Clone LD40324 Report

Search the DGRC for LD40324

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:403
Well:24
Vector:pOT2
Associated Gene/TranscriptCG7656-RB
Protein status:LD40324.pep: validated not full length
Preliminary Size:1475
Sequenced Size:1329

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7656 2001-07-04 Blastp of sequenced clone
CG7656 2003-01-01 Sim4 clustering to Release 3
CG7656 2008-04-29 Release 5.5 accounting
CG7656 2008-08-15 Release 5.9 accounting
CG7656 2008-12-18 5.12 accounting

Clone Sequence Records

LD40324.complete Sequence

1329 bp (1329 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051915

> LD40324.complete
CAAGTCAAACAACAATAATAAAAATCATTAAAAGCGCGTACAAGAAGTCA
AAAAGAATTGCCCACACAAAGTACGGCGACAACTGCAAGTGGCTGAACAA
ATGACCACCGCCGCCTCCACATCGCAGCATGCGACATCGTCCTCCACAAT
GATGGCGGGCTCTGGATCCTTGGCGACCTCGTCGTCCGCCGCTGCCCCCA
CAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCTGGCCATGAAGTTCCCG
CACGACTATCCATACTCACCGCCATCCATACGCTTCCTGACGAAGGTCTG
GCATCCGAATGTTTACGAGAACGGTGATCTGTGCATATCCATACTACATC
CGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCCCTGCGAACGCTGGAAT
CCCACGCAGAATGTGCGCACCATCCTGCTGTCGGTCATATCGCTGCTCAA
TGAGCCGAACACATTCTCGCCGGCCAACGTGGACGCCTCGGTCATGTACC
GCCGATGGCGGGACTCACAGGACAATGAGTATCCAAACATCATACGAAAA
CAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGGAGGGCATTGTGGTTCC
GATGACCCTGGAGGACTACTGCCTGAAGCCCACGCGCAAGCCCACAACGG
AGTCTGGCCTGGATGCCAACTTCTACGATGATGATTTCGATCTGGAGACG
GAGGATGATCTGCCATCTGATGATGACTTCGATGAGGACGACGACGATGA
TGAGGACGAGGATGAAGATGAGGACAGTGCCACGGCGCCGATTAGCAAAA
ATAATGGAGGCAGCAGCAAGTGCAAGAACAACGGGCTGGTCAGAGAGGCG
GCCGCCGCCGGAGCGGACGATGCCGAATCCGCTGATGACAGCGGCAAGGG
CGAGACCACATAATGCAGCCAGGCCAGGGTCGCGTCATCTCTTCCTCCCA
CTCCTGCCCAGGGCGGCGAGCCACCGCCTTTTAATTTCTCCAACATTATT
ACTATTATTAATTCTAATTATACACGTTTCGAAACTAAACCGAACAACTG
AGAAAACAATTATTTAACAAGTTTATATGTACCGAGGGTAGTTGAAACAA
TGGTCCTACGCTGATTTTATCTACTCAATTTTACTTTGATAACTAAGATG
ATGATCGTATAAGCTACAGGTTATATGCATGCGGGCTAACTCAATTCCCA
GCCTGTGGGCAAGCAATTAAGAGTTCAGGGACTTCTCCAAATCCAAACAT
TTATACGCAGAAGAAACACACAACACAGAAACAAGAATAAAACCAATAAC
ACAAGAAACTCAAAAAAAAAAAAAAAAAA

LD40324.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656.c 1970 CG7656.c 524..1600 238..1314 5385 100 Plus
CG7656-RA 1753 CG7656-RA 524..1600 238..1314 5385 100 Plus
CG7656-RE 1768 CG7656-RE 533..1615 238..1314 5300 99.4 Plus
CG7656.c 1970 CG7656.c 146..390 1..245 1210 99.5 Plus
CG7656-RA 1753 CG7656-RA 146..390 1..245 1210 99.5 Plus
CG7656-RE 1768 CG7656-RE 155..399 1..245 1210 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15575733..15576525 1311..519 3965 100 Minus
chr3L 24539361 chr3L 15576933..15577216 521..238 1405 99.6 Minus
chr3L 24539361 chr3L 15577350..15577529 245..66 870 98.9 Minus
chr3L 24539361 chr3L 15577984..15578052 69..1 345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15585801..15586596 1314..519 3980 100 Minus
3L 28110227 3L 15587004..15587287 521..238 1420 100 Minus
3L 28110227 3L 15587421..15587600 245..66 870 98.9 Minus
3L 28110227 3L 15588055..15588123 69..1 345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15578901..15579696 1314..519 3980 100 Minus
3L 28103327 3L 15580104..15580387 521..238 1420 100 Minus
3L 28103327 3L 15580521..15580700 245..66 870 98.8 Minus
3L 28103327 3L 15581155..15581223 69..1 345 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:24:30 has no hits.

LD40324.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:25:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15577984..15578052 1..69 100   Minus
chr3L 15575733..15576269 775..1311 100 == Minus
chr3L 15576327..15576523 521..717 100 <- Minus
chr3L 15576934..15577209 245..520 99 <- Minus
chr3L 15577352..15577525 70..244 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:39 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 1..143 101..244 98 -> Plus
CG7656-RA 286..954 245..913 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 1..143 101..244 98 -> Plus
CG7656-RA 286..954 245..913 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:28:57 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 1..143 101..244 98 -> Plus
CG7656-RA 286..954 245..913 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:37 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RB 1..810 101..913 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:38:47 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 1..143 101..244 98 -> Plus
CG7656-RA 286..954 245..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:42 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 59..243 58..244 96 -> Plus
CG7656-RD 386..1209 245..1062 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 71..313 1..244 99 -> Plus
CG7656-RA 456..1522 245..1311 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:57 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 53..295 1..244 99 -> Plus
CG7656-RA 438..1504 245..1311 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:37 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RB 1..1308 1..1311 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:38:47 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 53..295 1..244 99 -> Plus
CG7656-RA 438..1504 245..1311 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15585804..15586594 521..1311 100 <- Minus
3L 15587005..15587280 245..520 100 <- Minus
3L 15587423..15587596 70..244 98 <- Minus
3L 15588055..15588123 1..69 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15585804..15586594 521..1311 100 <- Minus
3L 15587005..15587280 245..520 100 <- Minus
3L 15587423..15587596 70..244 98 <- Minus
3L 15588055..15588123 1..69 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:07 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15585804..15586594 521..1311 100 <- Minus
3L 15587005..15587280 245..520 100 <- Minus
3L 15587423..15587596 70..244 98 <- Minus
3L 15588055..15588123 1..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:57 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15580105..15580380 245..520 100 <- Minus
arm_3L 15580523..15580696 70..244 98 <- Minus
arm_3L 15581155..15581223 1..69 100   Minus
arm_3L 15578904..15579694 521..1311 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:43 Download gff for LD40324.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15578904..15579694 521..1311 100 <- Minus
3L 15580105..15580380 245..520 100 <- Minus
3L 15580523..15580696 70..244 98 <- Minus
3L 15581155..15581223 1..69 100   Minus

LD40324.pep Sequence

Translation from 100 to 912

> LD40324.pep
MTTAASTSQHATSSSTMMAGSGSLATSSSAAAPTTTPSSSAVRALAMKFP
HDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWN
PTQNVRTILLSVISLLNEPNTFSPANVDASVMYRRWRDSQDNEYPNIIRK
QALAANAEAKREGIVVPMTLEDYCLKPTRKPTTESGLDANFYDDDFDLET
EDDLPSDDDFDEDDDDDEDEDEDEDSATAPISKNNGGSSKCKNNGLVREA
AAAGADDAESADDSGKGETT*

LD40324.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10391-PA 297 GF10391-PA 19..297 1..270 1005 82.6 Plus
Dana\GF21720-PA 311 GF21720-PA 61..208 47..193 527 65.1 Plus
Dana\GF21159-PA 167 GF21159-PA 42..161 31..150 295 47.5 Plus
Dana\GF19999-PA 113 GF19999-PA 4..102 47..152 273 50.9 Plus
Dana\GF18145-PA 167 GF18145-PA 59..147 47..138 255 52.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13536-PA 265 GG13536-PA 1..265 1..270 1321 94.5 Plus
Dere\GG19056-PA 167 GG19056-PA 42..161 31..150 295 47.5 Plus
Dere\GG16305-PA 168 GG16305-PA 59..157 47..152 276 50.9 Plus
Dere\GG17023-PA 168 GG17023-PA 26..146 14..134 263 43 Plus
Dere\GG15578-PA 178 GG15578-PA 32..163 4..141 206 33.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14479-PA 324 GH14479-PA 95..324 47..270 847 79.3 Plus
Dgri\GH24823-PA 167 GH24823-PA 42..161 31..150 298 46.7 Plus
Dgri\GH22344-PA 170 GH22344-PA 61..159 47..152 274 50.9 Plus
Dgri\GH14044-PA 167 GH14044-PA 59..146 47..134 258 53.4 Plus
Dgri\GH14710-PA 176 GH14710-PA 30..162 4..144 208 35.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PF 317 CG7656-PF 1..317 1..270 1362 85.2 Plus
CG7656-PA 317 CG7656-PA 1..317 1..270 1362 85.2 Plus
CG7656-PE 319 CG7656-PE 1..319 1..270 1349 84.6 Plus
CG7656-PD 319 CG7656-PD 1..319 1..270 1349 84.6 Plus
Ubc7-PB 167 CG4443-PB 42..161 31..150 291 47.5 Plus
Ubc7-PA 167 CG4443-PA 42..161 31..150 291 47.5 Plus
CG40045-PC 132 CG40045-PC 12..121 36..152 280 47.9 Plus
CG40045-PD 167 CG40045-PD 60..156 49..152 276 51.9 Plus
CG40045-PA 168 CG40045-PA 61..157 49..152 276 51.9 Plus
Ubc87F-PA 168 CG9602-PA 61..146 49..134 259 55.8 Plus
CG40045-PB 97 CG40045-PB 1..86 60..152 237 51.6 Plus
Ubc6-PC 151 CG2013-PC 43..134 33..137 210 40 Plus
Ubc6-PA 151 CG2013-PA 43..134 33..137 210 40 Plus
vih-PA 178 CG10682-PA 69..163 31..141 200 38.7 Plus
lwr-PD 159 CG3018-PD 50..157 35..157 185 36.6 Plus
lwr-PC 159 CG3018-PC 50..157 35..157 185 36.6 Plus
lwr-PB 159 CG3018-PB 50..157 35..157 185 36.6 Plus
lwr-PA 159 CG3018-PA 50..157 35..157 185 36.6 Plus
eff-PC 147 CG7425-PC 40..147 33..153 184 30.6 Plus
eff-PB 147 CG7425-PB 40..147 33..153 184 30.6 Plus
eff-PA 147 CG7425-PA 40..147 33..153 184 30.6 Plus
ben-PE 151 CG18319-PE 42..130 33..134 178 33.3 Plus
ben-PD 151 CG18319-PD 42..130 33..134 178 33.3 Plus
ben-PB 151 CG18319-PB 42..130 33..134 178 33.3 Plus
ben-PC 151 CG18319-PC 42..130 33..134 178 33.3 Plus
ben-PA 151 CG18319-PA 42..130 33..134 178 33.3 Plus
CG3473-PB 151 CG3473-PB 42..130 33..134 167 32.4 Plus
CG3473-PA 151 CG3473-PA 42..130 33..134 167 32.4 Plus
Ubc4-PC 199 CG8284-PC 44..139 31..141 156 33 Plus
Ubc4-PB 199 CG8284-PB 44..139 31..141 156 33 Plus
Ubc4-PA 199 CG8284-PA 44..139 31..141 156 33 Plus
CG10862-PA 354 CG10862-PA 232..353 18..152 155 26.7 Plus
Ubc84D-PA 153 CG12799-PA 31..131 23..135 151 26.5 Plus
CG8188-PD 209 CG8188-PD 53..139 33..132 150 32 Plus
CG8188-PC 209 CG8188-PC 53..139 33..132 150 32 Plus
CG8188-PB 209 CG8188-PB 53..139 33..132 150 32 Plus
CG8188-PA 209 CG8188-PA 53..139 33..132 150 32 Plus
Ubc10-PA 154 CG5788-PA 27..124 19..128 148 24.5 Plus
CG2574-PA 239 CG2574-PA 113..196 45..141 147 33 Plus
CG5440-PC 169 CG5440-PC 54..157 27..143 143 27.4 Plus
CG5440-PB 169 CG5440-PB 54..157 27..143 143 27.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13630-PA 321 GI13630-PA 93..321 47..270 929 80.9 Plus
Dmoj\GI16154-PA 167 GI16154-PA 42..161 31..150 298 47.5 Plus
Dmoj\GI23981-PA 168 GI23981-PA 59..157 47..152 283 51.9 Plus
Dmoj\GI24418-PA 167 GI24418-PA 59..157 47..152 267 50 Plus
Dmoj\GI12257-PA 176 GI12257-PA 30..162 4..144 211 35.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25518-PA 259 GL25518-PA 1..259 1..270 971 80 Plus
Dper\GL18350-PA 167 GL18350-PA 42..161 31..150 292 46.7 Plus
Dper\GL12289-PA 170 GL12289-PA 61..159 47..152 280 51.9 Plus
Dper\GL24447-PA 167 GL24447-PA 59..146 47..134 259 53.4 Plus
Dper\GL22213-PA 151 GL22213-PA 42..134 32..137 202 39.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20506-PA 258 GA20506-PA 1..258 1..270 966 79.9 Plus
Dpse\GA18185-PA 167 GA18185-PA 42..161 31..150 292 46.7 Plus
Dpse\GA26259-PA 170 GA26259-PA 61..159 47..152 281 51.9 Plus
Dpse\GA21906-PA 167 GA21906-PA 59..146 47..134 259 53.4 Plus
Dpse\GA22561-PA 242 GA22561-PA 53..185 32..174 227 38.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24479-PA 271 GM24479-PA 1..271 1..270 1387 98.5 Plus
Dsec\GM23423-PA 168 GM23423-PA 59..157 47..152 276 50.9 Plus
Dsec\GM25907-PA 168 GM25907-PA 26..146 14..134 265 43.8 Plus
Dsec\GM25349-PA 177 GM25349-PA 31..162 4..141 207 33.8 Plus
Dsec\GM10669-PA 151 GM10669-PA 42..134 32..137 202 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12552-PA 271 GD12552-PA 1..271 1..270 1395 98.9 Plus
Dsim\GD24840-PA 167 GD24840-PA 42..161 31..150 284 45.8 Plus
Dsim\GD11958-PA 168 GD11958-PA 59..157 47..152 276 50.9 Plus
Dsim\GD20475-PA 168 GD20475-PA 26..146 14..134 265 43.8 Plus
Dsim\GD14382-PA 177 GD14382-PA 31..162 4..141 207 33.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13967-PA 318 GJ13967-PA 93..318 47..270 923 85.1 Plus
Dvir\GJ16432-PA 167 GJ16432-PA 42..161 31..150 299 47.5 Plus
Dvir\GJ11187-PA 168 GJ11187-PA 59..157 47..152 276 50.9 Plus
Dvir\GJ14277-PA 220 GJ14277-PA 112..200 47..138 268 53.3 Plus
Dvir\GJ11488-PA 176 GJ11488-PA 30..162 4..144 211 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20435-PA 322 GK20435-PA 96..322 47..270 881 83.2 Plus
Dwil\GK19931-PA 294 GK19931-PA 43..235 27..215 445 48.7 Plus
Dwil\GK16076-PA 167 GK16076-PA 42..161 31..150 288 46.7 Plus
Dwil\GK12909-PA 168 GK12909-PA 59..157 47..152 277 50.9 Plus
Dwil\GK13059-PA 167 GK13059-PA 59..147 47..138 259 52.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22254-PA 273 GE22254-PA 1..273 1..270 1363 97.1 Plus
Dyak\GE19830-PA 273 GE19830-PA 1..273 1..270 1363 97.1 Plus
Dyak\crl-PA 167 GE17278-PA 42..161 31..150 295 47.5 Plus
Dyak\GE15167-PA 168 GE15167-PA 59..157 47..152 276 50.9 Plus
Dyak\GE24416-PA 168 GE24416-PA 26..146 14..134 264 43 Plus

LD40324.hyp Sequence

Translation from 493 to 912

> LD40324.hyp
MYRRWRDSQDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTRKP
TTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATAPI
SKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETT*

LD40324.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PF 317 CG7656-PF 179..317 1..139 737 100 Plus
CG7656-PA 317 CG7656-PA 179..317 1..139 737 100 Plus
CG7656-PE 319 CG7656-PE 179..319 1..139 724 98.6 Plus
CG7656-PD 319 CG7656-PD 179..319 1..139 724 98.6 Plus