BDGP Sequence Production Resources |
Search the DGRC for LD40493
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 404 |
Well: | 93 |
Vector: | pOT2 |
Associated Gene/Transcript | TFAM-RA |
Protein status: | LD40493.pep: gold |
Preliminary Size: | 1176 |
Sequenced Size: | 1050 |
Gene | Date | Evidence |
---|---|---|
CG4217 | 2001-01-01 | Release 2 assignment |
CG4217 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4217 | 2003-01-13 | Blastp of sequenced clone |
TFAM | 2008-04-29 | Release 5.5 accounting |
TFAM | 2008-08-15 | Release 5.9 accounting |
TFAM | 2008-12-18 | 5.12 accounting |
1050 bp (1050 high quality bases) assembled on 2003-01-13
GenBank Submission: AY061457
> LD40493.complete CGGCCTAGAATGCCGCATTTTTTACGTAAATCCTTTTTTCCGTAAATGCA ACAAGTTCCCCGTGATTTTTAAATAGCTTACAACGCAAGGAAGCAGGTTC GCCATTGAGATCATGATCTACACCACAACACTGATGTCCTCGCGCGGCGG CCTCATCGGCTCGCTGATCAACAAAGTCAGGCCCCTAGCAGCCGCCAGCA TCAGCAACACTCCGGCGGTGCCGTCGAAGACCCTGGAGGAGCAGTTGGGC CTGCCGCCGCGACCAAAGAAACCGCTGACTCCCTACTTTCGCTTCATGCG GGAGCAGCGGCCCAAGCTGAAGGCTGCCAATCCCCAGATTACCACCGTCG AGGTGGTGCGCCAGCTGTCTAAGAACTGGTCCGATGCCGATGCGCAGCTG AAGGAGCGCCTGCAGGCCGAGTTCAAGCGGGACCAACAAATCTACGTGGA GGAGCGAACAAAGTACGATGCCACACTCACGGAGGAGCAGCGGGCCGAGA TCAAGCAGCTCAAGCAGGACCTCGTTGACGCCAAGGAGCGCCGCCAGCTG CGCAAGCGGGTCAAGGAGCTGGGGCGACCCAAAAAGCCCGCTTCGGCCTT CCTGCGATTCATCGCCAGCGAACGTATCAACACTCCGCAGGGCGACAAGC AAACCTACCGCGAGTGGCACCAAAAGACCACCGCCAAGTGGACTCGCCTT TCCGACTCCGAGAAGGAGGTCTACATGCAGGAGTCGCGCAAGGAGATGGA GCTCTACAGGAAAGCGATTTCCGTTTGGGAGGAGAAGATGATCCGCCTGG GCCACATCGACGTGGTGCGTCACGGAAATCTTATCGATCCACCTGAGCCA AAGCCCCGCAAGACGCTGGCCTCCAAAGATATATAGTTGTAGCTGCTCGG CCCGCCCTCTTCCATCACATAATTCACAAATCATGCATCATTCTGTTTTT CGTTTTTCTTTTTCGATCGCCAATTGTTAAGGTTAGGGCATTAAAGATTA AATGCTAGCCAGCCAGCATAAGTTTAACTTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TFAM-RB | 1262 | TFAM-RB | 294..1148 | 179..1033 | 4275 | 100 | Plus |
TFAM.b | 1543 | TFAM.b | 294..1148 | 179..1033 | 4275 | 100 | Plus |
TFAM.d | 1782 | TFAM.d | 294..1148 | 179..1033 | 4275 | 100 | Plus |
TFAM-RB | 1262 | TFAM-RB | 35..216 | 1..182 | 910 | 100 | Plus |
TFAM.b | 1543 | TFAM.b | 35..216 | 1..182 | 910 | 100 | Plus |
TFAM.d | 1782 | TFAM.d | 35..216 | 1..182 | 910 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16400059..16400640 | 760..179 | 2910 | 100 | Minus |
chr3R | 27901430 | chr3R | 16399265..16399537 | 1030..758 | 1365 | 100 | Minus |
chr3R | 27901430 | chr3R | 16400718..16400899 | 182..1 | 910 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20576145..20576726 | 760..179 | 2910 | 100 | Minus |
3R | 32079331 | 3R | 20575348..20575623 | 1033..758 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 20576804..20576985 | 182..1 | 910 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20316976..20317557 | 760..179 | 2910 | 100 | Minus |
3R | 31820162 | 3R | 20316179..20316454 | 1033..758 | 1380 | 100 | Minus |
3R | 31820162 | 3R | 20317635..20317816 | 182..1 | 910 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16399265..16399535 | 760..1030 | 100 | <- | Minus |
chr3R | 16400060..16400638 | 181..759 | 100 | <- | Minus |
chr3R | 16400720..16400899 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 1..774 | 113..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 1..774 | 113..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 1..774 | 113..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 1..774 | 113..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 1..774 | 113..886 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 35..1064 | 1..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 35..1064 | 1..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 26..1055 | 1..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 35..1064 | 1..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TFAM-RA | 26..1055 | 1..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20575351..20575621 | 760..1030 | 100 | <- | Minus |
3R | 20576146..20576724 | 181..759 | 100 | <- | Minus |
3R | 20576806..20576985 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20575351..20575621 | 760..1030 | 100 | <- | Minus |
3R | 20576146..20576724 | 181..759 | 100 | <- | Minus |
3R | 20576806..20576985 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20575351..20575621 | 760..1030 | 100 | <- | Minus |
3R | 20576146..20576724 | 181..759 | 100 | <- | Minus |
3R | 20576806..20576985 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16401073..16401343 | 760..1030 | 100 | <- | Minus |
arm_3R | 16401868..16402446 | 181..759 | 100 | <- | Minus |
arm_3R | 16402528..16402707 | 1..180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20316182..20316452 | 760..1030 | 100 | <- | Minus |
3R | 20316977..20317555 | 181..759 | 100 | <- | Minus |
3R | 20317637..20317816 | 1..180 | 100 | Minus |
Translation from 112 to 885
> LD40493.pep MIYTTTLMSSRGGLIGSLINKVRPLAAASISNTPAVPSKTLEEQLGLPPR PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERL QAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRV KELGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTAKWTRLSDSE KEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVRHGNLIDPPEPKPRK TLASKDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18333-PA | 257 | GF18333-PA | 1..256 | 1..256 | 1161 | 82.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15368-PA | 257 | GG15368-PA | 1..256 | 1..256 | 1270 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14163-PA | 252 | GH14163-PA | 5..250 | 10..255 | 1000 | 74.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TFAM-PA | 257 | CG4217-PA | 1..257 | 1..257 | 1314 | 100 | Plus |
TFAM-PB | 284 | CG4217-PB | 1..284 | 1..257 | 1276 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10534-PA | 256 | GI10534-PA | 1..255 | 1..256 | 979 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13929-PA | 256 | GL13929-PA | 1..249 | 1..250 | 1082 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18041-PA | 256 | GA18041-PA | 1..249 | 1..250 | 1082 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23183-PA | 257 | GM23183-PA | 1..257 | 1..257 | 1343 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20056-PA | 257 | GD20056-PA | 1..257 | 1..257 | 1341 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24186-PA | 256 | GJ24186-PA | 1..255 | 1..256 | 1022 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22718-PA | 256 | GK22718-PA | 1..255 | 1..256 | 1080 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25063-PA | 257 | GE25063-PA | 1..256 | 1..256 | 1271 | 93.8 | Plus |
Translation from 112 to 885
> LD40493.hyp MIYTTTLMSSRGGLIGSLINKVRPLAAASISNTPAVPSKTLEEQLGLPPR PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERL QAEFKRDQQIYVEERTKYDATLTEEQRAEIKQLKQDLVDAKERRQLRKRV KELGRPKKPASAFLRFIASERINTPQGDKQTYREWHQKTTAKWTRLSDSE KEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVRHGNLIDPPEPKPRK TLASKDI*