BDGP Sequence Production Resources |
Search the DGRC for LD40483
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 404 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | RfC4-RA |
Protein status: | LD40483.pep: gold |
Preliminary Size: | 1238 |
Sequenced Size: | 1130 |
Gene | Date | Evidence |
---|---|---|
CG14999 | 2001-01-01 | Release 2 assignment |
CG14999 | 2002-03-19 | Blastp of sequenced clone |
CG14999 | 2003-01-01 | Sim4 clustering to Release 3 |
RfC40 | 2008-04-29 | Release 5.5 accounting |
RfC40 | 2008-08-15 | Release 5.9 accounting |
RfC40 | 2008-12-18 | 5.12 accounting |
1130 bp (1130 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094829
> LD40483.complete AATTTGTTTGTGCGAATTTGTGAAATTGCACATAAAATGCCGGAAGAACC AGAGAAAACGGCGGACGACAAGCGCAGTCACTTGCCGTGGATTGAGAAGT ACCGCCCCGTGAAGTTCAAGGAGATAGTGGGCAATGAGGATACCGTAGCA AGACTATCCGTATTCGCCACCCAGGGAAATGCACCCAATATTATTATTGC TGGTCCTCCTGGCGTGGGCAAGACAACCACCATCCAGTGTCTGGCCAGGA TTCTCCTGGGAGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCC AATGAACGAGGAATCGATGTGGTCCGCAACAAGATCAAGATGTTTGCTCA GCAGAAGGTGACACTGCCGCGGGGCAGGCACAAGATTGTGATTCTGGACG AGGCGGACAGCATGACGGAGGGTGCCCAGCAGGCACTGCGCCGGACCATG GAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGCGA GAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATTCACCA AGCTGTCCGATGCGCAAGTTCTGGCCAAGCTCATCGAGGTGGCCAAGTGG GAGAAGCTTAACTACACGGAGGACGGACTTGAGGCCATCGTATTCACTGC CCAAGGTGATATGCGACAGGGACTGAACAACCTGCAGTCCACCGCTCAGG GATTTGGCGACATCACCGCTGAGAACGTCTTTAAGGTCTGCGACGAGCCG CACCCAAAGCTCCTAGAGGAGATGATCCACCATTGCGCTGCTAACGACAT ACACAAGGCCTACAAAATCCTGGCCAAGCTGTGGAAGCTGGGATACTCGC CGGAGGACATCATTGCGAACATATTCCGTGTCTGCAAGCGCATCAACATC GATGAGCATTTGAAGCTGGACTTTATCCGTGAGATCGGAATCACCCACAT GAAGATTATCGATGGTATCAACTCGCTGCTGCAGCTCACCGCCCTTCTGG CCAAACTCTGCATTGCCGCCGAGAAGCATTAGATTTAATATGAACTATAG GTTAAAGAAATCTCAGAGATAAATAAAATTGGAGATAAATAAGTCCTTTT CAGTATTGAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC4-RA | 1192 | RfC4-RA | 78..1187 | 1..1110 | 5550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4134246..4135152 | 202..1108 | 100 | <- | Minus |
chr3L | 4135205..4135405 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC40-RA | 1..996 | 37..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 1..996 | 37..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 1..996 | 37..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC40-RA | 1..996 | 37..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 1..996 | 37..1032 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC40-RA | 21..1128 | 1..1108 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 21..1128 | 1..1108 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 20..1127 | 1..1108 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC40-RA | 21..1128 | 1..1108 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC4-RA | 20..1127 | 1..1108 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4134860..4135766 | 202..1108 | 100 | <- | Minus |
3L | 4135819..4136019 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4134860..4135766 | 202..1108 | 100 | <- | Minus |
3L | 4135819..4136019 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4134860..4135766 | 202..1108 | 100 | <- | Minus |
3L | 4135819..4136019 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4134860..4135766 | 202..1108 | 100 | <- | Minus |
arm_3L | 4135819..4136019 | 1..201 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4134860..4135766 | 202..1108 | 100 | <- | Minus |
3L | 4135819..4136019 | 1..201 | 100 | Minus |
Translation from 0 to 1031
> LD40483.hyp NLFVRICEIAHKMPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVA RLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNAS NERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTM EIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKW EKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEP HPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINI DEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEKH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC4-PA | 331 | CG14999-PA | 1..331 | 13..343 | 1698 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 11..326 | 28..341 | 486 | 34.4 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..344 | 29..332 | 467 | 35.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..242 | 30..240 | 235 | 27.6 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..242 | 30..240 | 235 | 27.6 | Plus |
Translation from 36 to 1031
> LD40483.pep MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAP NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKI KMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA IVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHC AANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREI GITHMKIIDGINSLLQLTALLAKLCIAAEKH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23886-PA | 331 | GF23886-PA | 1..331 | 1..331 | 1699 | 94.6 | Plus |
Dana\GF15785-PA | 332 | GF15785-PA | 10..323 | 15..326 | 501 | 34.9 | Plus |
Dana\GF21175-PA | 352 | GF21175-PA | 14..343 | 1..320 | 499 | 35.2 | Plus |
Dana\GF14225-PA | 356 | GF14225-PA | 4..232 | 18..218 | 240 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14218-PA | 331 | GG14218-PA | 1..331 | 1..331 | 1749 | 98.8 | Plus |
Dere\GG10129-PA | 332 | GG10129-PA | 10..323 | 15..326 | 503 | 34.6 | Plus |
Dere\GG18160-PA | 353 | GG18160-PA | 23..344 | 9..320 | 489 | 35.1 | Plus |
Dere\GG10322-PA | 356 | GG10322-PA | 4..242 | 18..228 | 231 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15919-PA | 331 | GH15919-PA | 1..331 | 1..331 | 1597 | 88.2 | Plus |
Dgri\GH13305-PA | 332 | GH13305-PA | 9..324 | 14..327 | 514 | 36 | Plus |
Dgri\GH18198-PA | 356 | GH18198-PA | 25..298 | 8..307 | 506 | 38.3 | Plus |
Dgri\GH10966-PA | 356 | GH10966-PA | 4..233 | 18..219 | 245 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC4-PA | 331 | CG14999-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
RfC3-PA | 332 | CG5313-PA | 11..326 | 16..329 | 486 | 34.4 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..344 | 17..320 | 467 | 35.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..242 | 18..228 | 235 | 27.6 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..242 | 18..228 | 235 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16571-PA | 331 | GI16571-PA | 1..331 | 1..331 | 1567 | 86.4 | Plus |
Dmoj\GI18168-PA | 332 | GI18168-PA | 9..324 | 14..327 | 504 | 35.3 | Plus |
Dmoj\GI10150-PA | 354 | GI10150-PA | 32..352 | 17..327 | 503 | 36.1 | Plus |
Dmoj\GI18150-PA | 356 | GI18150-PA | 4..233 | 18..219 | 254 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12737-PA | 331 | GL12737-PA | 1..331 | 1..331 | 1556 | 88.5 | Plus |
Dper\GL14564-PA | 354 | GL14564-PA | 23..345 | 8..320 | 512 | 35.9 | Plus |
Dper\GL19009-PA | 333 | GL19009-PA | 12..242 | 17..247 | 469 | 40.1 | Plus |
Dper\GL18586-PA | 356 | GL18586-PA | 4..244 | 18..230 | 239 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13416-PA | 331 | GA13416-PA | 1..331 | 1..331 | 1556 | 88.5 | Plus |
Dpse\GA20846-PA | 354 | GA20846-PA | 23..345 | 8..320 | 513 | 35.9 | Plus |
Dpse\GA25212-PA | 333 | GA25212-PA | 12..242 | 17..247 | 470 | 40.1 | Plus |
Dpse\GA19473-PA | 356 | GA19473-PA | 4..244 | 18..230 | 239 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14011-PA | 331 | GM14011-PA | 1..331 | 1..331 | 1750 | 98.8 | Plus |
Dsec\GM18361-PA | 332 | GM18361-PA | 10..323 | 15..326 | 501 | 34.6 | Plus |
Dsec\GM22851-PA | 326 | GM22851-PA | 31..225 | 17..205 | 443 | 47.2 | Plus |
Dsec\GM11127-PA | 351 | GM11127-PA | 4..242 | 18..228 | 240 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13291-PA | 331 | GD13291-PA | 1..331 | 1..331 | 1763 | 99.4 | Plus |
Dsim\GD23698-PA | 332 | GD23698-PA | 10..323 | 15..326 | 501 | 34.6 | Plus |
Dsim\GD22189-PA | 227 | GD22189-PA | 4..205 | 18..191 | 225 | 29.7 | Plus |
Dsim\GD15662-PA | 208 | GD15662-PA | 1..199 | 126..320 | 206 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12823-PA | 331 | GJ12823-PA | 1..331 | 1..331 | 1592 | 88.2 | Plus |
Dvir\GJ14606-PA | 332 | GJ14606-PA | 9..324 | 14..327 | 510 | 36 | Plus |
Dvir\GJ23369-PA | 356 | GJ23369-PA | 34..354 | 17..327 | 498 | 35.8 | Plus |
Dvir\GJ14536-PA | 356 | GJ14536-PA | 4..233 | 18..219 | 241 | 29.6 | Plus |
Dvir\GJ11052-PA | 964 | GJ11052-PA | 394..635 | 7..216 | 165 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10084-PA | 333 | GK10084-PA | 1..331 | 1..329 | 1568 | 88.2 | Plus |
Dwil\GK15259-PA | 331 | GK15259-PA | 9..322 | 15..326 | 502 | 36.1 | Plus |
Dwil\GK25619-PA | 355 | GK25619-PA | 27..346 | 12..320 | 485 | 36.7 | Plus |
Dwil\GK15241-PA | 356 | GK15241-PA | 4..242 | 18..228 | 238 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20646-PA | 331 | GE20646-PA | 1..331 | 1..331 | 1740 | 97.9 | Plus |
Dyak\GE18941-PA | 332 | GE18941-PA | 10..323 | 15..326 | 503 | 34.6 | Plus |
Dyak\GE15569-PA | 353 | GE15569-PA | 22..344 | 8..320 | 497 | 35.6 | Plus |
Dyak\GE12972-PA | 356 | GE12972-PA | 4..242 | 18..228 | 236 | 27.6 | Plus |