Clone LD40415 Report

Search the DGRC for LD40415

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:404
Well:15
Vector:pOT2
Associated Gene/TranscriptCG14005-RA
Protein status:LD40415.pep: gold
Preliminary Size:1516
Sequenced Size:1389

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14005 2001-01-01 Release 2 assignment
CG14005 2001-11-29 Blastp of sequenced clone
CG14005 2003-01-01 Sim4 clustering to Release 3
CG14005 2008-04-29 Release 5.5 accounting
CG14005 2008-08-15 Release 5.9 accounting
CG14005 2008-12-18 5.12 accounting

Clone Sequence Records

LD40415.complete Sequence

1389 bp (1389 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069636

> LD40415.complete
CCTTGGTCACGTACGAAAATGTTTGGATTATAACGATTCCACAAAATTGA
AATTAGACCGGAATATGAGCGGCCAGAAGCACCTGCGATTGCGCTACTAC
ACGTCGCTGGAGGAGGCCATGCTACTGCGGCTGTGGCGCGAGCACCTGCA
TGCCATACCCTCCTACACGGACAACCTGCCCATTTTCCGGGAAATCGCGC
ACGGCCTGCAGCAGAACGGAGTTCGGCTCAATAAGCAGGAGGCTCGCCGG
CGCATCAACAGCTACCGCAACAAGTATTTGAACGATCGCAATCGCGTGGG
GGGCAATGCGAACTTCGCGAAGGATTGGCGTCTCTACGCGCTGATCGATT
GCCTCTTCTGTCCTGCCTGGCCGTCGTCCGCCCTCTTCCATTTCCGCAAT
GTGCTGGAGACGATCCGTGCGACAGCACGTGTGGATTTGCCCGCCCTGCC
GCCACTGCTATACACTTCGCCCGCCCAGCTAAAATTTGAGCGCGACTCAG
AGGGATGCACCTTCCTCGATGCCCAGCCCCTAGTTCCCGCAGTAGTGAAG
ACAGAGCCTCTGCCAGACGAACACCACCAGCTGGTGAATATTGAATACAA
GCCCACAGTGACGCAGCTGGAAAACGCGGCTAGCCACTACCTGGAGAGAG
CTACTGCCGAAAGTGTCATTCAGCGGTCGCCTCTCACGCCTGCCAACCAC
ATCCTGCCCGAGGCAGAGGATGCGCCATATGGAGGCCACACCAACGGTGG
CCAGACGGACGCCGAACGTTCGGCGAGCAAAAGGAGACGAGGGCGACGTA
GTATACTGCCGCACTCGGGCAAGATCACAATGGCAATAGTGGAGGCGCTG
CGCAAGGAGAACAGTTTGCTCGAGCAGCAGAACGACGCCTGTCTGCAGTC
GCTCGTGCGCAAGGAGAAGCAGTTCCTGGACATGAAACATAACTTTCTGG
CGTATATGGAGCGGCAGGAGGCAGTGCTGGCGTTAATAAAGCAAACGACC
ATCAAGCTGGAACCATGATCCCGACTACTAGCACCACGTGGTAAGGACAT
TGTATGACAGCTTTAGCTTTAAGTTGGGAATAGAGTCGCGGCGCTCGACC
CTGTGTATGTTTTTCAATTCGTTCCTTTCTCAGACACAGATGTCTAATTC
ACTCGACGTACAAAGCAGCAGCATAGCGAACCGAAGATATTATAATTTCT
CAAACGTTCTTTTTCTAGCGTCATAAGTGTAATGTGTATGAACAATCGTC
TGTGCAAAAGATCAATCTATACGGTCTTTAGTCTTAAATTAAAAACATTG
TCTTGAGGCGAACTTGTATGGTAGCTACATTTTTAAAAAAAAAACTAAAA
CTAAACAACTGGCTAAAAAATAAAAAAAAAAAAAAAAAA

LD40415.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-RA 1520 CG14005-RA 119..1492 1..1374 6870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5799583..5800674 1371..280 5275 99.3 Minus
chr2L 23010047 chr2L 5800737..5801016 280..1 1400 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5800514..5801608 1374..280 5475 100 Minus
2L 23513712 2L 5801671..5801950 280..1 1400 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5800514..5801608 1374..280 5475 100 Minus
2L 23513712 2L 5801671..5801950 280..1 1400 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:59:49 has no hits.

LD40415.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:00:59 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5799583..5800674 280..1371 99 <- Minus
chr2L 5800738..5801016 1..279 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:47 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 65..1018 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:06 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 65..1018 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:42:52 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 65..1018 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:26 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 65..1018 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:12 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 1..954 65..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:37 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 20..1390 1..1371 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:05 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 20..1390 1..1371 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:42:52 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 26..1396 1..1371 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:27 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 20..1390 1..1371 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:12 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
CG14005-RA 26..1396 1..1371 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:59 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5800517..5801608 280..1371 100 <- Minus
2L 5801672..5801950 1..279 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:59 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5800517..5801608 280..1371 100 <- Minus
2L 5801672..5801950 1..279 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:00:59 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5800517..5801608 280..1371 100 <- Minus
2L 5801672..5801950 1..279 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:42:52 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5800517..5801608 280..1371 100 <- Minus
arm_2L 5801672..5801950 1..279 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:58 Download gff for LD40415.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5800517..5801608 280..1371 100 <- Minus
2L 5801672..5801950 1..279 100   Minus

LD40415.hyp Sequence

Translation from 0 to 1017

> LD40415.hyp
LGHVRKCLDYNDSTKLKLDRNMSGQKHLRLRYYTSLEEAMLLRLWREHLH
AIPSYTDNLPIFREIAHGLQQNGVRLNKQEARRRINSYRNKYLNDRNRVG
GNANFAKDWRLYALIDCLFCPAWPSSALFHFRNVLETIRATARVDLPALP
PLLYTSPAQLKFERDSEGCTFLDAQPLVPAVVKTEPLPDEHHQLVNIEYK
PTVTQLENAASHYLERATAESVIQRSPLTPANHILPEAEDAPYGGHTNGG
QTDAERSASKRRRGRRSILPHSGKITMAIVEALRKENSLLEQQNDACLQS
LVRKEKQFLDMKHNFLAYMERQEAVLALIKQTTIKLEP*

LD40415.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-PA 317 CG14005-PA 1..317 22..338 1651 100 Plus
CG14005-PB 315 CG14005-PB 1..315 22..338 1627 99.4 Plus

LD40415.pep Sequence

Translation from 64 to 1017

> LD40415.pep
MSGQKHLRLRYYTSLEEAMLLRLWREHLHAIPSYTDNLPIFREIAHGLQQ
NGVRLNKQEARRRINSYRNKYLNDRNRVGGNANFAKDWRLYALIDCLFCP
AWPSSALFHFRNVLETIRATARVDLPALPPLLYTSPAQLKFERDSEGCTF
LDAQPLVPAVVKTEPLPDEHHQLVNIEYKPTVTQLENAASHYLERATAES
VIQRSPLTPANHILPEAEDAPYGGHTNGGQTDAERSASKRRRGRRSILPH
SGKITMAIVEALRKENSLLEQQNDACLQSLVRKEKQFLDMKHNFLAYMER
QEAVLALIKQTTIKLEP*

LD40415.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14301-PA 310 GF14301-PA 1..308 1..314 816 55.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24281-PA 320 GG24281-PA 1..316 1..317 1139 72.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10813-PA 317 GH10813-PA 13..317 3..313 506 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14005-PA 317 CG14005-PA 1..317 1..317 1651 100 Plus
CG14005-PB 315 CG14005-PB 1..315 1..317 1627 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17322-PA 315 GI17322-PA 14..315 3..314 578 41.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15399-PA 298 GL15399-PA 1..294 15..314 559 40.8 Plus
Dper\GL19115-PA 240 GL19115-PA 1..72 1..72 297 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12692-PA 312 GA12692-PA 1..308 1..314 630 43.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17996-PA 314 GM17996-PA 1..314 1..317 1453 86.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22630-PA 317 GD22630-PA 1..316 1..316 1490 88.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15908-PA 316 GJ15908-PA 14..316 3..314 579 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15416-PA 295 GK15416-PA 4..294 5..313 540 37.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18977-PA 320 GE18977-PA 1..316 1..317 1199 74.8 Plus