Clone LD40460 Report

Search the DGRC for LD40460

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:404
Well:60
Vector:pOT2
Associated Gene/TranscriptSam-S-RA
Protein status:LD40460.pep: gold
Preliminary Size:2341
Sequenced Size:2085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2674 2001-01-01 Release 2 assignment
CG2674 2001-07-04 Blastp of sequenced clone
CG2674 2003-01-01 Sim4 clustering to Release 3
M(2)21AB 2008-04-29 Release 5.5 accounting
M(2)21AB 2008-08-15 Release 5.9 accounting
M(2)21AB 2008-12-18 5.12 accounting

Clone Sequence Records

LD40460.complete Sequence

2085 bp (2085 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051918

> LD40460.complete
TCGCTAAGATAGGACGTGTGTTGGCTGCGCCGCTGATTTGGTTGCCGTCG
CTGAACCAGTATAACTCAGAATCACTCCACCAACAATTTAGCCGACCGGA
ACTCGGGTTATAGCACTGCTCCCCCATTGCCCCTTCAAACTTCGAGTTAC
ATATTACAAACTACCCATCAACATGCCGCAAAAGACAAACGGACATAGCG
CCAACGGATGCAACGGCAGCAATGGCAACTCATATGACATGGAAGACGGA
GCTACATTCCTGTTCACTTCCGAGTCCGTTGGCGAGGGTCATCCAGACAA
AATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAGCAGG
ATCCAAACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCATGATT
CTGCTGTGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAGAAGGT
TGTTCGTGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAAGGGTT
TCGATTTCAAAACGTGCAATGTGCTGTTGGCATTGGACCAACAATCGCCT
GAGATCGCTGCGGGAGTGCATGTCAACCGTGCCGAGGAAGAGATCGGTGC
CGGAGATCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGAGGAAT
GTATGCCCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGATTGCT
GAGCTGCGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCCAAAAC
ACAAGTAACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCCCAAGC
GTGTCCACACTATTGTAGTGTCCATGCAGCATTCTGAAAAGATATCGTTA
GAAACCCTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGTCATTCC
CGCCAAATACATTGATGCCAACACCATTGTCCACATCAATCCTTGTGGGC
TTTTTGTAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGAAGAAAA
ATCATTGTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGTGCATT
CTCTGGCAAGGACTTCACCAAGGTTGACAGATCAGCTGCATATGCAGCAC
GCTGGGTGGCCAAATCACTGGTTAAGGCCGGTCTCTGCAAGCGCTGCCTT
GTCCAAGTGTCCTACGCCATAGGTCTTGCTGAGCCTCTCTCCATAACTGT
GTTCGACTACGGAACTTCTCACAAGTCACAAAAAGAACTTCTGGATATCA
TCCGTCGAAACTTTGACCTCAGGCCCGGCAAGATTGTCAAGGACCTAAAC
CTGCGCCAGCCGATATACCAGCGAACAAGCACTTATGGACACTTCGGTCG
CGCGGGCTTCTCGTGGGAGGAGGCCAAGCCTCTGGAGATTGACAACTGAC
TAGACGCTGAAGCGTTGCAACCGCAGTCACCATATGCTAAAAGGTCGAAG
CTATCCTTATATTCATCAGCGTCAAAATTAACAGATACCCAAGCACCAAC
GTAATTTTTAGTGTCGTTTTTAAAGCCTAAAGTCAGAGGAGAAGGCGGCA
TAGGCTTGCCAACTCTTATGGGCTTTCTTCTCTAACTTATGCTGTGCTCT
TCGCTATATAATTTAAACCATTCTGATGTGTGTAGTCTTCTCACACGGAA
CTAGTTTTAGTCGTCTTAATACCCGCATATATACCTAATAGAGAGCTCCA
AAAGAATTGATGAGCTTTAGTTATGCATATACATAGTATAGTGTCGGTCA
GTTCAGTAAAAATTAAAGCAGTAGTTAGTACCTCCTTCAATTATCATGCA
ACTTAATTATGTTGGTGTCTATGGAAATTGTATAAAACAATTAAATCCGT
TGCCTAGAAATTATGCAACATTCTCATGTCCCCATTGTAAACTTATTTTT
GTCTCTTTTAACATTTCTATTTGTTGTATGCGTTGTATATGTTAAACCTA
AAGTTTTAAACAACTCGATTGTATGTACATTACACTCTGTCTTTGTATTT
TCTGTAACCAACCATAAGATAATGTATTTTCCTTTACAAAAATATATTAA
AGATAAATATGAAAAGTAAAAAAAAAAAAAAAAAA

LD40460.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
M(2)21AB-RF 2682 M(2)21AB-RF 393..2460 1..2068 10340 100 Plus
M(2)21AB-RH 2681 M(2)21AB-RH 393..2460 1..2068 10340 100 Plus
M(2)21AB-RI 2802 M(2)21AB-RI 587..2580 75..2068 9970 100 Plus
M(2)21AB-RI 2802 M(2)21AB-RI 393..466 1..74 370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 113471..114247 1291..2067 3870 99.9 Plus
chr2L 23010047 chr2L 112724..113407 608..1291 3420 100 Plus
chr2L 23010047 chr2L 108625..108846 75..296 1110 100 Plus
chr2L 23010047 chr2L 110791..110916 374..499 630 100 Plus
chr2L 23010047 chr2L 111943..112057 497..611 575 100 Plus
chr2L 23010047 chr2L 110441..110520 295..374 400 100 Plus
chr2L 23010047 chr2L 108190..108263 1..74 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 113434..114211 1291..2068 3890 100 Plus
2L 23513712 2L 112687..113370 608..1291 3420 100 Plus
2L 23513712 2L 108588..108809 75..296 1110 100 Plus
2L 23513712 2L 110754..110879 374..499 630 100 Plus
2L 23513712 2L 111906..112020 497..611 575 100 Plus
2L 23513712 2L 110404..110483 295..374 400 100 Plus
2L 23513712 2L 108153..108226 1..74 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 113434..114211 1291..2068 3890 100 Plus
2L 23513712 2L 112687..113370 608..1291 3420 100 Plus
2L 23513712 2L 108588..108809 75..296 1110 100 Plus
2L 23513712 2L 110754..110879 374..499 630 100 Plus
2L 23513712 2L 111906..112020 497..611 575 100 Plus
2L 23513712 2L 110404..110483 295..374 400 100 Plus
2L 23513712 2L 108153..108226 1..74 370 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:25:21 has no hits.

LD40460.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:26:25 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 108190..108263 1..74 100 -> Plus
chr2L 108625..108846 75..296 100 -> Plus
chr2L 110443..110520 297..374 100 -> Plus
chr2L 110792..110914 375..497 100 -> Plus
chr2L 111944..112056 498..610 100 -> Plus
chr2L 112727..113406 611..1290 100 -> Plus
chr2L 113471..114247 1291..2067 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:50 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 1..1227 173..1399 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:16:58 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RF 1..1227 173..1399 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:10 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 1..1227 173..1399 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:48:28 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 1..1227 173..1399 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:38:57 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RI 1..1227 173..1399 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:11:28 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 65..2131 1..2067 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:16:58 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RF 65..2131 1..2067 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:10 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RH 217..2283 1..2067 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:48:29 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
M(2)21AB-RF 65..2131 1..2067 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:38:57 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
Sam-S-RH 217..2283 1..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:25 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108588..108809 75..296 100 -> Plus
2L 110406..110483 297..374 100 -> Plus
2L 110755..110877 375..497 100 -> Plus
2L 111907..112019 498..610 100 -> Plus
2L 108153..108226 1..74 100 -> Plus
2L 112690..113369 611..1290 100 -> Plus
2L 113434..114210 1291..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:25 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108588..108809 75..296 100 -> Plus
2L 110406..110483 297..374 100 -> Plus
2L 110755..110877 375..497 100 -> Plus
2L 111907..112019 498..610 100 -> Plus
2L 108153..108226 1..74 100 -> Plus
2L 112690..113369 611..1290 100 -> Plus
2L 113434..114210 1291..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:25 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108588..108809 75..296 100 -> Plus
2L 110406..110483 297..374 100 -> Plus
2L 110755..110877 375..497 100 -> Plus
2L 111907..112019 498..610 100 -> Plus
2L 108153..108226 1..74 100 -> Plus
2L 112690..113369 611..1290 100 -> Plus
2L 113434..114210 1291..2067 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:10 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 108153..108226 1..74 100 -> Plus
arm_2L 108588..108809 75..296 100 -> Plus
arm_2L 110406..110483 297..374 100 -> Plus
arm_2L 110755..110877 375..497 100 -> Plus
arm_2L 111907..112019 498..610 100 -> Plus
arm_2L 112690..113369 611..1290 100 -> Plus
arm_2L 113434..114210 1291..2067 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:26:32 Download gff for LD40460.complete
Subject Subject Range Query Range Percent Splice Strand
2L 108153..108226 1..74 100 -> Plus
2L 108588..108809 75..296 100 -> Plus
2L 110406..110483 297..374 100 -> Plus
2L 110755..110877 375..497 100 -> Plus
2L 111907..112019 498..610 100 -> Plus
2L 112690..113369 611..1290 100 -> Plus
2L 113434..114210 1291..2067 100   Plus

LD40460.pep Sequence

Translation from 172 to 1398

> LD40460.pep
MPQKTNGHSANGCNGSNGNSYDMEDGATFLFTSESVGEGHPDKMCDQISD
AILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQH
IGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMF
GYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYL
FNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDAN
TIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTK
VDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH
KSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEE
AKPLEIDN*

LD40460.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14863-PA 445 GF14863-PA 1..445 1..407 2090 89.9 Plus
Dana\GF16137-PA 147 GF16137-PA 1..147 226..407 669 76.4 Plus
Dana\GF16127-PA 383 GF16127-PA 280..383 68..172 517 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24695-PA 408 GG24695-PA 1..408 1..408 2006 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10060-PA 448 GH10060-PA 1..448 1..407 1922 85.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-PE 408 CG2674-PE 1..408 1..408 2144 100 Plus
Sam-S-PA 408 CG2674-PA 1..408 1..408 2144 100 Plus
Sam-S-PI 408 CG2674-PI 1..408 1..408 2144 100 Plus
Sam-S-PF 408 CG2674-PF 1..408 1..408 2144 100 Plus
Sam-S-PH 408 CG2674-PH 1..408 1..408 2144 100 Plus
Sam-S-PD 408 CG2674-PD 1..408 1..408 2144 100 Plus
Sam-S-PJ 408 CG2674-PJ 1..408 1..408 2096 97.1 Plus
Sam-S-PC 408 CG2674-PC 1..408 1..408 2096 97.1 Plus
Sam-S-PG 381 CG2674-PG 15..381 42..408 1868 96.7 Plus
Sam-S-PB 200 CG2674-PB 1..146 1..146 721 91.8 Plus
Sam-S-PL 138 CG2674-PL 1..116 1..116 586 94.8 Plus
Sam-S-PK 115 CG2674-PK 1..109 1..109 579 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16450-PA 421 GI16450-PA 1..421 1..407 1757 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16618-PA 407 GL16618-PA 1..407 1..407 2147 97.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15421-PA 407 GA15421-PA 1..407 1..407 1972 94.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16715-PA 408 GM16715-PA 1..408 1..408 2016 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23001-PA 381 GD23001-PA 15..381 42..408 1786 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16217-PA 412 GJ16217-PA 1..412 1..407 1920 93.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24606-PA 447 GK24606-PA 1..447 1..407 2061 89 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16582-PA 464 GE16582-PA 1..464 1..408 2093 86.4 Plus

LD40460.hyp Sequence

Translation from 172 to 1398

> LD40460.hyp
MPQKTNGHSANGCNGSNGNSYDMEDGATFLFTSESVGEGHPDKMCDQISD
AILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQH
IGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVHVNRAEEEIGAGDQGIMF
GYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYL
FNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDAN
TIVHINPCGLFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTK
VDRSAAYAARWVAKSLVKAGLCKRCLVQVSYAIGLAEPLSITVFDYGTSH
KSQKELLDIIRRNFDLRPGKIVKDLNLRQPIYQRTSTYGHFGRAGFSWEE
AKPLEIDN*

LD40460.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sam-S-PE 408 CG2674-PE 1..408 1..408 2144 100 Plus
Sam-S-PA 408 CG2674-PA 1..408 1..408 2144 100 Plus
Sam-S-PI 408 CG2674-PI 1..408 1..408 2144 100 Plus
Sam-S-PF 408 CG2674-PF 1..408 1..408 2144 100 Plus
Sam-S-PH 408 CG2674-PH 1..408 1..408 2144 100 Plus