Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD40326.complete Sequence
1574 bp (1574 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069635.1
> LD40326.complete
CGGCCACACTATTACCGTGCGACAGATTTCATAATTCTCAAATCGGCGAG
GAAAGCACGAAAAAAAGGCCGTTTAGCAGCGTTTATAATGTCGGCGTCGG
AGCAGGGACCTAAAATCAAGTACGGGGAAAGCGCTCCGAAGCTAGACAAG
GCGCAGTTGCAGTTCATGAAGCTGATCGAGGAGCAGAACCTGGACCGCGT
GCAAAAGCTAAAGCGCATCCGCCGCAACAATCTACTGACCGCCGGCGCTT
TGGGTGTCTCCGTTTTGGCCATCTACGGCTACTCCATTTTTTCGGTGCAA
CAGGAGAAGTTCCTGGACGACTTCGAGGAGCCCAAGAAGGTGTCTTCCTA
GCTACTGTCCGCGTTAGTTATCCCTAGTTCGTAAGCGTTTTCTTCACTTT
ACAACAGTTTTACACTTTTTGAAGTCGTTGCACAACAGGATGGCCCAACC
CAGTGCCCGTGTGCTCCAAAGCGGCATGCGCCTGCCTCCAATGCCCACAA
TTCGGGAGCTGGTGAAGCTATACAGACTACAGGCCAGGAAACAGCTTAGC
CAGAACTTCCTCATGGACGAGCGGCTCACGGACAAGATAGTCAAGTCGGC
GGGACGCATCGATCCCCGGGATTTAGTTCTTGAGGTGGGTCCCGGGCCGG
GCGGTATCACGCGCTCGATTCTGCGTCGTCACCCACAGCGATTGTTGCTT
GTGGAGAAGGATCCGCGCTTCGGCGAAACACTGCAGTTGCTCAAGGAATG
CGCCAGTCCACTAAACATCCAGTTCGACATCCACTATGATGACATCCTGC
GCTTCAACATTGAGCAGCACATCCCGGACACCTCACAGCGGATCCATCTG
ATTGGCAACCTGCCGTTCGCCATATCCACTCGACTGTTGATCAATTGGCT
TGATGATTTGGCCGCCAGGCGTGGTGCTTTCCGGCGCATCGACACCTGTA
TGACTCTTACCTTCCAGCAAGAGGTGGCCGAGCGAATTTGTGCCCCTGTA
GGCGGCGAACAGCGCTGCCGGCTCTCGGTGATGTCGCAGGTGTGGACGGA
ACCCGTCATGAAGTTCACCATACCGGGCAAGGCGTTCGTTCCGAAACCAC
AGGTGGATGTGGGCGTCGTCAAGCTAATTCCCCTAAAGCGCCCTAAGACT
CAATTGCCGTTTCACCTAGTTGAGCGCGTAGTCCGTCACATCTTTAGCAT
GCGCCAGAAGTACTGTCGCCGAGGCTATGGCACCCTGCTTCCTCCAGAAG
ATCGCGAGGAGGTTGCTGAGAAGCTATTTCAGCGCGCCGAAGTACAGGAC
ACGCTGCGTCCCTTTGAACTAACTGTGGAGCAGTGCCTGAGGTTGGCGGA
AGTCTATTCGGAGCATCTGGTGACGCGACCCGAGGTGGCTGCCTATGATT
ACCGGGCGCCCAAGAATGTAGAGGTCCTTTAAAGCAACGATTTCACTCCT
GTTTATAAATATGGTAAAATGTATTTAATTAGTTGAGTAAACACAAGACT
CTAAAAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATTTAAAAAAAAAAAAAAAAAAAA
LD40326.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42630-RA | 1578 | CG42630-RA | 68..1578 | 1..1511 | 7555 | 100 | Plus |
mtTFB1-RA | 1578 | mtTFB1-RA | 68..1578 | 1..1511 | 7555 | 100 | Plus |
mtTFB1.a | 1502 | mtTFB1.a | 430..1502 | 440..1512 | 5365 | 100 | Plus |
mtTFB1.a | 1502 | mtTFB1.a | 68..429 | 1..362 | 1810 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 11700375..11701448 | 439..1512 | 5310 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 11699875..11700312 | 1..439 | 2100 | 99.1 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11709498..11710571 | 439..1512 | 5370 | 100 | Plus |
3L | 28110227 | 3L | 11708997..11709435 | 1..439 | 2195 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 11702598..11703671 | 439..1512 | 5370 | 100 | Plus |
3L | 28103327 | 3L | 11702097..11702535 | 1..439 | 2195 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 16:41:54 has no hits.
LD40326.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:14 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 11699875..11700312 | 1..439 | 99 | -> | Plus |
chr3L | 11700376..11701447 | 440..1511 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:41 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RD | 1..242 | 88..329 | 100 | == | Plus |
mtTFB1-RD | 243..1245 | 430..1432 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:13 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RA | 1..993 | 440..1432 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:20 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RA | 1..993 | 440..1432 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:34 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RD | 1..242 | 88..329 | 100 | == | Plus |
mtTFB1-RD | 243..1245 | 430..1432 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:52 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RA | 1..993 | 440..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:49 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RA | 68..1578 | 1..1511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:13 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42630-RA | 68..1578 | 1..1511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:20 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 19..1529 | 1..1511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:34 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mtTFB1-RA | 68..1578 | 1..1511 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:52 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccdc56-RA | 19..1529 | 1..1511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11708997..11709435 | 1..439 | 100 | -> | Plus |
3L | 11709499..11710570 | 440..1511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11708997..11709435 | 1..439 | 100 | -> | Plus |
3L | 11709499..11710570 | 440..1511 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11708997..11709435 | 1..439 | 100 | -> | Plus |
3L | 11709499..11710570 | 440..1511 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:20 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11702097..11702535 | 1..439 | 100 | -> | Plus |
arm_3L | 11702599..11703670 | 440..1511 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:06 Download gff for
LD40326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11702097..11702535 | 1..439 | 100 | -> | Plus |
3L | 11702599..11703670 | 440..1511 | 100 | | Plus |
LD40326.pep2 Sequence
Translation from 87 to 350
> LD40326.pep2
MSASEQGPKIKYGESAPKLDKAQLQFMKLIEEQNLDRVQKLKRIRRNNLL
TAGALGVSVLAIYGYSIFSVQQEKFLDDFEEPKKVSS*
LD40326.pep2 Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF25283-PA | 88 | GF25283-PA | 1..87 | 1..87 | 432 | 94.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15524-PA | 502 | GG15524-PA | 89..174 | 1..86 | 433 | 96.5 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15074-PA | 415 | GH15074-PA | 1..86 | 1..86 | 425 | 94.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccdc56-PA | 87 | CG42630-PA | 1..87 | 1..87 | 429 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI13722-PA | 413 | GI13722-PA | 1..86 | 1..86 | 426 | 94.2 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL16282-PA | 88 | GL16282-PA | 1..87 | 1..87 | 416 | 90.8 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23431-PA | 88 | GA23431-PA | 1..87 | 1..87 | 416 | 90.8 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25292-PA | 414 | GM25292-PA | 1..86 | 1..86 | 429 | 96.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14323-PA | 381 | GD14323-PA | 1..86 | 1..86 | 437 | 97.7 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14068-PA | 420 | GJ14068-PA | 1..86 | 1..86 | 427 | 94.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10483-PA | 87 | GK10483-PA | 2..86 | 4..87 | 402 | 91.8 | Plus |
LD40326.hyp Sequence
Translation from 439 to 1431
> LD40326.hyp
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*
LD40326.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-PA | 330 | CG42631-PA | 1..330 | 1..330 | 1705 | 100 | Plus |
CG11837-PA | 306 | CG11837-PA | 25..229 | 34..257 | 181 | 29.5 | Plus |
LD40326.pep Sequence
Translation from 439 to 1431
> LD40326.pep
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*
LD40326.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF25284-PA | 330 | GF25284-PA | 1..330 | 1..330 | 1530 | 86.4 | Plus |
Dana\GF16271-PA | 306 | GF16271-PA | 24..229 | 33..257 | 179 | 29.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15524-PA | 502 | GG15524-PA | 173..502 | 1..330 | 1708 | 97.3 | Plus |
Dere\GG11635-PA | 306 | GG11635-PA | 25..229 | 34..257 | 178 | 29.9 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15074-PA | 415 | GH15074-PA | 85..410 | 1..326 | 1449 | 80.4 | Plus |
Dgri\GH18676-PA | 306 | GH18676-PA | 25..208 | 34..235 | 175 | 30.7 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mtTFB1-PA | 330 | CG42631-PA | 1..330 | 1..330 | 1705 | 100 | Plus |
CG11837-PA | 306 | CG11837-PA | 25..229 | 34..257 | 181 | 29.5 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI13722-PA | 413 | GI13722-PA | 85..411 | 1..327 | 1450 | 81 | Plus |
Dmoj\GI24187-PA | 306 | GI24187-PA | 24..229 | 33..257 | 170 | 28 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL16283-PA | 337 | GL16283-PA | 1..329 | 1..329 | 1493 | 84.5 | Plus |
Dper\GL24250-PA | 306 | GL24250-PA | 25..208 | 34..235 | 178 | 30.2 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20255-PA | 337 | GA20255-PA | 1..329 | 1..329 | 1498 | 84.8 | Plus |
Dpse\GA11224-PA | 306 | GA11224-PA | 25..208 | 34..235 | 178 | 30.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25292-PA | 414 | GM25292-PA | 85..414 | 1..330 | 1726 | 98.2 | Plus |
Dsec\GM12757-PA | 306 | GM12757-PA | 25..208 | 34..235 | 177 | 30.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14323-PA | 381 | GD14323-PA | 85..381 | 1..330 | 1512 | 88.5 | Plus |
Dsim\GD21406-PA | 306 | GD21406-PA | 25..229 | 34..257 | 177 | 29.9 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ14068-PA | 420 | GJ14068-PA | 85..411 | 1..327 | 1451 | 79.5 | Plus |
Dvir\GJ10534-PA | 306 | GJ10534-PA | 24..208 | 33..235 | 174 | 29.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK10486-PA | 334 | GK10486-PA | 1..327 | 1..327 | 1406 | 79.5 | Plus |
Dwil\GK22567-PA | 306 | GK22567-PA | 25..208 | 34..235 | 188 | 31.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21840-PA | 207 | GE21840-PA | 1..207 | 124..330 | 1037 | 93.7 | Plus |
Dyak\GE14674-PA | 160 | GE14674-PA | 1..160 | 171..330 | 795 | 94.4 | Plus |
Dyak\GE23825-PA | 306 | GE23825-PA | 24..229 | 33..257 | 178 | 29.8 | Plus |