Clone LD40483 Report

Search the DGRC for LD40483

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:404
Well:83
Vector:pOT2
Associated Gene/TranscriptRfC4-RA
Protein status:LD40483.pep: gold
Preliminary Size:1238
Sequenced Size:1130

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14999 2001-01-01 Release 2 assignment
CG14999 2002-03-19 Blastp of sequenced clone
CG14999 2003-01-01 Sim4 clustering to Release 3
RfC40 2008-04-29 Release 5.5 accounting
RfC40 2008-08-15 Release 5.9 accounting
RfC40 2008-12-18 5.12 accounting

Clone Sequence Records

LD40483.complete Sequence

1130 bp (1130 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094829

> LD40483.complete
AATTTGTTTGTGCGAATTTGTGAAATTGCACATAAAATGCCGGAAGAACC
AGAGAAAACGGCGGACGACAAGCGCAGTCACTTGCCGTGGATTGAGAAGT
ACCGCCCCGTGAAGTTCAAGGAGATAGTGGGCAATGAGGATACCGTAGCA
AGACTATCCGTATTCGCCACCCAGGGAAATGCACCCAATATTATTATTGC
TGGTCCTCCTGGCGTGGGCAAGACAACCACCATCCAGTGTCTGGCCAGGA
TTCTCCTGGGAGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCC
AATGAACGAGGAATCGATGTGGTCCGCAACAAGATCAAGATGTTTGCTCA
GCAGAAGGTGACACTGCCGCGGGGCAGGCACAAGATTGTGATTCTGGACG
AGGCGGACAGCATGACGGAGGGTGCCCAGCAGGCACTGCGCCGGACCATG
GAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGCGA
GAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATTCACCA
AGCTGTCCGATGCGCAAGTTCTGGCCAAGCTCATCGAGGTGGCCAAGTGG
GAGAAGCTTAACTACACGGAGGACGGACTTGAGGCCATCGTATTCACTGC
CCAAGGTGATATGCGACAGGGACTGAACAACCTGCAGTCCACCGCTCAGG
GATTTGGCGACATCACCGCTGAGAACGTCTTTAAGGTCTGCGACGAGCCG
CACCCAAAGCTCCTAGAGGAGATGATCCACCATTGCGCTGCTAACGACAT
ACACAAGGCCTACAAAATCCTGGCCAAGCTGTGGAAGCTGGGATACTCGC
CGGAGGACATCATTGCGAACATATTCCGTGTCTGCAAGCGCATCAACATC
GATGAGCATTTGAAGCTGGACTTTATCCGTGAGATCGGAATCACCCACAT
GAAGATTATCGATGGTATCAACTCGCTGCTGCAGCTCACCGCCCTTCTGG
CCAAACTCTGCATTGCCGCCGAGAAGCATTAGATTTAATATGAACTATAG
GTTAAAGAAATCTCAGAGATAAATAAAATTGGAGATAAATAAGTCCTTTT
CAGTATTGAAAAAAAAAAAAAAAAAAAAAA

LD40483.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-RA 1192 RfC4-RA 78..1187 1..1110 5550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4134246..4135152 1108..202 4535 100 Minus
chr3L 24539361 chr3L 4135204..4135405 202..1 1010 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:35:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4134858..4135766 1110..202 4545 100 Minus
3L 28110227 3L 4135818..4136019 202..1 1010 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4134858..4135766 1110..202 4545 100 Minus
3L 28103327 3L 4135818..4136019 202..1 1010 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:25:31 has no hits.

LD40483.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:26:31 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4134246..4135152 202..1108 100 <- Minus
chr3L 4135205..4135405 1..201 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:22:51 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 1..996 37..1032 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:27:52 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 1..996 37..1032 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:19 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 1..996 37..1032 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:02:32 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 1..996 37..1032 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:39:11 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 1..996 37..1032 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:54:24 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 21..1128 1..1108 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:27:52 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 21..1128 1..1108 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:19 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 20..1127 1..1108 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:02:32 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC40-RA 21..1128 1..1108 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:39:11 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
RfC4-RA 20..1127 1..1108 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:31 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4134860..4135766 202..1108 100 <- Minus
3L 4135819..4136019 1..201 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:31 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4134860..4135766 202..1108 100 <- Minus
3L 4135819..4136019 1..201 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:26:31 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4134860..4135766 202..1108 100 <- Minus
3L 4135819..4136019 1..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:19 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4134860..4135766 202..1108 100 <- Minus
arm_3L 4135819..4136019 1..201 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:35:53 Download gff for LD40483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4134860..4135766 202..1108 100 <- Minus
3L 4135819..4136019 1..201 100   Minus

LD40483.hyp Sequence

Translation from 0 to 1031

> LD40483.hyp
NLFVRICEIAHKMPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVA
RLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNAS
NERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM
EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKW
EKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEP
HPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINI
DEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEKH*

LD40483.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-PA 331 CG14999-PA 1..331 13..343 1698 100 Plus
RfC3-PA 332 CG5313-PA 11..326 28..341 486 34.4 Plus
CG8142-PA 353 CG8142-PA 31..344 29..332 467 35.4 Plus
RfC38-PB 356 CG6258-PB 4..242 30..240 235 27.6 Plus
RfC38-PA 356 CG6258-PA 4..242 30..240 235 27.6 Plus

LD40483.pep Sequence

Translation from 36 to 1031

> LD40483.pep
MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAP
NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKI
KMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA
CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA
IVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHC
AANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREI
GITHMKIIDGINSLLQLTALLAKLCIAAEKH*

LD40483.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23886-PA 331 GF23886-PA 1..331 1..331 1699 94.6 Plus
Dana\GF15785-PA 332 GF15785-PA 10..323 15..326 501 34.9 Plus
Dana\GF21175-PA 352 GF21175-PA 14..343 1..320 499 35.2 Plus
Dana\GF14225-PA 356 GF14225-PA 4..232 18..218 240 28.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14218-PA 331 GG14218-PA 1..331 1..331 1749 98.8 Plus
Dere\GG10129-PA 332 GG10129-PA 10..323 15..326 503 34.6 Plus
Dere\GG18160-PA 353 GG18160-PA 23..344 9..320 489 35.1 Plus
Dere\GG10322-PA 356 GG10322-PA 4..242 18..228 231 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15919-PA 331 GH15919-PA 1..331 1..331 1597 88.2 Plus
Dgri\GH13305-PA 332 GH13305-PA 9..324 14..327 514 36 Plus
Dgri\GH18198-PA 356 GH18198-PA 25..298 8..307 506 38.3 Plus
Dgri\GH10966-PA 356 GH10966-PA 4..233 18..219 245 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
RfC4-PA 331 CG14999-PA 1..331 1..331 1698 100 Plus
RfC3-PA 332 CG5313-PA 11..326 16..329 486 34.4 Plus
CG8142-PA 353 CG8142-PA 31..344 17..320 467 35.4 Plus
RfC38-PB 356 CG6258-PB 4..242 18..228 235 27.6 Plus
RfC38-PA 356 CG6258-PA 4..242 18..228 235 27.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16571-PA 331 GI16571-PA 1..331 1..331 1567 86.4 Plus
Dmoj\GI18168-PA 332 GI18168-PA 9..324 14..327 504 35.3 Plus
Dmoj\GI10150-PA 354 GI10150-PA 32..352 17..327 503 36.1 Plus
Dmoj\GI18150-PA 356 GI18150-PA 4..233 18..219 254 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12737-PA 331 GL12737-PA 1..331 1..331 1556 88.5 Plus
Dper\GL14564-PA 354 GL14564-PA 23..345 8..320 512 35.9 Plus
Dper\GL19009-PA 333 GL19009-PA 12..242 17..247 469 40.1 Plus
Dper\GL18586-PA 356 GL18586-PA 4..244 18..230 239 28.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13416-PA 331 GA13416-PA 1..331 1..331 1556 88.5 Plus
Dpse\GA20846-PA 354 GA20846-PA 23..345 8..320 513 35.9 Plus
Dpse\GA25212-PA 333 GA25212-PA 12..242 17..247 470 40.1 Plus
Dpse\GA19473-PA 356 GA19473-PA 4..244 18..230 239 28.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14011-PA 331 GM14011-PA 1..331 1..331 1750 98.8 Plus
Dsec\GM18361-PA 332 GM18361-PA 10..323 15..326 501 34.6 Plus
Dsec\GM22851-PA 326 GM22851-PA 31..225 17..205 443 47.2 Plus
Dsec\GM11127-PA 351 GM11127-PA 4..242 18..228 240 28 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13291-PA 331 GD13291-PA 1..331 1..331 1763 99.4 Plus
Dsim\GD23698-PA 332 GD23698-PA 10..323 15..326 501 34.6 Plus
Dsim\GD22189-PA 227 GD22189-PA 4..205 18..191 225 29.7 Plus
Dsim\GD15662-PA 208 GD15662-PA 1..199 126..320 206 27.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12823-PA 331 GJ12823-PA 1..331 1..331 1592 88.2 Plus
Dvir\GJ14606-PA 332 GJ14606-PA 9..324 14..327 510 36 Plus
Dvir\GJ23369-PA 356 GJ23369-PA 34..354 17..327 498 35.8 Plus
Dvir\GJ14536-PA 356 GJ14536-PA 4..233 18..219 241 29.6 Plus
Dvir\GJ11052-PA 964 GJ11052-PA 394..635 7..216 165 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10084-PA 333 GK10084-PA 1..331 1..329 1568 88.2 Plus
Dwil\GK15259-PA 331 GK15259-PA 9..322 15..326 502 36.1 Plus
Dwil\GK25619-PA 355 GK25619-PA 27..346 12..320 485 36.7 Plus
Dwil\GK15241-PA 356 GK15241-PA 4..242 18..228 238 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20646-PA 331 GE20646-PA 1..331 1..331 1740 97.9 Plus
Dyak\GE18941-PA 332 GE18941-PA 10..323 15..326 503 34.6 Plus
Dyak\GE15569-PA 353 GE15569-PA 22..344 8..320 497 35.6 Plus
Dyak\GE12972-PA 356 GE12972-PA 4..242 18..228 236 27.6 Plus