Clone LD40450 Report

Search the DGRC for LD40450

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:404
Well:50
Vector:pOT2
Associated Gene/TranscriptCG11309-RA
Protein status:LD40450.pep: gold
Preliminary Size:1712
Sequenced Size:1633

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11309 2001-01-01 Release 2 assignment
CG11309 2001-11-29 Blastp of sequenced clone
CG11309 2003-01-01 Sim4 clustering to Release 3
CG11309 2008-04-29 Release 5.5 accounting
CG11309 2008-08-15 Release 5.9 accounting
CG11309 2008-12-18 5.12 accounting

Clone Sequence Records

LD40450.complete Sequence

1633 bp (1633 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069637

> LD40450.complete
CGATGCTTTCACCTGTTTGTTGGGCGCATTGGTAATAAAATTATTCGAAT
GAAATCAATTCTGTATTAATTAGGAGGGAGCACAAGTATATTAAACAAAT
TGCAAAAAAATCTGTGACACAAAGACAACGTCGTTACTGATAAGGGCCGA
AATCGGCTAAACTTTGGAATTGGTGCTCATTCGCTTTTTGGCCACTTTCG
AGCGCAGAAATGGACACGGACGACAACTCAAGTGGCACTATTACCGGCAG
TGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGCGAAGCCC
CAACCAGACCCCGTGCAAACATATGGTGCTCTAAAAAATACTTCGCCGAG
ATCAGCATTACGGTTCCATGGGGGCACATATCCGGCAAGTGGTACGGTCC
GCAGAACGTCCAACCAATTTTAGGACTGCACGGGTGGCAGGATAATGCGG
GAACCTTTGATCGCCTGATGCCGCTGCTGTCGCCGGACGTGGCATTCCTC
GCGATCGATCTTCCTGGTCACGGGCTATCGTCCCGACTGCCTGATGGCTG
CTACTACAACTCCGTGGATAATCTGTATGTGATCCGCCTGATCATGAAGC
AGTACAAGTGGGAGAAAGTGTCCCTGGTTGGACACTCAATGTCGTCCATT
ATTTGCTTTGTTTTCGCCGCGGTCTTTCCGGACAAGGTGGACATGATCAT
TGGGATTGATGCCCTGAAACCTCATCAGCGTCCGTATCCGTCGGTTATTA
GGACCATGGAAACCCGTTTGGACGAGTTCTTGCGTGAAGACGAAAGGAAC
CGGAGTAAGAACGAGCCGCCGAGCTACACCTACGATGAACTTATTGAGAG
GGTCTATATCGGCACCTTCCATTCGGTGAACAAGGAGCACTGCAAGCATT
TAATGGCTCGCAACATCGGCAAGTCGGAGAAGTACCCGGACAAGTACTTC
TTCTGCCGCGATAGGCGTCTCAAGTTTTACAACTATGCCATCGGGTCCCA
GGAGCTGTGTGTGGAAATGGCCAATCGGATTACATGTCCTTACTTGTTCA
TCAAGGCCGCCCAGTCCTCGTATTTCGAGGACAAGAAGTACTACGACGAG
GTGCTGGATGTGCTGTTGAAGAAGCCGAACTTTGAGTACCTGGAGGTTAA
TGGCTCGCACCATGTGCACATGAACGATCCAGAGGCCATCATTGCACCGG
TCAACAACTTTATCCAGCGCTTCGGACCGGCGGCAGCGGCTGCATCCCGC
CAGAAGGCCAAGGAGGCGAAGGAGAGCAAGCTTTAGGCCAACGGTGTGGT
AAATAGAGCTTATTTATTGTAGTACAGATTGTACAGGTTTTTATACTTAA
TTGTTTATGCTATGTGATCGCGGCAGAGGACTCGGCTCTGCTATAAATAC
ACAATGTACATAAGCCGAGGGGTTTTTCGACTGCGCTTAATGGGGAAGTC
GTGAAGGATACCAAGAAACTGGTTATGTACAAGCTTAACCCTTTTGTATT
GCGCCCAAATTGTATATTTCAAAACTTTATAATTTATTTCAGCTCGAGCA
TCAATAATTTCGCTTTTTTGAATTGATATATAAAGAAGAGCTTACCATTT
TATTATCGTTTAAATAAAAAAAAAAAAAAAAAA

LD40450.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RA 1730 CG11309-RA 45..1660 1..1616 8080 100 Plus
CG11309.a 1632 CG11309.a 76..1562 130..1616 7435 100 Plus
CG11309-RB 1767 CG11309-RB 403..1678 341..1616 6380 100 Plus
CG11309-RB 1767 CG11309-RB 93..403 1..311 1555 100 Plus
CG11309.a 1632 CG11309.a 45..77 1..33 165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21291284..21292557 1615..342 6370 100 Minus
chr3L 24539361 chr3L 21292918..21293099 311..130 910 100 Minus
chr3L 24539361 chr3L 21293296..21293426 131..1 655 100 Minus
chr3L 24539361 chr3L 21294096..21294206 351..461 210 79.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302275..21303549 1616..342 6375 100 Minus
3L 28110227 3L 21303910..21304091 311..130 910 100 Minus
3L 28110227 3L 21304288..21304418 131..1 655 100 Minus
3L 28110227 3L 21305088..21305198 351..461 210 79.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21295375..21296649 1616..342 6375 100 Minus
3L 28103327 3L 21297010..21297191 311..130 910 100 Minus
3L 28103327 3L 21297388..21297518 131..1 655 100 Minus
3L 28103327 3L 21298188..21298298 351..461 210 79.2 Plus
3L 28103327 3L 21296908..21296937 341..312 150 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:32:15 has no hits.

LD40450.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:33:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21291284..21292557 342..1615 100 <- Minus
chr3L 21292816..21292845 312..341 100 <- Minus
chr3L 21292918..21293099 130..311 100 <- Minus
chr3L 21293298..21293426 1..129 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:48 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 210..1286 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:22:07 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 210..1286 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:07:27 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 210..1286 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:48:28 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 210..1286 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 1..1077 210..1286 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:56:39 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 45..1659 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:22:07 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 45..1659 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:07:27 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 50..1664 1..1615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:48:28 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 45..1659 1..1615 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RA 50..1664 1..1615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302276..21303549 342..1615 100 <- Minus
3L 21303808..21303837 312..341 100 <- Minus
3L 21303910..21304091 130..311 100 <- Minus
3L 21304290..21304418 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302276..21303549 342..1615 100 <- Minus
3L 21303808..21303837 312..341 100 <- Minus
3L 21303910..21304091 130..311 100 <- Minus
3L 21304290..21304418 1..129 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:33:12 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302276..21303549 342..1615 100 <- Minus
3L 21303808..21303837 312..341 100 <- Minus
3L 21303910..21304091 130..311 100 <- Minus
3L 21304290..21304418 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:07:27 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295376..21296649 342..1615 100 <- Minus
arm_3L 21296908..21296937 312..341 100 <- Minus
arm_3L 21297010..21297191 130..311 100 <- Minus
arm_3L 21297390..21297518 1..129 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:59 Download gff for LD40450.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21295376..21296649 342..1615 100 <- Minus
3L 21296908..21296937 312..341 100 <- Minus
3L 21297010..21297191 130..311 100 <- Minus
3L 21297390..21297518 1..129 100   Minus

LD40450.hyp Sequence

Translation from 209 to 1285

> LD40450.hyp
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKL*

LD40450.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 358 CG11309-PA 1..358 1..358 1924 100 Plus
CG11309-PF 348 CG11309-PF 1..348 1..358 1843 97.2 Plus
CG11309-PE 348 CG11309-PE 1..348 1..358 1843 97.2 Plus
CG11309-PD 348 CG11309-PD 1..348 1..358 1843 97.2 Plus
CG11309-PC 348 CG11309-PC 1..348 1..358 1843 97.2 Plus

LD40450.pep Sequence

Translation from 209 to 1285

> LD40450.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPRANIWCSKKYFAEISI
TVPWGHISGKWYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAID
LPGHGLSSRLPDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICF
VFAAVFPDKVDMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSK
NEPPSYTYDELIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCR
DRRLKFYNYAIGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLD
VLLKKPNFEYLEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKA
KEAKESKL*

LD40450.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24201-PA 348 GF24201-PA 1..348 1..358 1757 91.3 Plus
Dana\GF10275-PA 330 GF10275-PA 32..329 43..340 867 52.7 Plus
Dana\GF24930-PA 362 GF24930-PA 21..332 47..356 717 43.6 Plus
Dana\GF24931-PA 315 GF24931-PA 1..312 40..351 622 42.5 Plus
Dana\GF24932-PA 342 GF24932-PA 4..321 40..356 608 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13244-PA 349 GG13244-PA 1..349 1..358 1819 93.9 Plus
Dere\GG16172-PA 330 GG16172-PA 19..329 27..340 886 51.6 Plus
Dere\GG14529-PA 357 GG14529-PA 21..340 47..358 666 42.2 Plus
Dere\GG14531-PA 335 GG14531-PA 9..320 45..357 640 41.1 Plus
Dere\GG14532-PA 344 GG14532-PA 9..322 45..356 620 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16159-PA 359 GH16159-PA 8..359 2..358 1576 83.7 Plus
Dgri\GH16485-PA 353 GH16485-PA 22..332 47..355 696 42.8 Plus
Dgri\GH16488-PA 343 GH16488-PA 9..322 45..357 628 39.8 Plus
Dgri\GH23210-PA 318 GH23210-PA 9..317 45..352 563 38.9 Plus
Dgri\GH16489-PA 318 GH16489-PA 9..317 45..352 563 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PA 358 CG11309-PA 1..358 1..358 1924 100 Plus
CG11309-PF 348 CG11309-PF 1..348 1..358 1843 97.2 Plus
CG11309-PE 348 CG11309-PE 1..348 1..358 1843 97.2 Plus
CG11309-PD 348 CG11309-PD 1..348 1..358 1843 97.2 Plus
CG11309-PC 348 CG11309-PC 1..348 1..358 1843 97.2 Plus
CG11309-PB 348 CG11309-PB 1..348 1..358 1843 97.2 Plus
CG7632-PA 330 CG7632-PA 19..329 27..340 864 50.6 Plus
CG7632-PB 312 CG7632-PB 16..311 45..340 854 52.4 Plus
CG5707-PC 361 CG5707-PC 13..320 35..340 731 44.5 Plus
CG5707-PB 361 CG5707-PB 13..320 35..340 731 44.5 Plus
CG5707-PA 357 CG5707-PA 21..316 47..340 726 45.3 Plus
CG5704-PB 335 CG5704-PB 9..320 45..357 663 43.1 Plus
CG5704-PA 335 CG5704-PA 9..320 45..357 663 43.1 Plus
CG15879-PA 342 CG15879-PA 6..316 45..352 619 41.2 Plus
CG15820-PA 308 CG15820-PA 7..302 45..340 595 41.9 Plus
kraken-PB 331 CG3943-PB 41..329 47..336 495 37.3 Plus
kraken-PA 331 CG3943-PA 41..329 47..336 495 37.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13311-PA 352 GI13311-PA 7..352 5..358 1541 83.1 Plus
Dmoj\GI12011-PA 336 GI12011-PA 38..335 43..340 895 53.7 Plus
Dmoj\GI12158-PA 395 GI12158-PA 60..355 47..340 709 45.3 Plus
Dmoj\GI12160-PA 342 GI12160-PA 9..305 45..340 656 43 Plus
Dmoj\GI12161-PA 343 GI12161-PA 9..331 45..356 599 39.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24589-PA 348 GL24589-PA 1..348 1..358 1715 89.9 Plus
Dper\GL24680-PA 330 GL24680-PA 32..329 43..340 856 52.3 Plus
Dper\GL24627-PA 331 GL24627-PA 9..325 45..358 659 41.6 Plus
Dper\GL24626-PA 348 GL24626-PA 9..329 45..357 643 42.5 Plus
Dper\GL19501-PA 186 GL19501-PA 1..184 151..336 225 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10906-PA 348 GA10906-PA 1..348 1..358 1715 89.9 Plus
Dpse\GA20494-PA 330 GA20494-PA 17..329 21..340 855 50.6 Plus
Dpse\GA19073-PA 365 GA19073-PA 28..323 47..340 714 46 Plus
Dpse\GA23367-PA 348 GA23367-PA 9..329 45..357 659 43.4 Plus
Dpse\GA23368-PA 332 GA23368-PA 9..305 45..340 648 43.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26924-PA 355 GM22149-PA 1..355 1..358 1812 95.3 Plus
Dsec\GM22356-PA 329 GM22356-PA 21..328 30..340 868 51.1 Plus
Dsec\GM14139-PA 345 GM14139-PA 9..319 45..352 619 41 Plus
Dsec\GM14136-PA 308 GM14136-PA 7..306 45..344 596 41.3 Plus
Dsec\GM14138-PA 293 GM14138-PA 9..270 45..308 594 44.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12125-PA 360 GD12125-PA 1..360 1..358 1897 97.8 Plus
Dsim\GD14950-PA 330 GD14950-PA 19..329 27..340 867 50.3 Plus
Dsim\GD13405-PA 357 GD13405-PA 21..316 47..340 669 44 Plus
Dsim\GD13408-PA 335 GD13408-PA 9..320 45..357 668 43 Plus
Dsim\GD13410-PA 345 GD13410-PA 9..319 45..352 627 41.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12081-PA 357 GJ12081-PA 24..357 15..358 1586 88.1 Plus
Dvir\GJ13282-PA 336 GJ13282-PA 38..335 43..340 889 54 Plus
Dvir\GJ13437-PA 357 GJ13437-PA 22..317 47..340 701 44.6 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 9..321 45..356 644 40.5 Plus
Dvir\GJ13440-PA 343 GJ13440-PA 9..321 45..356 640 41.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20424-PA 352 GK20424-PA 18..333 15..340 1581 89.3 Plus
Dwil\GK20467-PA 335 GK20467-PA 37..334 43..340 845 51.3 Plus
Dwil\GK12598-PA 358 GK12598-PA 20..315 47..340 681 45.6 Plus
Dwil\GK12602-PA 346 GK12602-PA 9..311 45..345 669 43.9 Plus
Dwil\GK24439-PA 338 GK24439-PA 42..335 45..335 543 39.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22964-PA 348 GE22964-PA 1..348 1..358 1846 95.5 Plus
Dyak\GE19742-PA 330 GE19742-PA 19..329 27..340 885 51.9 Plus
Dyak\GE23049-PA 330 GE23049-PA 19..329 27..340 885 51.9 Plus
Dyak\GE20878-PA 357 GE20878-PA 21..316 47..340 669 44 Plus
Dyak\GE20883-PA 335 GE20883-PA 9..320 45..357 635 42.1 Plus