BDGP Sequence Production Resources |
Search the DGRC for LD40489
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 404 |
Well: | 89 |
Vector: | pOT2 |
Associated Gene/Transcript | SF2-RA |
Protein status: | LD40489.pep: gold |
Preliminary Size: | 1474 |
Sequenced Size: | 1395 |
Gene | Date | Evidence |
---|---|---|
CG6987 | 2001-01-01 | Release 2 assignment |
CG6987 | 2001-07-04 | Blastp of sequenced clone |
CG6987 | 2003-01-01 | Sim4 clustering to Release 3 |
SF2 | 2008-04-29 | Release 5.5 accounting |
SF2 | 2008-08-15 | Release 5.9 accounting |
SF2 | 2008-12-18 | 5.12 accounting |
1395 bp (1395 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051919
> LD40489.complete CCATTTGTCATTGTGAGCGTGACAAAAATAAGTTCTCTGAAAATCGAAAT AGATCGAAGCGTCTGATTTAAACTGGAGAAAATGGGATCACGCAACGAGT GCCGTATATATGTGGGCAACCTTCCCCCAGATATACGCACCAAGGATATC CAGGACCTGTTCCACAAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAA TCGGCGTGGGCCGCCATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATG CCGACGATGCGGTGAAGGCGCGCGACGGCTACGACTACGATGGGTATCGT CTGCGCGTGGAGTTCCCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGG CAACCGCAATGACCGAAGCCGCGACGGTGGGGGACGGATGGGCGGACGCG GACCGCCAGCCAAGCGCTCGCAGTACCGCGTCATGGTTACTGGACTGCCC GCCTCCGGATCGTGGCAAGATCTCAAGGATCACATGCGCGAGGCCGGCGA CGTCTGCTTCGCGGACACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCC TGCGCCACGAGGACATGAAGTACGCAATCAAAAAATTGGACGACTCTCGC TTCCGATCGCATGAGGGCGAGGTTGCCTACATTCGCGTACGCGAGGATAG CGGTGATAACGACAGAGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTG GCGGCAGCGGCGGAGGTGGAAGCCGTGACTACCGCGACAGATCCCGTTCG CGCTCATTCTCGTCGAGGCCGCGCCGTCGTGGCACTCCCACATACTCCCC AGTGCGACGTCAATCTTATTCCAGGTCTCGCTCACGTTCTAACTATTAAA CACAACCAAGCATTATCCATTAATCTATAATATTTTAATGAGCAGGAAAC AGGAAAAGCAAGCTATATTAGGAAATACCAATCAATATTTGTTCAAGACC CCTCAAATACCCCAATTGTAAATTGATTTGTAAAATGAAATCAACGACCA ATCAAGTTTGTTCAGTCAAGTTCCGAACTCTCACCGAAGCCAACATACTT AAAAAAGAAAAACACTTGCTTTTCCAACTTATCACACGTTCTAAGAAGCA GAAATGTTCTCTTAAGTTATAATCCACCGGGCAAAATTTGACAAAAACAG TTCTAAAATGACAACTGTAAACCAAGGAATTCTCTTTGGCCAAAAGCACT CGGCATTCCTTGATTTGCTTTTGATTATCTTTTGAGCCTTTGCTCAGTCT GCTTCCTACATATTATATTATAACTCTTATTTTGGCTGCACGTTTTCCAA GCTAATTTATTAGAATCTACCTTAACGAAAACAAGAAACATCGATACAGA ATAAATATGTTTGTAATGAGATAAAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 12164822..12165461 | 1376..737 | 3200 | 100 | Minus |
chr3R | 27901430 | chr3R | 12165923..12166294 | 616..245 | 1860 | 100 | Minus |
chr3R | 27901430 | chr3R | 12166422..12166667 | 246..1 | 1230 | 100 | Minus |
chr3R | 27901430 | chr3R | 12165517..12165643 | 740..614 | 635 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 16340119..16340766 | 1384..737 | 3225 | 99.8 | Minus |
3R | 32079331 | 3R | 16341228..16341599 | 616..245 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 16341727..16341972 | 246..1 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 16340822..16340948 | 740..614 | 635 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 16080950..16081597 | 1384..737 | 3225 | 99.8 | Minus |
3R | 31820162 | 3R | 16082059..16082430 | 616..245 | 1860 | 100 | Minus |
3R | 31820162 | 3R | 16082558..16082803 | 246..1 | 1230 | 100 | Minus |
3R | 31820162 | 3R | 16081653..16081779 | 740..614 | 635 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12164822..12165457 | 741..1376 | 100 | <- | Minus |
chr3R | 12165517..12165641 | 616..740 | 62 | <- | Minus |
chr3R | 12165924..12166293 | 246..615 | 100 | <- | Minus |
chr3R | 12166423..12166667 | 1..245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 1..768 | 82..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RB | 1..768 | 82..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 1..768 | 82..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 1..768 | 82..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 1..768 | 82..849 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 13..1388 | 1..1376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RB | 13..1388 | 1..1376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 17..1392 | 1..1376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 13..1388 | 1..1376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SF2-RA | 17..1392 | 1..1376 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16340127..16340762 | 741..1376 | 100 | <- | Minus |
3R | 16340822..16340946 | 616..740 | 100 | <- | Minus |
3R | 16341229..16341598 | 246..615 | 100 | <- | Minus |
3R | 16341728..16341972 | 1..245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16340127..16340762 | 741..1376 | 100 | <- | Minus |
3R | 16340822..16340946 | 616..740 | 100 | <- | Minus |
3R | 16341229..16341598 | 246..615 | 100 | <- | Minus |
3R | 16341728..16341972 | 1..245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16340127..16340762 | 741..1376 | 100 | <- | Minus |
3R | 16340822..16340946 | 616..740 | 100 | <- | Minus |
3R | 16341229..16341598 | 246..615 | 100 | <- | Minus |
3R | 16341728..16341972 | 1..245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12165849..12166484 | 741..1376 | 100 | <- | Minus |
arm_3R | 12166544..12166668 | 616..740 | 100 | <- | Minus |
arm_3R | 12166951..12167320 | 246..615 | 100 | <- | Minus |
arm_3R | 12167450..12167694 | 1..245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16082060..16082429 | 246..615 | 100 | <- | Minus |
3R | 16082559..16082803 | 1..245 | 100 | Minus | |
3R | 16080958..16081593 | 741..1376 | 100 | <- | Minus |
3R | 16081653..16081777 | 616..740 | 100 | <- | Minus |
Translation from 81 to 848
> LD40489.pep MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR SRSNY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16525-PA | 253 | GF16525-PA | 1..253 | 1..255 | 1229 | 97.3 | Plus |
Dana\GF17608-PA | 350 | GF17608-PA | 4..175 | 7..174 | 288 | 41 | Plus |
Dana\GF17902-PA | 163 | GF17902-PA | 11..80 | 7..77 | 149 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20059-PA | 255 | GG20059-PA | 1..255 | 1..255 | 1287 | 100 | Plus |
Dere\GG19772-PA | 135 | GG19772-PA | 5..131 | 8..131 | 162 | 37 | Plus |
Dere\GG17683-PA | 144 | GG17683-PA | 11..81 | 7..78 | 148 | 47.9 | Plus |
Dere\GG19507-PA | 159 | GG19507-PA | 11..81 | 7..78 | 144 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18077-PA | 252 | GH18077-PA | 1..252 | 1..255 | 1222 | 96.1 | Plus |
Dgri\GH18528-PA | 360 | GH18528-PA | 4..203 | 7..202 | 262 | 39.7 | Plus |
Dgri\GH24472-PA | 163 | GH24472-PA | 11..81 | 7..78 | 144 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SF2-PB | 255 | CG6987-PB | 1..255 | 1..255 | 1375 | 100 | Plus |
SF2-PA | 255 | CG6987-PA | 1..255 | 1..255 | 1375 | 100 | Plus |
B52-PN | 350 | CG10851-PN | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PC | 350 | CG10851-PC | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PA | 350 | CG10851-PA | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PB | 329 | CG10851-PB | 5..237 | 8..253 | 400 | 43.1 | Plus |
B52-PO | 355 | CG10851-PO | 5..237 | 8..253 | 400 | 43.1 | Plus |
B52-PM | 355 | CG10851-PM | 5..237 | 8..253 | 400 | 43.1 | Plus |
B52-PI | 135 | CG10851-PI | 5..131 | 8..131 | 199 | 39.3 | Plus |
B52-PD | 135 | CG10851-PD | 5..131 | 8..131 | 199 | 39.3 | Plus |
x16-PB | 257 | CG10203-PB | 9..255 | 8..253 | 196 | 31.2 | Plus |
B52-PK | 147 | CG10851-PK | 5..129 | 8..129 | 195 | 39.1 | Plus |
B52-PF | 147 | CG10851-PF | 5..129 | 8..129 | 195 | 39.1 | Plus |
x16-PA | 258 | CG10203-PA | 9..256 | 8..253 | 195 | 31.5 | Plus |
rump-PB | 214 | CG9373-PB | 33..207 | 90..249 | 194 | 34.6 | Plus |
rump-PA | 632 | CG9373-PA | 33..187 | 90..229 | 193 | 34.6 | Plus |
Rbp1-like-PC | 158 | CG1987-PC | 11..142 | 7..116 | 184 | 37.6 | Plus |
Rbp1-like-PA | 158 | CG1987-PA | 11..142 | 7..116 | 184 | 37.6 | Plus |
Rbp1-like-PB | 247 | CG1987-PB | 11..116 | 7..110 | 184 | 43 | Plus |
Rbp1-PA | 135 | CG17136-PA | 11..115 | 7..113 | 179 | 42.1 | Plus |
Rbp1-PD | 144 | CG17136-PD | 11..101 | 7..107 | 165 | 41.6 | Plus |
Rsf1-PB | 200 | CG5655-PB | 4..193 | 1..221 | 165 | 30.2 | Plus |
Rsf1-PA | 200 | CG5655-PA | 4..193 | 1..221 | 165 | 30.2 | Plus |
SC35-PD | 195 | CG5442-PD | 27..136 | 11..116 | 156 | 38.2 | Plus |
SC35-PC | 195 | CG5442-PC | 27..136 | 11..116 | 156 | 38.2 | Plus |
SC35-PB | 195 | CG5442-PB | 27..136 | 11..116 | 156 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24651-PA | 246 | GI24651-PA | 1..246 | 1..255 | 1218 | 95.3 | Plus |
Dmoj\GI23736-PA | 137 | GI23736-PA | 11..81 | 7..78 | 151 | 47.9 | Plus |
Dmoj\GI15337-PA | 151 | GI15337-PA | 11..81 | 7..78 | 144 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22249-PA | 263 | GL22249-PA | 1..263 | 1..255 | 1193 | 92.8 | Plus |
Dper\GL23543-PA | 358 | GL23543-PA | 4..175 | 7..174 | 288 | 41.5 | Plus |
Dper\GL26725-PA | 174 | GL26725-PA | 11..81 | 7..78 | 143 | 46.6 | Plus |
Dper\GL18979-PA | 196 | GL18979-PA | 10..93 | 7..91 | 140 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20008-PA | 263 | GA20008-PA | 1..263 | 1..255 | 1193 | 92.8 | Plus |
Dpse\GA10599-PA | 357 | GA10599-PA | 4..175 | 7..174 | 289 | 41 | Plus |
Dpse\GA30013-PA | 259 | GA30013-PA | 9..81 | 8..81 | 145 | 45.3 | Plus |
Dpse\GA15173-PA | 161 | GA15173-PA | 11..81 | 7..78 | 144 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15444-PA | 255 | GM15444-PA | 1..255 | 1..255 | 1287 | 100 | Plus |
Dsec\GM24118-PA | 135 | GM24118-PA | 5..131 | 8..131 | 162 | 37.4 | Plus |
Dsec\GM23896-PA | 144 | GM23896-PA | 11..81 | 7..78 | 148 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18917-PA | 135 | GD18917-PA | 5..131 | 8..131 | 162 | 37.4 | Plus |
Dsim\GD18708-PA | 144 | GD18708-PA | 11..81 | 7..78 | 148 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23504-PA | 247 | GJ23504-PA | 1..247 | 1..255 | 1221 | 95.7 | Plus |
Dvir\GJ24113-PA | 347 | GJ24113-PA | 4..175 | 7..174 | 286 | 41 | Plus |
Dvir\GJ10582-PA | 140 | GJ10582-PA | 11..84 | 7..81 | 159 | 47.4 | Plus |
Dvir\GJ14774-PA | 155 | GJ14774-PA | 11..81 | 7..78 | 146 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13511-PA | 263 | GK13511-PA | 1..263 | 1..255 | 1241 | 95.4 | Plus |
Dwil\GK13948-PA | 362 | GK13948-PA | 4..180 | 7..174 | 296 | 40.9 | Plus |
Dwil\GK13897-PA | 140 | GK13897-PA | 11..81 | 7..78 | 156 | 47.9 | Plus |
Dwil\GK16401-PA | 176 | GK16401-PA | 11..81 | 7..78 | 146 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26323-PA | 254 | GE26323-PA | 1..254 | 1..255 | 1262 | 98.8 | Plus |
Dyak\GE26284-PA | 135 | GE26284-PA | 5..131 | 8..131 | 162 | 37 | Plus |
Dyak\GE26048-PA | 135 | GE26048-PA | 11..81 | 7..78 | 146 | 47.9 | Plus |
Dyak\GE16161-PA | 160 | GE16161-PA | 11..81 | 7..78 | 144 | 46.6 | Plus |
Translation from 81 to 848
> LD40489.hyp MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR SRSNY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SF2-PB | 255 | CG6987-PB | 1..255 | 1..255 | 1375 | 100 | Plus |
SF2-PA | 255 | CG6987-PA | 1..255 | 1..255 | 1375 | 100 | Plus |
B52-PN | 350 | CG10851-PN | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PC | 350 | CG10851-PC | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PA | 350 | CG10851-PA | 5..232 | 8..253 | 405 | 43.2 | Plus |