19379-PA 162..339 276..443 205 30.3 Plus
Dpse\GA10764-PA 438 GA10764-PA 224..385 285..444 171 31.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16796-PA 503 GM16796-PA 1..503 1..503 2668 97 Plus
Dsec\GM12703-PA 744 GM12703-PA 162..339 276..443 198 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23073-PA 361 GD23073-PA 30..361 172..503 1788 98.5 Plus
Dsim\GD23072-PA 152 GD23072-PA 1..150 1..150 764 94.7 Plus
Dsim\EG:EG0007.9-PA 747 GD16312-PA 162..339 276..443 197 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19531-PA 510 GJ19531-PA 1..510 1..503 2148 77.5 Plus
Dvir\GJ16427-PA 725 GJ16427-PA 163..341 276..443 196 29.6 Plus
Dvir\GJ11797-PA 413 GJ11797-PA 196..354 286..444 179 30.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24670-PA 505 GK24670-PA 1..505 1..503 2157 78.4 Plus
Dwil\GK17644-PA 742 GK17644-PA 162..339 276..443 208 31.3 Plus
Dwil\GK20395-PA 457 GK20395-PA 230..407 286..464 175 29.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17352-PA 504 GE17352-PA 1..503 1..502 2617 95.4 Plus
Dyak\EG:EG0007.9-PA 746 GE16872-PA 162..339 276..443 191 28.6 Plus