Clone LD40453 Report

Search the DGRC for LD40453

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:404
Well:53
Vector:pOT2
Associated Gene/TranscriptCG2982-RB
Protein status:LD40453.pep: gold
Preliminary Size:2317
Sequenced Size:2233

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2982 2001-01-01 Release 2 assignment
CG2982 2001-07-04 Blastp of sequenced clone
CG2982 2003-01-01 Sim4 clustering to Release 3
CG2982 2008-04-29 Release 5.5 accounting
CG2982 2008-08-15 Release 5.9 accounting
CG2982 2008-12-18 5.12 accounting

Clone Sequence Records

LD40453.complete Sequence

2233 bp (2233 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051917

> LD40453.complete
TTTGAATACAGCCAGGCGTGAGTGTTTAAGACTTTAAGGATTAAGACCTA
GTGTCGTTTAAAAAAGCTGCAAAATGAAAAAGGCGACTACTTCCGCGGCC
GCCAAGTCTCAAGGCAACAGCAAAATGCAGAAAAACGCAAATAACGGCAC
AGCTAAAGACAAGAAGAAGCCCAATCTAGATAAAGAATCGAATGATTCCA
ATTCGGTATCTGATATGCTCGCCGTAACCAAGGACCAAGAGGTGCATGCC
TTTTTCTCTAAATTATTCGACGATGACGCCGGTCCATCAACATCCAAAAA
GACCCAGTCAGGGTCAGCCGCAGCCGCTAAGACCGCAGATCGCAAGCGAC
GTCTTCAGGCCGAGGCGGATGCCAACAATAATGATACCGGAAAAGCCGGT
AAGTTGACCAAGGAATCGGAAGCTACTCAAGGAGCCAGGGCCACCAAACG
CAAGCAAGCACGTAGTCTGGGACTGGAGCGCACCTCGCCGATCCAGGTTA
ATGGCGCGGCTTTAGCCTGCCCTTTGGTGCGCAAATCGCTGCCCCCAGGG
GAGGCCAATTCCTGTCCTCAGCCGCCCAAAAAGGACCCAGCAGCCGTGAA
CTCATTAGTTAAAATAATTAAGGCGGAACCCACCGAAGAGGGCAATAATA
ACAATGACGAAAAGGAGACTGAAACAATAGAAACTCACAAAGCCGACAGC
GTCGAAGAGGGTCGTCGCGTCCTGCAGTGGATACTCTTTCCGGTCCAAAC
TAAAGTCTTCTTCAAAGACTTCTGGGAGCACACCGCCTGCCTGGTGCAGC
GCTCTAATCCCAAATACTTTCAAAGTATGATATCATTCAAGATGCTTGAC
GAAATACTGATTCGCCATCATTTGGACTTCACCGTCAACGTGGATGTGAC
CACTTACAAGAACGGCAAGCGTGAGACACTGAATCCCGAGGGTCGTGCCT
TGCCACCAGCTGTGTGGGGCTTCTATTCGGACGGCTGCAGCATTCGTTTA
CTGAATCCTTCCACCTATCTAATTCGCTTGCGTCAGGTGTGCACCGTTTT
GCAGGAGTTCTTTCACTGCAAGGTGGGGGCAAATCTATACCTAACCCCAC
CCAATAGCCAGGGCTTTGCGCCCCATTACGATGACATCGAGGCTTTCGTT
ATCCAAGTGGAGGGACGCAAGCGCTGGCTTTTGTACGAGCCGCCCAAGAA
GGCCGATCAACTGGCCAGGATCTCGTCGGGCAACTATGATCAAGAGCAGC
TGGGTAAGCCCATAATTGATGAGGTACTAAGCGCCGGCGATGTACTATAT
TTCCCGAGAGGCGCTGTTCACCAGGCCATCACCGAAGAGCAACAGCACTC
GCTGCACATTACCTTGAGTGTTTACCAACAGCAGGCATATGCCAATCTTC
TAGAGACACTAATGCCCATGGTTCTTAAGAAGGCCGTCGATCGGAGTGTG
GCCTTGCGTCGCGGCTTGCCGCTGCACACTTTTCAAGTTTTGGGCAATGC
CTACAAGGGAAATGACTGCGGGTCGCGCAAACAGCTGGTGGAGAATGTGC
AGAAGCTGGTGACCAATTACTTGATGCCCTCCGAAGATGATATTGATGAG
GCCGTCGACCAGATGGCCAAGAAGTTCCAGCACGAGGCACTTCCGCCGAT
CGTATTGCCCTCGGAGGAGGTGCGCACTGTTCATGGGGCACGCAGTGATG
CCGATGAGCAGGGCAACTGCGTCTGCGATTACAAATTCAATAAAAAGACA
TCCGTGCGCCTGCTGCGTGCCAACATTCTGCGTCTGGTGACCGAGTCCGA
TGGCAGCGTGCGTATCTACCACCATGTGGACAATGGCCTGGATTACTGCA
AGTACGAGCCCTATTTCATGGAGATTCTGCCAGAGGAAGCTAAAGCCGTT
GAGCTCCTCATATCGGCCTATCCATTTTACCTCACCATTGATCAGTTGCC
ATTGGAGTCTTCAGCTCGCAAGATAGAGGTCGCCACCGCCCTGTGGGAGC
ATGGTCTTCTTATGACCGAGAAGCCGTTTAAGTAGACGGCAATCGAAAGC
GAGTTGCTGTTGATAATTAGAATTAAGTATCGATGCGAATGTGTATCTAA
AACGAGCGTAAATTAATATTTTTGTATAAATATGTAACCAGATTTATAAT
GCTCCTATTCTGCCGAAAATAAAGCACCCACATTCGCACATAAAAAAAAA
AAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAA

LD40453.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2982-RB 2279 CG2982-RB 89..2279 1..2191 10955 100 Plus
CG2982.a 2245 CG2982.a 67..2245 13..2191 10895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4212637..4214822 7..2192 10900 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4319561..4321746 7..2192 10930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4327659..4329844 7..2192 10930 100 Plus
Blast to na_te.dros performed 2019-03-16 20:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 1912..1974 2173..2111 116 68.8 Minus

LD40453.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:40 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4212631..4214821 1..2191 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:49 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RA 1..1962 74..2035 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:18 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 1..1962 74..2035 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:50 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 1..1962 74..2035 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:35 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RA 1..1962 74..2035 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:44 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 1..1962 74..2035 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:14:21 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 54..2244 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:18 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 54..2244 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:50 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 56..2246 1..2191 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:35 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 54..2244 1..2191 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:44 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
CG2982-RB 56..2246 1..2191 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:40 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
X 4319555..4321745 1..2191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:40 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
X 4319555..4321745 1..2191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:40 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
X 4319555..4321745 1..2191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:50 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4213588..4215778 1..2191 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:56 Download gff for LD40453.complete
Subject Subject Range Query Range Percent Splice Strand
X 4327653..4329843 1..2191 99   Plus

LD40453.hyp Sequence

Translation from 73 to 2034

> LD40453.hyp
MKKATTSAAAKSQGNSKMQKNANNGTAKDKKKPNLDKESNDSNSVSDMLA
VTKDQEVHAFFSKLFDDDAGPSTSKKTQSGSAAAAKTADRKRRLQAEADA
NNNDTGKAGKLTKESEATQGARATKRKQARSLGLERTSPIQVNGAALACP
LVRKSLPPGEANSCPQPPKKDPAAVNSLVKIIKAEPTEEGNNNNDEKETE
TIETHKADSVEEGRRVLQWILFPVQTKVFFKDFWEHTACLVQRSNPKYFQ
SMISFKMLDEILIRHHLDFTVNVDVTTYKNGKRETLNPEGRALPPAVWGF
YSDGCSIRLLNPSTYLIRLRQVCTVLQEFFHCKVGANLYLTPPNSQGFAP
HYDDIEAFVIQVEGRKRWLLYEPPKKADQLARISSGNYDQEQLGKPIIDE
VLSAGDVLYFPRGAVHQAITEEQQHSLHITLSVYQQQAYANLLETLMPMV
LKKAVDRSVALRRGLPLHTFQVLGNAYKGNDCGSRKQLVENVQKLVTNYL
MPSEDDIDEAVDQMAKKFQHEALPPIVLPSEEVRTVHGARSDADEQGNCV
CDYKFNKKTSVRLLRANILRLVTESDGSVRIYHHVDNGLDYCKYEPYFME
ILPEEAKAVELLISAYPFYLTIDQLPLESSARKIEVATALWEHGLLMTEK
PFK*

LD40453.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2982-PC 653 CG2982-PC 1..653 1..653 3390 100 Plus
CG2982-PB 653 CG2982-PB 1..653 1..653 3390 100 Plus

LD40453.pep Sequence

Translation from 73 to 2034

> LD40453.pep
MKKATTSAAAKSQGNSKMQKNANNGTAKDKKKPNLDKESNDSNSVSDMLA
VTKDQEVHAFFSKLFDDDAGPSTSKKTQSGSAAAAKTADRKRRLQAEADA
NNNDTGKAGKLTKESEATQGARATKRKQARSLGLERTSPIQVNGAALACP
LVRKSLPPGEANSCPQPPKKDPAAVNSLVKIIKAEPTEEGNNNNDEKETE
TIETHKADSVEEGRRVLQWILFPVQTKVFFKDFWEHTACLVQRSNPKYFQ
SMISFKMLDEILIRHHLDFTVNVDVTTYKNGKRETLNPEGRALPPAVWGF
YSDGCSIRLLNPSTYLIRLRQVCTVLQEFFHCKVGANLYLTPPNSQGFAP
HYDDIEAFVIQVEGRKRWLLYEPPKKADQLARISSGNYDQEQLGKPIIDE
VLSAGDVLYFPRGAVHQAITEEQQHSLHITLSVYQQQAYANLLETLMPMV
LKKAVDRSVALRRGLPLHTFQVLGNAYKGNDCGSRKQLVENVQKLVTNYL
MPSEDDIDEAVDQMAKKFQHEALPPIVLPSEEVRTVHGARSDADEQGNCV
CDYKFNKKTSVRLLRANILRLVTESDGSVRIYHHVDNGLDYCKYEPYFME
ILPEEAKAVELLISAYPFYLTIDQLPLESSARKIEVATALWEHGLLMTEK
PFK*

LD40453.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20792-PA 843 GF20792-PA 366..843 173..653 1798 66.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18702-PA 657 GG18702-PA 1..657 1..653 2333 65.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24285-PA 723 GH24285-PA 150..721 77..653 1529 50.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
NO66-PC 653 CG2982-PC 1..653 1..653 3390 100 Plus
NO66-PB 653 CG2982-PB 1..653 1..653 3390 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16410-PA 888 GI16410-PA 464..888 205..653 1516 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12933-PA 687 GL12933-PA 102..685 74..653 1411 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27866-PA 946 GA27866-PA 498..944 203..653 1398 55.1 Plus
Dpse\GA27865-PA 494 GA27865-PA 46..492 203..653 1355 55.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12339-PA 655 GM12339-PA 1..655 1..653 2980 84.5 Plus
Dsec\GM16221-PA 193 GM16221-PA 6..193 52..249 674 70 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16684-PA 847 GD16684-PA 258..847 62..653 2855 87.9 Plus
Dsim\GD16684-PA 847 GD16684-PA 1..107 1..118 318 63 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17031-PA 907 GJ17031-PA 390..907 148..653 1730 59.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15670-PA 767 GK15670-PA 112..767 36..653 1734 50.5 Plus
Dwil\GK10507-PA 158 GK10507-PA 1..158 495..653 531 61 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16340-PA 683 GE16340-PA 1..683 1..653 2430 68.4 Plus