Clone LD40282 Report

Search the DGRC for LD40282

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:402
Well:82
Vector:pOT2
Associated Gene/TranscriptCG9104-RA
Protein status:LD40282.pep: gold
Preliminary Size:1643
Sequenced Size:1685

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9104 2001-01-01 Release 2 assignment
CG9104 2001-07-04 Blastp of sequenced clone
CG9104 2003-01-01 Sim4 clustering to Release 3
CG9104 2008-04-29 Release 5.5 accounting
CG9104 2008-08-15 Release 5.9 accounting
CG9104 2008-12-18 5.12 accounting

Clone Sequence Records

LD40282.complete Sequence

1685 bp (1685 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051914

> LD40282.complete
CCACCTGCTGTTAAAGCTTTGGAGTCCACTCCGCGGAAGGAAGCAGAGGA
TGTGGATGCGGTGATACTGGAATCTTTTGAACGGCATGCATTCCCATACG
AATGAGACGGCTGCGACGTCGACAACGGCGGGCGCGGTCACGAATGGAGC
AGGCGGATCAGGAGCTGGAGCAGCGGGTGCCCATGGCAGCACGGAGGGCA
AGATCCGGTGCATCTTCCTCAGCGAGTTTCATGCGACGGCGGGCTGCAAG
ATAAGCTGCCAGGTTCCTGATAACTACATATCCAAGGATGTGTTCGATGC
TATCAATGTTTACATCATACCCAAGCAGCATCTTCAACGCTGCATTCTCA
CCGTCAACGCAATGGATGTAAAGATAGTCGGCTATCCAGTGGGCATCCAG
GATCAGCAGAAGTACGCACGGAATGCCTTCCTGTTTAACCTATGCTTTGT
CTGCGACTCGCGGGCCAGGAGCGTCCAGTACGAGCCGGTCGTCAAGAAGC
TGTCCGAGTACCTCATAATGATGGAGGAGGAGTCGTGCTTCCTGTCTCGC
GAAGATGACAAGCGCCGCCTACAGAACATCTTTGAGACTGTACTACGCGA
CCTTAACGAGCGGAAGGTGGCCACCATTGTTGAGGGCGATAACACTATAT
ACCTGAAGATCGTCATGCACAAGCCGGACCCGCCGCCGGTCAAGGATCAC
ATGGTGCCCCTGCTGCTGGCGAACCTGCGCGATGCTCCGCTGGACAACTG
GGACCTTACCACACAACAGATCCTGCCTTATATAAATGGAATCAACCATG
TTGCCCGCATTGCCGCCGAAGCGGACGTGGAAACGGACCTGGTCAAGTCG
TGCATACAGAATCTGGTCTACTACGGGGTCGTTCAGCTGCTGCCAATCCT
GAAGTACAGCAACGTGTACATGACGCAGAACCTAAAGCATCTCATCCAGA
GCGCATCACTGAGCGGCGCATGCCGGAAATACGTGGCCTTGCGTCCGGAC
AAGACGCTGCCCAGTGTTCAGCGCATCTTTCAGTTCTACGCCTCGATGAC
TCACGGCGTTACTCTGCGAGCGATCTGCCAGAGATTGTGCCCCCAGCACC
ACAACATCGATGAGCGTCGCATGGTGATCTTCGGGCTGCAGCACCGATTC
ATTCGCTGCATCCACAAGTACCCGGTGTTTACGGGCTCAGTGCCTTCCGG
GCGGCAGAAGATGTACACCGGGCTGATCAGCTTTGACGAGATCTGCTGCA
AGACGGGCCTCTCGCCCTGCACCATCGAGCGGGATATCGAGAAGGACACG
AATGTGACTGTGATCTGGAAGTGACGACCGGAAGGACTTCTCCGGCCAGT
TGGGTTTGTTGTAGTTTGTAAGCGAACCGATTGTTATGTTTCCAAATGCT
TTTTTATATACGCGCATATACACATTAAAGTTTAAGAATTCACTGGTTTG
GCTTGGGCTGGTTCCGGAATCGCTTTGCCAGCTGGACAGCAATCAGGAAT
CCTTTGCGCTAGAGATAATGCAATCCTGAACCGCCTGGGCCACACAGGCG
TCCTCCGAGGCCATGCCTTAAATAGGAAATGTATGAAATTTTTAATGATA
CAACTTTGAAACAGACAGAGATAGTCATATAGTTACACAAACTTAATAAA
AACGCACCCATGGATTGAAAAAAAAAAAAAAAAAA

LD40282.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1783 CG9104-RA 81..1750 1..1670 8350 100 Plus
CG9104.a 1601 CG9104.a 260..1601 326..1667 6710 100 Plus
CG9104.a 1601 CG9104.a 1..262 1..262 1310 100 Plus
CG4872.a 1244 CG4872.a 1055..1244 1567..1378 950 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16772136..16773035 1667..768 4455 99.7 Minus
chrX 22417052 chrX 16773122..16773631 769..260 2535 99.8 Minus
chrX 22417052 chrX 16773689..16773952 264..1 1305 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:34:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16882506..16883408 1670..768 4515 100 Minus
X 23542271 X 16883495..16884004 769..260 2550 100 Minus
X 23542271 X 16884062..16884325 264..1 1320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16890604..16891506 1670..768 4515 100 Minus
X 23527363 X 16891593..16892102 769..260 2550 100 Minus
X 23527363 X 16892160..16892423 264..1 1320 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:43:58 has no hits.

LD40282.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:45:05 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16772136..16773033 770..1667 99 <- Minus
chrX 16773122..16773628 263..769 99 <- Minus
chrX 16773691..16773952 1..262 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:35 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 86..1324 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:06 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 86..1324 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:01:08 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 86..1324 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:36 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 86..1324 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:19 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 86..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:40 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1664 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:06 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1664 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:08 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 41..1707 1..1667 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:36 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1664 1..1664 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:19 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 41..1707 1..1667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:05 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882509..16883406 770..1667 100 <- Minus
X 16883495..16884001 263..769 100 <- Minus
X 16884064..16884325 1..262 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:05 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882509..16883406 770..1667 100 <- Minus
X 16883495..16884001 263..769 100 <- Minus
X 16884064..16884325 1..262 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:45:05 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882509..16883406 770..1667 100 <- Minus
X 16883495..16884001 263..769 100 <- Minus
X 16884064..16884325 1..262 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:08 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16778097..16778358 1..262 100   Minus
arm_X 16776542..16777439 770..1667 100 <- Minus
arm_X 16777528..16778034 263..769 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:41 Download gff for LD40282.complete
Subject Subject Range Query Range Percent Splice Strand
X 16892162..16892423 1..262 100   Minus
X 16890607..16891504 770..1667 100 <- Minus
X 16891593..16892099 263..769 100 <- Minus

LD40282.hyp Sequence

Translation from 85 to 1323

> LD40282.hyp
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWK*

LD40282.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 412 CG9104-PA 1..412 1..412 2168 100 Plus

LD40282.pep Sequence

Translation from 85 to 1323

> LD40282.pep
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWK*

LD40282.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21822-PA 418 GF21822-PA 1..418 1..412 1999 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18217-PA 414 GG18217-PA 1..414 1..412 2198 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11927-PA 402 GH11927-PA 2..402 1..412 1892 88.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Nprl2-PA 412 CG9104-PA 1..412 1..412 2168 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15348-PA 390 GI15348-PA 3..390 25..412 1946 92.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22789-PA 393 GL22789-PA 1..393 1..412 2038 92 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21545-PA 393 GA21545-PA 1..393 1..412 2043 92.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13358-PA 412 GM13358-PA 1..412 1..412 2215 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15716-PA 412 GD15716-PA 1..412 1..412 2225 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19452-PA 393 GJ19452-PA 1..393 1..412 2001 90.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25826-PA 392 GK25826-PA 8..392 28..412 1958 94 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15636-PA 412 GE15636-PA 1..412 1..412 2207 98.8 Plus