Clone LD40339 Report

Search the DGRC for LD40339

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:403
Well:39
Vector:pOT2
Associated Gene/Transcriptscny-RB
Protein status:LD40339.pep: gold
Preliminary Size:3408
Sequenced Size:3515

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5505 2001-01-01 Release 2 assignment
CG5505 2001-07-04 Blastp of sequenced clone
CG5505 2003-01-01 Sim4 clustering to Release 3
Usp36 2008-04-29 Release 5.5 accounting
Usp36 2008-08-15 Release 5.9 accounting
Usp36 2008-12-18 5.12 accounting

Clone Sequence Records

LD40339.complete Sequence

3515 bp (3515 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051916

> LD40339.complete
CTGTGAAAATATTTTCAGATAAAATCTGGTGATATCACATTCTGTAACGA
TGTTCAAAGAATTGTATTTCAAAATCTAGTACTGGAAATTTTTTTCGGCG
TATACTTTGTGTTCAAGTTTCTTTGTTCAATAGAATAGCTATCTTAATGC
TGCACAGTCCGGTGCCTAGGTACAACAAATGTGTACCCTTTCCAACACTG
CGAACAGGTGATGGAAGCGCGATTGTGTGTCAGCAGTTTCCACAGCGAGC
ACTGCTCGTTTTATTTATATTTCATAGCAGCGCGGATCAAGTGACTTAAT
CTGCAGAAGGGAATTCTTCCAATAAATGCATTATGACTGTGATAATGGTG
GACGGGTTCGCCCTGTGGCTGCTCTACAAGCTGTTCCTGTCTCCCTGCTG
CCTTCTCCTGTGGCACGTGCTTAAACTGTCTACCGTCCTCTTTACCTTTG
CAGACAATAACGGCGCCCGCAAGCAAGCGGAGCACCCGAACAATCAGTCG
CACCACATCAACCACCACAATCATCAGCATCCGACAAGCAATCCCAATGA
GCTGCCCAAGCCGAAGAGGGTCCTCTATCCGCGGGAGAACATACGCATTG
GCTGGAAGCAGTCGGAGCGCAAATGGCAGGTGGGCACGGGCATGATCAAT
GTGGGCAACACCTGCTACCTCAACTCAACGCTTCAGGCGCTCCTGCACAT
ACCCGCCCTGGCCAATTGGCTCGTTTCGGAGCAGGCGCATCTGGCTGACT
GCAATGTGGCCGAACCTGGCAGCGGTTGCATCATTTGCGCCATGACCAAA
ACACTTTTGGCCACCCAAAGCAATCAGTCGGCCGTCAGACCCTTCCTCAT
CTACTCGAAGCTAAAGCAGATCTGCAAACACATGGTCGTTGGTCGCCAAG
AGGATGCGCACGAGTTCCTGCGCTTCCTGGTCGAGGCCATGGAGCGGGCG
TATTTGATGCGGTTTCGTAACTACAAAGAGCTGGATCAGTTGGTTAAGGA
GACCACGCCGCTGGGACAGATCTTTGGCGGCTATCTGCGCAGCGAGGTGC
GCTGTCTGAGCTGCAACCATGTGTCCATTACGTTTCAGCACTTCCAGGAT
CTGTTGCTCGACATCCGCAAGGCAGACTCCTTGGAGGATGCTTTCGAGGG
ACACTTTTCTCGCGAACGGCTAGAGGATATGGGCTACAAGTGCGAGGGAT
GCAAGAAGAAGGTATCTGCCACAAAGCAATTCTCTTTGGAGCGTGCCCCA
ATCACGCTTTGTATACAGCTGAAGCGATTCTCCATGATCGGCAACAAACT
GACCAAGCAGATTTCCTTCAAGTCACGCATAGATTTGAGCAAATACGCAG
CCCGTTCACAAGCAGCTCAGGCTCAACCGCTCACCTATCGCCTGGTGTCG
ATGGTCACTCACTTGGGGGCGTCCCAGCACTGCGGTCACTACACGGCCAT
TGGCTCCACGGATACGGGCAGCTTTTACAACTTCGACGACAGCTACGTGC
GGCCAATCGCAATGCACAGTGTGTGCAACACAAATGCCTATATAATGTTT
TTCGAACTGGACCTCTCACAGGCTGCCAGTCCGGCGGCCAACAGGCCCAA
TGGAGTGCGTTTGACCAACGGACACAGCACAACGCCAGTGCCGGCGGCGA
CTGTGTCTTCGCCTTCACCAACGCGTTTCATTGGTCCTCAACTGCCGGCG
GGTGGAGCAAACGGTTACACTAATGGAAATGCCCAGAAAACCGCCATCCA
GTTCAAGCAACAAAACCAGCAAAGTCCACAGAACGGACTCCAGCTGGGTA
CCGGAAAGTTTCAGGACACTGCGAAGCCTCCACTGGTTGGCGCTCACGCT
AAAGGCGAAGCTACTTCAGCTCCCACTGCAAATGGTAACAAAAGTTCCTC
CCCAAGCAGCAACAGCAGCAGCAACCATAAATCAATAAACCAGCAACAAT
ATCTGCCAATTTCCTCGGATGATGAAGACATCGAGGATGAGATGAAGCCC
AGACCAACGACAGCCCAGCTACCGAGCATGCCCAATATGACGGAGAATCA
TACGGAGCCTAAGGCAAAGTCTCCTGTAAAGATTCAAGTAAAGACTCCCG
TCAAAACGCCACTGAAAAGTCTTGTGCCCTACGAATCAGCATCTGAGGAG
GAGGAGGCGCCTCTACCGAATCCCCGCAAGCGTCCAAGTGGGGAGGATTC
TAGCGAGTCGGACCAAGAGTCTGGCCAGACCAATGGTCACAGTAAGACCA
ATGGCAGCCACACCAACGGCTCAGCCTCGTCATCGGTTCACGTTAACAAC
AGCAAACAAAAGACTGATGCCATAGACGAGATATTCAAGAGCCTAAAAAA
GTCCGCAGACAGTGATGAGGACGACGATGAGGAGGAGCCCAGCATTCAGC
TAACGAATGGCTGGCACCCACAGAAGCAATCACAGTCTCAAAGCAAAGCA
CCACCATCGCCAAAGACGCCACCCTCGCCAGCGGTCATCAAATCGAAAAC
GGGTATCTGGAAAGTTACGCGTAACGATGAGGTCGATGCCATCGAAGATG
ATGTTGACGTCGTGGTGGTGGAGGGATCGCCGGTGAAAATTCCGACGCCG
AACAAGAACCATCGCAATCCCTTCTCGAGTAGCAAGCCCTCCACGGACTC
GCCCGCAACGCCAGGCGCCAAGCGCCAAAAGTTGCTCAACGGCAGTGCGC
TCAAGTCGCACCAGCAGCCAAGGGTGGGCAATGGCTACCAGAGCAATGCC
ACCTCGAATGGGAGCACCATCAATGAGCTGCTGAAGCAATCGTATCGTGG
ATACGGCTCCCCCGTGCTCAGTTGGAATGGCAAGCCCGCGGAGCTCGAAA
AGGAGCTACTGGTGGATGCGCGTGAGCAGCGGCAGCGGGACATCGACGAC
GACGAAGAGAACGAGATGGATCGTGGACGTCAGCGGAAGGTGAAGTCCGG
TTCGGCTAAGGGAAACAATGCCAGCAACAGCACGCCCGGGTACAATCCAT
TCCAGGAGTACGAGGGCCAGAAGCGCTGGAACAAGAACGGCGGAGGTGGA
GGATTTCCGCGATTCTACAATCAGAACTATCGCCAGAACTTCCAGCAGCG
CAACAAGTTCAAGTTCAACCGCTTCGGAGGACCAGGCAGCGCCAAGTTCC
AGCAGCAGCGAGCCCTGCAACGACATCTGTCCGCCGGCGGTGGCTTCAGT
CGGCGACAACCGTCGGCGCAGCAGCAGCAGCAAACCTAACTGGATGCGGA
TAGGCGAGGGTCAGGAGAAAGAGATGACGCCGATGCGACTGCGGCGTGTG
CATTTGTTATTGGATTTCAATTTCGCATGAGTTTTGTAAACGTTTTTTAA
CTGCTGATGATGAACATATTAGAAATAGGAGTAGGCGTAGGACTGTAAGC
TATAAGCTAGAACATAATTGTTGCCTCCCAAAATCATCCCCAACCTTCAC
CGAAGCACACAGTCCCATTAGAAACTAAGGCTATCATTAAGTACGATAAA
AAAAAAAAAAAAAAA

LD40339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
scny-RB 4116 scny-RB 165..3674 1..3510 17535 99.9 Plus
scny-RE 3656 scny-RE 1..2855 1..2855 14275 100 Plus
scny.a 4115 scny.a 1..2855 1..2855 14275 100 Plus
scny-RE 3656 scny-RE 2996..3651 2855..3510 3265 99.8 Plus
scny.a 4115 scny.a 3456..4110 2856..3510 3260 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5764953..5766598 1210..2855 8095 99.5 Plus
chr3L 24539361 chr3L 5763687..5764900 1..1214 6025 99.8 Plus
chr3L 24539361 chr3L 5767711..5768354 2854..3497 3175 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5772431..5774076 1210..2855 8230 100 Plus
3L 28110227 3L 5771165..5772378 1..1214 6070 100 Plus
3L 28110227 3L 5775187..5775843 2854..3510 3270 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5765531..5767176 1210..2855 8230 100 Plus
3L 28103327 3L 5764265..5765478 1..1214 6070 100 Plus
3L 28103327 3L 5768287..5768943 2854..3510 3270 99.8 Plus
Blast to na_te.dros performed 2019-03-16 19:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2415 1846..1956 144 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6851 1857..1956 137 64.4 Plus
roo 9092 roo DM_ROO 9092bp 1057..1147 1870..1958 134 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2484 1857..2014 130 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6889 1881..2024 128 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1508..1619 1847..1954 127 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1050..1153 1823..1930 126 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6534..6768 1710..1948 122 56.1 Plus
BS 5142 BS BS 5142bp 2041..2129 1860..1948 120 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2594..2757 1857..2017 119 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6789 1885..1948 119 69.2 Plus

LD40339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:00:35 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5763687..5764897 1..1211 99 -> Plus
chr3L 5764955..5766598 1212..2855 99 -> Plus
chr3L 5767713..5768354 2856..3497 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:42 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
Usp36-RB 1..2907 333..3239 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:57 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..2907 333..3239 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:50 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..2907 333..3239 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:27 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
Usp36-RB 1..2907 333..3239 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:49:19 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..2907 333..3239 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:25 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
Usp36-RB 1..3497 1..3497 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:57 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..3497 1..3497 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:50 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..3497 1..3497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:27 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
Usp36-RB 1..3497 1..3497 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:19 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
scny-RB 1..3497 1..3497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:35 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5771165..5772375 1..1211 100 -> Plus
3L 5772433..5774076 1212..2855 100 -> Plus
3L 5775189..5775830 2856..3497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:35 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5771165..5772375 1..1211 100 -> Plus
3L 5772433..5774076 1212..2855 100 -> Plus
3L 5775189..5775830 2856..3497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:35 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5771165..5772375 1..1211 100 -> Plus
3L 5772433..5774076 1212..2855 100 -> Plus
3L 5775189..5775830 2856..3497 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:50 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5764265..5765475 1..1211 100 -> Plus
arm_3L 5765533..5767176 1212..2855 100 -> Plus
arm_3L 5768289..5768930 2856..3497 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:31 Download gff for LD40339.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5764265..5765475 1..1211 100 -> Plus
3L 5765533..5767176 1212..2855 100 -> Plus
3L 5768289..5768930 2856..3497 100   Plus

LD40339.pep Sequence

Translation from 332 to 3238

> LD40339.pep
MTVIMVDGFALWLLYKLFLSPCCLLLWHVLKLSTVLFTFADNNGARKQAE
HPNNQSHHINHHNHQHPTSNPNELPKPKRVLYPRENIRIGWKQSERKWQV
GTGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVAEPGSGCI
ICAMTKTLLATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLV
EAMERAYLMRFRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSIT
FQHFQDLLLDIRKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQF
SLERAPITLCIQLKRFSMIGNKLTKQISFKSRIDLSKYAARSQAAQAQPL
TYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSVCNT
NAYIMFFELDLSQAASPAANRPNGVRLTNGHSTTPVPAATVSSPSPTRFI
GPQLPAGGANGYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDTAKPP
LVGAHAKGEATSAPTANGNKSSSPSSNSSSNHKSINQQQYLPISSDDEDI
EDEMKPRPTTAQLPSMPNMTENHTEPKAKSPVKIQVKTPVKTPLKSLVPY
ESASEEEEAPLPNPRKRPSGEDSSESDQESGQTNGHSKTNGSHTNGSASS
SVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQKQS
QSQSKAPPSPKTPPSPAVIKSKTGIWKVTRNDEVDAIEDDVDVVVVEGSP
VKIPTPNKNHRNPFSSSKPSTDSPATPGAKRQKLLNGSALKSHQQPRVGN
GYQSNATSNGSTINELLKQSYRGYGSPVLSWNGKPAELEKELLVDAREQR
QRDIDDDEENEMDRGRQRKVKSGSAKGNNASNSTPGYNPFQEYEGQKRWN
KNGGGGGFPRFYNQNYRQNFQQRNKFKFNRFGGPGSAKFQQQRALQRHLS
AGGGFSRRQPSAQQQQQT*

LD40339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23992-PA 1091 GF23992-PA 119..1080 41..961 3172 69.7 Plus
Dana\GF23156-PA 899 GF23156-PA 566..889 102..407 320 28.3 Plus
Dana\GF10813-PA 668 GF10813-PA 331..660 103..407 293 26.8 Plus
Dana\GF21001-PA 1296 GF21001-PA 964..1294 95..408 253 25.9 Plus
Dana\GF13485-PA 981 GF13485-PA 301..531 227..408 184 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15285-PA 1085 GG15285-PA 112..1078 41..962 3939 86.8 Plus
Dere\GG24410-PA 895 GG24410-PA 562..885 102..407 326 28.6 Plus
Dere\GG15734-PA 496 GG15734-PA 159..489 103..408 277 26 Plus
Dere\GG19743-PA 1414 GG19743-PA 1090..1412 103..408 261 26.2 Plus
Dere\GG11165-PA 364 GG11165-PA 25..336 103..397 238 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16215-PA 1240 GH16215-PA 159..1033 58..841 2230 57 Plus
Dgri\GH16215-PA 1240 GH16215-PA 1108..1227 841..958 349 70.2 Plus
Dgri\GH18183-PA 901 GH18183-PA 574..890 102..407 295 27.8 Plus
Dgri\GH18640-PA 717 GH18640-PA 348..709 72..407 288 25.7 Plus
Dgri\GH17708-PA 847 GH17708-PA 505..845 87..408 262 27.1 Plus
Dgri\GH17103-PA 241 GH17103-PA 43..237 227..411 221 29.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
scny-PB 968 CG5505-PB 1..968 1..968 5107 100 Plus
scny-PC 948 CG5505-PC 21..948 41..968 4894 100 Plus
scny-PD 1038 CG5505-PD 111..1038 41..968 4894 100 Plus
scny-PJ 906 CG5505-PJ 1..841 1..841 4424 100 Plus
scny-PH 976 CG5505-PH 111..911 41..841 4211 100 Plus
scny-PG 976 CG5505-PG 111..911 41..841 4211 100 Plus
scny-PI 886 CG5505-PI 21..821 41..841 4211 100 Plus
Usp8-PA 896 CG5798-PA 517..886 67..407 317 28.3 Plus
Usp8-PB 367 CG5798-PB 34..357 102..407 316 28.6 Plus
not-PC 496 CG4166-PC 159..488 103..407 297 25.7 Plus
not-PB 496 CG4166-PB 159..488 103..407 297 25.7 Plus
Usp2-PK 315 CG14619-PK 74..313 189..408 197 27.3 Plus
DUBAI-PA 852 CG8830-PA 530..740 215..409 188 27.7 Plus
DUBAI-PB 852 CG8830-PB 530..740 215..409 188 27.7 Plus
Usp12-46-PB 424 CG7023-PB 220..396 223..397 181 29.4 Plus
Nopp140-PF 685 CG7421-PF 236..606 437..801 171 21.8 Plus
puf-PE 2832 CG5794-PE 2003..2247 91..346 169 24 Plus
puf-PF 3912 CG5794-PF 2003..2247 91..346 169 24 Plus
puf-PD 3912 CG5794-PD 2003..2247 91..346 169 24 Plus
puf-PI 3921 CG5794-PI 2003..2247 91..346 169 24 Plus
puf-PG 3921 CG5794-PG 2003..2247 91..346 169 24 Plus
puf-PH 3930 CG5794-PH 2003..2247 91..346 169 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13361-PA 1185 GI13361-PA 147..1170 40..959 2787 58.6 Plus
Dmoj\GI10137-PA 908 GI10137-PA 574..897 102..407 331 29.5 Plus
Dmoj\GI11709-PA 710 GI11709-PA 372..702 103..407 286 26.9 Plus
Dmoj\GI15450-PA 1158 GI15450-PA 819..1156 90..408 275 26.9 Plus
Dmoj\GI11427-PA 849 GI11427-PA 433..800 103..407 258 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16307-PA 530 GL16307-PA 123..526 42..458 1801 81.9 Plus
Dper\GL16308-PA 451 GL16308-PA 1..441 566..962 1054 61.3 Plus
Dper\GL12603-PA 901 GL12603-PA 563..886 102..407 333 30 Plus
Dper\GL16888-PA 1195 GL16888-PA 790..1158 103..407 272 27.3 Plus
Dper\GL13296-PA 820 GL13296-PA 478..818 85..408 260 25.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18934-PA 1059 GA18934-PA 122..1047 42..962 3024 71.1 Plus
Dpse\GA19137-PA 901 GA19137-PA 563..886 102..407 332 30 Plus
Dpse\GA18001-PA 494 GA18001-PA 141..487 74..408 278 26.6 Plus
Dpse\GA16935-PA 1717 GA16935-PA 1312..1680 103..407 275 27.3 Plus
Dpse\GA19137-PB 328 GA19137-PB 1..313 113..407 268 28.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14719-PA 1059 GM14719-PA 111..1059 41..968 4013 88.4 Plus
Dsec\GM15069-PA 896 GM15069-PA 563..886 102..407 326 28.6 Plus
Dsec\GM11729-PA 1022 GM11729-PA 675..1020 84..408 258 25.9 Plus
Dsec\GM14932-PA 192 GM14932-PA 2..184 235..407 196 28.6 Plus
Dsec\GM26467-PA 424 GM26467-PA 220..396 223..397 182 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13899-PA 988 GD13899-PA 21..988 41..968 4114 90.2 Plus
Dsim\GD19401-PA 896 GD19401-PA 563..886 102..407 327 28.6 Plus
Dsim\GD12336-PA 496 GD12336-PA 159..489 103..408 277 26.5 Plus
Dsim\GD17542-PA 398 GD17542-PA 74..396 103..408 239 26.9 Plus
Dsim\GD20983-PA 364 GD20983-PA 25..336 103..397 238 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13192-PA 1214 GJ13192-PA 154..1196 64..958 2577 57.3 Plus
Dvir\GJ23355-PA 906 GJ23355-PA 572..895 102..407 317 28.3 Plus
Dvir\GJ11383-PA 704 GJ11383-PA 365..696 103..407 293 26.6 Plus
Dvir\GJ19166-PA 938 GJ19166-PA 595..936 86..408 265 26 Plus
Dvir\GJ13624-PA 1601 GJ13624-PA 1188..1556 103..407 265 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17299-PA 1311 GK17299-PA 991..1299 718..958 564 47.3 Plus
Dwil\GK12180-PA 925 GK12180-PA 591..914 102..407 322 28 Plus
Dwil\GK17362-PA 1652 GK17362-PA 1235..1608 103..407 255 27.4 Plus
Dwil\GK16418-PA 1396 GK16418-PA 1069..1394 103..408 224 25.5 Plus
Dwil\GK11483-PA 718 GK11483-PA 520..710 227..407 204 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21508-PA 1082 GE21508-PA 112..1075 41..962 3984 88.5 Plus
Dyak\GE25711-PA 895 GE25711-PA 514..885 65..407 322 27.4 Plus
Dyak\GE22066-PA 679 GE22066-PA 342..671 103..407 287 26.6 Plus
Dyak\GE17938-PA 1409 GE17938-PA 1085..1407 103..408 251 26.2 Plus
Dyak\GE10332-PA 364 GE10332-PA 25..336 103..397 236 27.2 Plus

LD40339.hyp Sequence

Translation from 332 to 3238

> LD40339.hyp
MTVIMVDGFALWLLYKLFLSPCCLLLWHVLKLSTVLFTFADNNGARKQAE
HPNNQSHHINHHNHQHPTSNPNELPKPKRVLYPRENIRIGWKQSERKWQV
GTGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVAEPGSGCI
ICAMTKTLLATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLV
EAMERAYLMRFRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSIT
FQHFQDLLLDIRKADSLEDAFEGHFSRERLEDMGYKCEGCKKKVSATKQF
SLERAPITLCIQLKRFSMIGNKLTKQISFKSRIDLSKYAARSQAAQAQPL
TYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSVCNT
NAYIMFFELDLSQAASPAANRPNGVRLTNGHSTTPVPAATVSSPSPTRFI
GPQLPAGGANGYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDTAKPP
LVGAHAKGEATSAPTANGNKSSSPSSNSSSNHKSINQQQYLPISSDDEDI
EDEMKPRPTTAQLPSMPNMTENHTEPKAKSPVKIQVKTPVKTPLKSLVPY
ESASEEEEAPLPNPRKRPSGEDSSESDQESGQTNGHSKTNGSHTNGSASS
SVHVNNSKQKTDAIDEIFKSLKKSADSDEDDDEEEPSIQLTNGWHPQKQS
QSQSKAPPSPKTPPSPAVIKSKTGIWKVTRNDEVDAIEDDVDVVVVEGSP
VKIPTPNKNHRNPFSSSKPSTDSPATPGAKRQKLLNGSALKSHQQPRVGN
GYQSNATSNGSTINELLKQSYRGYGSPVLSWNGKPAELEKELLVDAREQR
QRDIDDDEENEMDRGRQRKVKSGSAKGNNASNSTPGYNPFQEYEGQKRWN
KNGGGGGFPRFYNQNYRQNFQQRNKFKFNRFGGPGSAKFQQQRALQRHLS
AGGGFSRRQPSAQQQQQT*

LD40339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
scny-PB 968 CG5505-PB 1..968 1..968 5107 100 Plus
scny-PC 948 CG5505-PC 21..948 41..968 4894 100 Plus
scny-PD 1038 CG5505-PD 111..1038 41..968 4894 100 Plus
scny-PJ 906 CG5505-PJ 1..841 1..841 4424 100 Plus
scny-PH 976 CG5505-PH 111..911 41..841 4211 100 Plus