Clone LD40326 Report

Search the DGRC for LD40326

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:403
Well:26
Vector:pOT2
Associated Gene/TranscriptCcdc56-RA
Protein status:LD40326.pep2: gold LD40326.pep: gold
Preliminary Size:1621
Sequenced Size:1574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7319 2001-01-01 Release 2 assignment
CG7319 2001-11-29 Blastp of sequenced clone
CG7319 2003-01-01 Sim4 clustering to Release 3
mtTFB1 2008-04-29 Release 5.5 accounting
mtTFB1 2008-08-15 Release 5.9 accounting
mtTFB1 2008-12-18 5.12 accounting

Clone Sequence Records

LD40326.complete Sequence

1574 bp (1574 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069635.1

> LD40326.complete
CGGCCACACTATTACCGTGCGACAGATTTCATAATTCTCAAATCGGCGAG
GAAAGCACGAAAAAAAGGCCGTTTAGCAGCGTTTATAATGTCGGCGTCGG
AGCAGGGACCTAAAATCAAGTACGGGGAAAGCGCTCCGAAGCTAGACAAG
GCGCAGTTGCAGTTCATGAAGCTGATCGAGGAGCAGAACCTGGACCGCGT
GCAAAAGCTAAAGCGCATCCGCCGCAACAATCTACTGACCGCCGGCGCTT
TGGGTGTCTCCGTTTTGGCCATCTACGGCTACTCCATTTTTTCGGTGCAA
CAGGAGAAGTTCCTGGACGACTTCGAGGAGCCCAAGAAGGTGTCTTCCTA
GCTACTGTCCGCGTTAGTTATCCCTAGTTCGTAAGCGTTTTCTTCACTTT
ACAACAGTTTTACACTTTTTGAAGTCGTTGCACAACAGGATGGCCCAACC
CAGTGCCCGTGTGCTCCAAAGCGGCATGCGCCTGCCTCCAATGCCCACAA
TTCGGGAGCTGGTGAAGCTATACAGACTACAGGCCAGGAAACAGCTTAGC
CAGAACTTCCTCATGGACGAGCGGCTCACGGACAAGATAGTCAAGTCGGC
GGGACGCATCGATCCCCGGGATTTAGTTCTTGAGGTGGGTCCCGGGCCGG
GCGGTATCACGCGCTCGATTCTGCGTCGTCACCCACAGCGATTGTTGCTT
GTGGAGAAGGATCCGCGCTTCGGCGAAACACTGCAGTTGCTCAAGGAATG
CGCCAGTCCACTAAACATCCAGTTCGACATCCACTATGATGACATCCTGC
GCTTCAACATTGAGCAGCACATCCCGGACACCTCACAGCGGATCCATCTG
ATTGGCAACCTGCCGTTCGCCATATCCACTCGACTGTTGATCAATTGGCT
TGATGATTTGGCCGCCAGGCGTGGTGCTTTCCGGCGCATCGACACCTGTA
TGACTCTTACCTTCCAGCAAGAGGTGGCCGAGCGAATTTGTGCCCCTGTA
GGCGGCGAACAGCGCTGCCGGCTCTCGGTGATGTCGCAGGTGTGGACGGA
ACCCGTCATGAAGTTCACCATACCGGGCAAGGCGTTCGTTCCGAAACCAC
AGGTGGATGTGGGCGTCGTCAAGCTAATTCCCCTAAAGCGCCCTAAGACT
CAATTGCCGTTTCACCTAGTTGAGCGCGTAGTCCGTCACATCTTTAGCAT
GCGCCAGAAGTACTGTCGCCGAGGCTATGGCACCCTGCTTCCTCCAGAAG
ATCGCGAGGAGGTTGCTGAGAAGCTATTTCAGCGCGCCGAAGTACAGGAC
ACGCTGCGTCCCTTTGAACTAACTGTGGAGCAGTGCCTGAGGTTGGCGGA
AGTCTATTCGGAGCATCTGGTGACGCGACCCGAGGTGGCTGCCTATGATT
ACCGGGCGCCCAAGAATGTAGAGGTCCTTTAAAGCAACGATTTCACTCCT
GTTTATAAATATGGTAAAATGTATTTAATTAGTTGAGTAAACACAAGACT
CTAAAAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATTTAAAAAAAAAAAAAAAAAAAA

LD40326.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG42630-RA 1578 CG42630-RA 68..1578 1..1511 7555 100 Plus
mtTFB1-RA 1578 mtTFB1-RA 68..1578 1..1511 7555 100 Plus
mtTFB1.a 1502 mtTFB1.a 430..1502 440..1512 5365 100 Plus
mtTFB1.a 1502 mtTFB1.a 68..429 1..362 1810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11700375..11701448 439..1512 5310 99.6 Plus
chr3L 24539361 chr3L 11699875..11700312 1..439 2100 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11709498..11710571 439..1512 5370 100 Plus
3L 28110227 3L 11708997..11709435 1..439 2195 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11702598..11703671 439..1512 5370 100 Plus
3L 28103327 3L 11702097..11702535 1..439 2195 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:41:54 has no hits.

LD40326.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:43:14 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11699875..11700312 1..439 99 -> Plus
chr3L 11700376..11701447 440..1511 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:41 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RD 1..242 88..329 100 == Plus
mtTFB1-RD 243..1245 430..1432 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:13 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RA 1..993 440..1432 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:20 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RA 1..993 440..1432 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:34 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RD 1..242 88..329 100 == Plus
mtTFB1-RD 243..1245 430..1432 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:52 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RA 1..993 440..1432 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:49 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RA 68..1578 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:13 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
CG42630-RA 68..1578 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:20 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 19..1529 1..1511 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:34 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
mtTFB1-RA 68..1578 1..1511 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:52 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
Ccdc56-RA 19..1529 1..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11708997..11709435 1..439 100 -> Plus
3L 11709499..11710570 440..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11708997..11709435 1..439 100 -> Plus
3L 11709499..11710570 440..1511 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:43:14 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11708997..11709435 1..439 100 -> Plus
3L 11709499..11710570 440..1511 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:20 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11702097..11702535 1..439 100 -> Plus
arm_3L 11702599..11703670 440..1511 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:25:06 Download gff for LD40326.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11702097..11702535 1..439 100 -> Plus
3L 11702599..11703670 440..1511 100   Plus

LD40326.pep2 Sequence

Translation from 87 to 350

> LD40326.pep2
MSASEQGPKIKYGESAPKLDKAQLQFMKLIEEQNLDRVQKLKRIRRNNLL
TAGALGVSVLAIYGYSIFSVQQEKFLDDFEEPKKVSS*

LD40326.pep2 Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25283-PA 88 GF25283-PA 1..87 1..87 432 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15524-PA 502 GG15524-PA 89..174 1..86 433 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15074-PA 415 GH15074-PA 1..86 1..86 425 94.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ccdc56-PA 87 CG42630-PA 1..87 1..87 429 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13722-PA 413 GI13722-PA 1..86 1..86 426 94.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16282-PA 88 GL16282-PA 1..87 1..87 416 90.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23431-PA 88 GA23431-PA 1..87 1..87 416 90.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25292-PA 414 GM25292-PA 1..86 1..86 429 96.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14323-PA 381 GD14323-PA 1..86 1..86 437 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14068-PA 420 GJ14068-PA 1..86 1..86 427 94.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10483-PA 87 GK10483-PA 2..86 4..87 402 91.8 Plus

LD40326.hyp Sequence

Translation from 439 to 1431

> LD40326.hyp
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*

LD40326.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-PA 330 CG42631-PA 1..330 1..330 1705 100 Plus
CG11837-PA 306 CG11837-PA 25..229 34..257 181 29.5 Plus

LD40326.pep Sequence

Translation from 439 to 1431

> LD40326.pep
MAQPSARVLQSGMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI
VKSAGRIDPRDLVLEVGPGPGGITRSILRRHPQRLLLVEKDPRFGETLQL
LKECASPLNIQFDIHYDDILRFNIEQHIPDTSQRIHLIGNLPFAISTRLL
INWLDDLAARRGAFRRIDTCMTLTFQQEVAERICAPVGGEQRCRLSVMSQ
VWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLVERVVRH
IFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCL
RLAEVYSEHLVTRPEVAAYDYRAPKNVEVL*

LD40326.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25284-PA 330 GF25284-PA 1..330 1..330 1530 86.4 Plus
Dana\GF16271-PA 306 GF16271-PA 24..229 33..257 179 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15524-PA 502 GG15524-PA 173..502 1..330 1708 97.3 Plus
Dere\GG11635-PA 306 GG11635-PA 25..229 34..257 178 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15074-PA 415 GH15074-PA 85..410 1..326 1449 80.4 Plus
Dgri\GH18676-PA 306 GH18676-PA 25..208 34..235 175 30.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
mtTFB1-PA 330 CG42631-PA 1..330 1..330 1705 100 Plus
CG11837-PA 306 CG11837-PA 25..229 34..257 181 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13722-PA 413 GI13722-PA 85..411 1..327 1450 81 Plus
Dmoj\GI24187-PA 306 GI24187-PA 24..229 33..257 170 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16283-PA 337 GL16283-PA 1..329 1..329 1493 84.5 Plus
Dper\GL24250-PA 306 GL24250-PA 25..208 34..235 178 30.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20255-PA 337 GA20255-PA 1..329 1..329 1498 84.8 Plus
Dpse\GA11224-PA 306 GA11224-PA 25..208 34..235 178 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25292-PA 414 GM25292-PA 85..414 1..330 1726 98.2 Plus
Dsec\GM12757-PA 306 GM12757-PA 25..208 34..235 177 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14323-PA 381 GD14323-PA 85..381 1..330 1512 88.5 Plus
Dsim\GD21406-PA 306 GD21406-PA 25..229 34..257 177 29.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14068-PA 420 GJ14068-PA 85..411 1..327 1451 79.5 Plus
Dvir\GJ10534-PA 306 GJ10534-PA 24..208 33..235 174 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10486-PA 334 GK10486-PA 1..327 1..327 1406 79.5 Plus
Dwil\GK22567-PA 306 GK22567-PA 25..208 34..235 188 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21840-PA 207 GE21840-PA 1..207 124..330 1037 93.7 Plus
Dyak\GE14674-PA 160 GE14674-PA 1..160 171..330 795 94.4 Plus
Dyak\GE23825-PA 306 GE23825-PA 24..229 33..257 178 29.8 Plus